HEADER TRANSCRIPTION REGULATOR 21-SEP-09 3JY6 TITLE CRYSTAL STRUCTURE OF LACI TRANSCRIPTIONAL REGULATOR FROM LACTOBACILLUS TITLE 2 BREVIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, LACI FAMILY; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 64-328; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS BREVIS; SOURCE 3 ORGANISM_TAXID: 387344; SOURCE 4 STRAIN: ATCC 367; SOURCE 5 GENE: LVIS_0444; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS NYSGXRC, PSI-II, TRANSCRIPTIONAL REGULATOR, LAC I, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, 11238G, STRUCTURAL GENOMICS, NEW YORK SGX RESEARCH KEYWDS 3 CENTER FOR STRUCTURAL GENOMICS, DNA-BINDING, TRANSCRIPTION, KEYWDS 4 TRANSCRIPTION REGULATION, TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR B.SYED IBRAHIM,D.KUMARAN,S.K.BURLEY,S.SWAMINATHAN,NEW YORK SGX AUTHOR 2 RESEARCH CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 4 21-FEB-24 3JY6 1 REMARK REVDAT 3 10-FEB-21 3JY6 1 AUTHOR JRNL REMARK SEQADV REVDAT 2 13-JUL-11 3JY6 1 VERSN REVDAT 1 13-OCT-09 3JY6 0 JRNL AUTH B.SYED IBRAHIM,D.KUMARAN,S.K.BURLEY,S.SWAMINATHAN JRNL TITL CRYSTAL STRUCTURE OF LACI TRANSCRIPTIONAL REGULATOR FROM JRNL TITL 2 LACTOBACILLUS BREVIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 81982.460 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 88.3 REMARK 3 NUMBER OF REFLECTIONS : 61427 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3111 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.97 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.09 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 44.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4898 REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 271 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.017 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8106 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 176 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.18300 REMARK 3 B22 (A**2) : 1.57000 REMARK 3 B33 (A**2) : 1.61200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.91400 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM SIGMAA (A) : 0.29 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.27 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.800 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.110 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.380 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.240 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.000 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.980 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 34.81 REMARK 3 REMARK 3 NCS MODEL : NONE REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : EDO.PAR REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : EDO.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3JY6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000055307. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789 REMARK 200 MONOCHROMATOR : SI III REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65400 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.68000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP, SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MG CL2, 0.1M BIS TRIS, 25% PEG REMARK 280 3350, 2M NACL, ETHYLENE GLYCOL, PH 5.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 54.66400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 61 REMARK 465 SER A 62 REMARK 465 LEU A 63 REMARK 465 THR A 64 REMARK 465 GLU A 286 REMARK 465 PRO A 287 REMARK 465 GLY A 330 REMARK 465 HIS A 331 REMARK 465 HIS A 332 REMARK 465 HIS A 333 REMARK 465 HIS A 334 REMARK 465 HIS A 335 REMARK 465 HIS A 336 REMARK 465 MET B 61 REMARK 465 SER B 62 REMARK 465 LEU B 63 REMARK 465 THR B 64 REMARK 465 GLN B 65 REMARK 465 SER B 66 REMARK 465 SER B 67 REMARK 465 GLU B 286 REMARK 465 PRO B 287 REMARK 465 GLU B 329 REMARK 465 GLY B 330 REMARK 465 HIS B 331 REMARK 465 HIS B 332 REMARK 465 HIS B 333 REMARK 465 HIS B 334 REMARK 465 HIS B 335 REMARK 465 HIS B 336 REMARK 465 MET C 61 REMARK 465 SER C 62 REMARK 465 LEU C 63 REMARK 465 THR C 64 REMARK 465 GLN C 65 REMARK 465 SER C 66 REMARK 465 SER C 67 REMARK 465 ARG C 179 REMARK 465 GLN C 238 REMARK 465 ASN C 239 REMARK 465 ASP C 240 REMARK 465 GLN C 241 REMARK 465 GLU C 286 REMARK 465 PRO C 287 REMARK 465 GLU C 329 REMARK 465 GLY C 330 REMARK 465 HIS C 331 REMARK 465 HIS C 332 REMARK 465 HIS C 333 REMARK 465 HIS C 334 REMARK 465 HIS C 335 REMARK 465 HIS C 336 REMARK 465 MET D 61 REMARK 465 SER D 62 REMARK 465 LEU D 63 REMARK 465 THR D 64 REMARK 465 GLN D 65 REMARK 465 SER D 66 REMARK 465 SER D 67 REMARK 465 ASN D 224 REMARK 465 GLY D 330 REMARK 465 HIS D 331 REMARK 465 HIS D 332 REMARK 465 HIS D 333 REMARK 465 HIS D 334 REMARK 465 HIS D 335 REMARK 465 HIS D 336 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 211 CG CD OE1 NE2 REMARK 470 ARG A 283 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 143 CG ND1 CD2 CE1 NE2 REMARK 470 ASN B 239 CG OD1 ND2 REMARK 470 ASP B 240 CG OD1 OD2 REMARK 470 LYS B 288 CG CD CE NZ REMARK 470 LEU B 289 CG CD1 CD2 REMARK 470 GLN C 211 CG CD OE1 NE2 REMARK 470 THR C 237 OG1 CG2 REMARK 470 ASP C 280 CG OD1 OD2 REMARK 470 PHE C 281 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE C 282 CG1 CG2 CD1 REMARK 470 ARG C 283 CG CD NE CZ NH1 NH2 REMARK 470 SER D 131 OG REMARK 470 GLN D 230 CG CD OE1 NE2 REMARK 470 ILE D 282 CG1 CG2 CD1 REMARK 470 ARG D 283 CG CD NE CZ NH1 NH2 REMARK 470 PRO D 287 CG CD REMARK 470 LYS D 288 CG CD CE NZ REMARK 470 LYS D 315 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 282 CB - CA - C ANGL. DEV. = -12.5 DEGREES REMARK 500 LYS A 288 CA - C - O ANGL. DEV. = 13.3 DEGREES REMARK 500 ILE B 282 CB - CA - C ANGL. DEV. = -14.3 DEGREES REMARK 500 LEU C 289 N - CA - C ANGL. DEV. = 20.9 DEGREES REMARK 500 LEU D 129 CA - CB - CG ANGL. DEV. = 21.4 DEGREES REMARK 500 LEU D 129 CB - CG - CD2 ANGL. DEV. = -14.2 DEGREES REMARK 500 PHE D 132 N - CA - C ANGL. DEV. = 20.6 DEGREES REMARK 500 ARG D 284 N - CA - C ANGL. DEV. = -16.4 DEGREES REMARK 500 GLU D 286 N - CA - CB ANGL. DEV. = 11.4 DEGREES REMARK 500 GLU D 286 N - CA - C ANGL. DEV. = -21.6 DEGREES REMARK 500 GLU D 286 CA - C - N ANGL. DEV. = -19.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 107 15.41 59.44 REMARK 500 SER A 131 -159.26 -134.87 REMARK 500 GLN A 211 -73.35 -81.32 REMARK 500 GLN A 269 -39.96 -139.09 REMARK 500 ILE B 77 -6.05 -56.94 REMARK 500 GLN B 180 0.60 -60.65 REMARK 500 SER B 222 99.38 -166.44 REMARK 500 SER C 131 -153.69 -121.52 REMARK 500 ASN C 268 21.87 81.44 REMARK 500 ARG C 284 96.42 -65.50 REMARK 500 THR C 290 111.01 81.42 REMARK 500 ASN C 295 61.87 62.40 REMARK 500 SER D 131 154.31 -22.82 REMARK 500 PHE D 132 -10.83 -40.07 REMARK 500 ASP D 152 -65.26 73.37 REMARK 500 VAL D 228 -50.20 113.60 REMARK 500 ILE D 282 -20.19 -31.16 REMARK 500 ARG D 283 140.12 -176.79 REMARK 500 ARG D 284 -33.76 -178.41 REMARK 500 MET D 285 -68.21 -14.64 REMARK 500 GLU D 286 88.01 -153.30 REMARK 500 PRO D 287 -7.83 -25.99 REMARK 500 ASN D 295 63.87 65.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU D 286 17.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO D 3318 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO D 3319 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-11238G RELATED DB: TARGETDB DBREF 3JY6 A 64 328 UNP Q03T70 Q03T70_LACBA 64 328 DBREF 3JY6 B 64 328 UNP Q03T70 Q03T70_LACBA 64 328 DBREF 3JY6 C 64 268 UNP Q03T70 Q03T70_LACBA 64 328 DBREF 3JY6 D 64 328 UNP Q03T70 Q03T70_LACBA 64 328 SEQADV 3JY6 MET A 61 UNP Q03T70 EXPRESSION TAG SEQADV 3JY6 SER A 62 UNP Q03T70 EXPRESSION TAG SEQADV 3JY6 LEU A 63 UNP Q03T70 EXPRESSION TAG SEQADV 3JY6 GLU A 329 UNP Q03T70 EXPRESSION TAG SEQADV 3JY6 GLY A 330 UNP Q03T70 EXPRESSION TAG SEQADV 3JY6 HIS A 331 UNP Q03T70 EXPRESSION TAG SEQADV 3JY6 HIS A 332 UNP Q03T70 EXPRESSION TAG SEQADV 3JY6 HIS A 333 UNP Q03T70 EXPRESSION TAG SEQADV 3JY6 HIS A 334 UNP Q03T70 EXPRESSION TAG SEQADV 3JY6 HIS A 335 UNP Q03T70 EXPRESSION TAG SEQADV 3JY6 HIS A 336 UNP Q03T70 EXPRESSION TAG SEQADV 3JY6 MET B 61 UNP Q03T70 EXPRESSION TAG SEQADV 3JY6 SER B 62 UNP Q03T70 EXPRESSION TAG SEQADV 3JY6 LEU B 63 UNP Q03T70 EXPRESSION TAG SEQADV 3JY6 GLU B 329 UNP Q03T70 EXPRESSION TAG SEQADV 3JY6 GLY B 330 UNP Q03T70 EXPRESSION TAG SEQADV 3JY6 HIS B 331 UNP Q03T70 EXPRESSION TAG SEQADV 3JY6 HIS B 332 UNP Q03T70 EXPRESSION TAG SEQADV 3JY6 HIS B 333 UNP Q03T70 EXPRESSION TAG SEQADV 3JY6 HIS B 334 UNP Q03T70 EXPRESSION TAG SEQADV 3JY6 HIS B 335 UNP Q03T70 EXPRESSION TAG SEQADV 3JY6 HIS B 336 UNP Q03T70 EXPRESSION TAG SEQADV 3JY6 MET C 61 UNP Q03T70 EXPRESSION TAG SEQADV 3JY6 SER C 62 UNP Q03T70 EXPRESSION TAG SEQADV 3JY6 LEU C 63 UNP Q03T70 EXPRESSION TAG SEQADV 3JY6 GLU C 329 UNP Q03T70 EXPRESSION TAG SEQADV 3JY6 GLY C 330 UNP Q03T70 EXPRESSION TAG SEQADV 3JY6 HIS C 331 UNP Q03T70 EXPRESSION TAG SEQADV 3JY6 HIS C 332 UNP Q03T70 EXPRESSION TAG SEQADV 3JY6 HIS C 333 UNP Q03T70 EXPRESSION TAG SEQADV 3JY6 HIS C 334 UNP Q03T70 EXPRESSION TAG SEQADV 3JY6 HIS C 335 UNP Q03T70 EXPRESSION TAG SEQADV 3JY6 HIS C 336 UNP Q03T70 EXPRESSION TAG SEQADV 3JY6 MET D 61 UNP Q03T70 EXPRESSION TAG SEQADV 3JY6 SER D 62 UNP Q03T70 EXPRESSION TAG SEQADV 3JY6 LEU D 63 UNP Q03T70 EXPRESSION TAG SEQADV 3JY6 GLU D 329 UNP Q03T70 EXPRESSION TAG SEQADV 3JY6 GLY D 330 UNP Q03T70 EXPRESSION TAG SEQADV 3JY6 HIS D 331 UNP Q03T70 EXPRESSION TAG SEQADV 3JY6 HIS D 332 UNP Q03T70 EXPRESSION TAG SEQADV 3JY6 HIS D 333 UNP Q03T70 EXPRESSION TAG SEQADV 3JY6 HIS D 334 UNP Q03T70 EXPRESSION TAG SEQADV 3JY6 HIS D 335 UNP Q03T70 EXPRESSION TAG SEQADV 3JY6 HIS D 336 UNP Q03T70 EXPRESSION TAG SEQRES 1 A 276 MET SER LEU THR GLN SER SER LYS LEU ILE ALA VAL ILE SEQRES 2 A 276 VAL ALA ASN ILE ASP ASP TYR PHE SER THR GLU LEU PHE SEQRES 3 A 276 LYS GLY ILE SER SER ILE LEU GLU SER ARG GLY TYR ILE SEQRES 4 A 276 GLY VAL LEU PHE ASP ALA ASN ALA ASP ILE GLU ARG GLU SEQRES 5 A 276 LYS THR LEU LEU ARG ALA ILE GLY SER ARG GLY PHE ASP SEQRES 6 A 276 GLY LEU ILE LEU GLN SER PHE SER ASN PRO GLN THR VAL SEQRES 7 A 276 GLN GLU ILE LEU HIS GLN GLN MET PRO VAL VAL SER VAL SEQRES 8 A 276 ASP ARG GLU MET ASP ALA CYS PRO TRP PRO GLN VAL VAL SEQRES 9 A 276 THR ASP ASN PHE GLU ALA ALA LYS ALA ALA THR THR ALA SEQRES 10 A 276 PHE ARG GLN GLN GLY TYR GLN HIS VAL VAL VAL LEU THR SEQRES 11 A 276 SER GLU LEU GLU LEU SER ARG THR ARG GLN GLU ARG TYR SEQRES 12 A 276 ARG GLY ILE LEU ALA ALA ALA GLN ASP VAL ASP VAL LEU SEQRES 13 A 276 GLU VAL SER GLU SER SER TYR ASN HIS SER GLU VAL HIS SEQRES 14 A 276 GLN ARG LEU THR GLN LEU ILE THR GLN ASN ASP GLN LYS SEQRES 15 A 276 THR VAL ALA PHE ALA LEU LYS GLU ARG TRP LEU LEU GLU SEQRES 16 A 276 PHE PHE PRO ASN LEU ILE ILE SER GLY LEU ILE ASP ASN SEQRES 17 A 276 GLN THR VAL THR ALA THR GLY PHE ALA ASP THR ASP PHE SEQRES 18 A 276 ILE ARG ARG MET GLU PRO LYS LEU THR LEU ILE THR GLN SEQRES 19 A 276 ASN PRO PHE LEU MET GLY ALA SER SER ALA GLU ILE MET SEQRES 20 A 276 LEU ARG GLN LEU ALA GLY GLU LYS VAL ALA PRO GLU LYS SEQRES 21 A 276 MET VAL ILE PRO ALA LYS LEU GLN GLU GLY HIS HIS HIS SEQRES 22 A 276 HIS HIS HIS SEQRES 1 B 276 MET SER LEU THR GLN SER SER LYS LEU ILE ALA VAL ILE SEQRES 2 B 276 VAL ALA ASN ILE ASP ASP TYR PHE SER THR GLU LEU PHE SEQRES 3 B 276 LYS GLY ILE SER SER ILE LEU GLU SER ARG GLY TYR ILE SEQRES 4 B 276 GLY VAL LEU PHE ASP ALA ASN ALA ASP ILE GLU ARG GLU SEQRES 5 B 276 LYS THR LEU LEU ARG ALA ILE GLY SER ARG GLY PHE ASP SEQRES 6 B 276 GLY LEU ILE LEU GLN SER PHE SER ASN PRO GLN THR VAL SEQRES 7 B 276 GLN GLU ILE LEU HIS GLN GLN MET PRO VAL VAL SER VAL SEQRES 8 B 276 ASP ARG GLU MET ASP ALA CYS PRO TRP PRO GLN VAL VAL SEQRES 9 B 276 THR ASP ASN PHE GLU ALA ALA LYS ALA ALA THR THR ALA SEQRES 10 B 276 PHE ARG GLN GLN GLY TYR GLN HIS VAL VAL VAL LEU THR SEQRES 11 B 276 SER GLU LEU GLU LEU SER ARG THR ARG GLN GLU ARG TYR SEQRES 12 B 276 ARG GLY ILE LEU ALA ALA ALA GLN ASP VAL ASP VAL LEU SEQRES 13 B 276 GLU VAL SER GLU SER SER TYR ASN HIS SER GLU VAL HIS SEQRES 14 B 276 GLN ARG LEU THR GLN LEU ILE THR GLN ASN ASP GLN LYS SEQRES 15 B 276 THR VAL ALA PHE ALA LEU LYS GLU ARG TRP LEU LEU GLU SEQRES 16 B 276 PHE PHE PRO ASN LEU ILE ILE SER GLY LEU ILE ASP ASN SEQRES 17 B 276 GLN THR VAL THR ALA THR GLY PHE ALA ASP THR ASP PHE SEQRES 18 B 276 ILE ARG ARG MET GLU PRO LYS LEU THR LEU ILE THR GLN SEQRES 19 B 276 ASN PRO PHE LEU MET GLY ALA SER SER ALA GLU ILE MET SEQRES 20 B 276 LEU ARG GLN LEU ALA GLY GLU LYS VAL ALA PRO GLU LYS SEQRES 21 B 276 MET VAL ILE PRO ALA LYS LEU GLN GLU GLY HIS HIS HIS SEQRES 22 B 276 HIS HIS HIS SEQRES 1 C 276 MET SER LEU THR GLN SER SER LYS LEU ILE ALA VAL ILE SEQRES 2 C 276 VAL ALA ASN ILE ASP ASP TYR PHE SER THR GLU LEU PHE SEQRES 3 C 276 LYS GLY ILE SER SER ILE LEU GLU SER ARG GLY TYR ILE SEQRES 4 C 276 GLY VAL LEU PHE ASP ALA ASN ALA ASP ILE GLU ARG GLU SEQRES 5 C 276 LYS THR LEU LEU ARG ALA ILE GLY SER ARG GLY PHE ASP SEQRES 6 C 276 GLY LEU ILE LEU GLN SER PHE SER ASN PRO GLN THR VAL SEQRES 7 C 276 GLN GLU ILE LEU HIS GLN GLN MET PRO VAL VAL SER VAL SEQRES 8 C 276 ASP ARG GLU MET ASP ALA CYS PRO TRP PRO GLN VAL VAL SEQRES 9 C 276 THR ASP ASN PHE GLU ALA ALA LYS ALA ALA THR THR ALA SEQRES 10 C 276 PHE ARG GLN GLN GLY TYR GLN HIS VAL VAL VAL LEU THR SEQRES 11 C 276 SER GLU LEU GLU LEU SER ARG THR ARG GLN GLU ARG TYR SEQRES 12 C 276 ARG GLY ILE LEU ALA ALA ALA GLN ASP VAL ASP VAL LEU SEQRES 13 C 276 GLU VAL SER GLU SER SER TYR ASN HIS SER GLU VAL HIS SEQRES 14 C 276 GLN ARG LEU THR GLN LEU ILE THR GLN ASN ASP GLN LYS SEQRES 15 C 276 THR VAL ALA PHE ALA LEU LYS GLU ARG TRP LEU LEU GLU SEQRES 16 C 276 PHE PHE PRO ASN LEU ILE ILE SER GLY LEU ILE ASP ASN SEQRES 17 C 276 GLN THR VAL THR ALA THR GLY PHE ALA ASP THR ASP PHE SEQRES 18 C 276 ILE ARG ARG MET GLU PRO LYS LEU THR LEU ILE THR GLN SEQRES 19 C 276 ASN PRO PHE LEU MET GLY ALA SER SER ALA GLU ILE MET SEQRES 20 C 276 LEU ARG GLN LEU ALA GLY GLU LYS VAL ALA PRO GLU LYS SEQRES 21 C 276 MET VAL ILE PRO ALA LYS LEU GLN GLU GLY HIS HIS HIS SEQRES 22 C 276 HIS HIS HIS SEQRES 1 D 276 MET SER LEU THR GLN SER SER LYS LEU ILE ALA VAL ILE SEQRES 2 D 276 VAL ALA ASN ILE ASP ASP TYR PHE SER THR GLU LEU PHE SEQRES 3 D 276 LYS GLY ILE SER SER ILE LEU GLU SER ARG GLY TYR ILE SEQRES 4 D 276 GLY VAL LEU PHE ASP ALA ASN ALA ASP ILE GLU ARG GLU SEQRES 5 D 276 LYS THR LEU LEU ARG ALA ILE GLY SER ARG GLY PHE ASP SEQRES 6 D 276 GLY LEU ILE LEU GLN SER PHE SER ASN PRO GLN THR VAL SEQRES 7 D 276 GLN GLU ILE LEU HIS GLN GLN MET PRO VAL VAL SER VAL SEQRES 8 D 276 ASP ARG GLU MET ASP ALA CYS PRO TRP PRO GLN VAL VAL SEQRES 9 D 276 THR ASP ASN PHE GLU ALA ALA LYS ALA ALA THR THR ALA SEQRES 10 D 276 PHE ARG GLN GLN GLY TYR GLN HIS VAL VAL VAL LEU THR SEQRES 11 D 276 SER GLU LEU GLU LEU SER ARG THR ARG GLN GLU ARG TYR SEQRES 12 D 276 ARG GLY ILE LEU ALA ALA ALA GLN ASP VAL ASP VAL LEU SEQRES 13 D 276 GLU VAL SER GLU SER SER TYR ASN HIS SER GLU VAL HIS SEQRES 14 D 276 GLN ARG LEU THR GLN LEU ILE THR GLN ASN ASP GLN LYS SEQRES 15 D 276 THR VAL ALA PHE ALA LEU LYS GLU ARG TRP LEU LEU GLU SEQRES 16 D 276 PHE PHE PRO ASN LEU ILE ILE SER GLY LEU ILE ASP ASN SEQRES 17 D 276 GLN THR VAL THR ALA THR GLY PHE ALA ASP THR ASP PHE SEQRES 18 D 276 ILE ARG ARG MET GLU PRO LYS LEU THR LEU ILE THR GLN SEQRES 19 D 276 ASN PRO PHE LEU MET GLY ALA SER SER ALA GLU ILE MET SEQRES 20 D 276 LEU ARG GLN LEU ALA GLY GLU LYS VAL ALA PRO GLU LYS SEQRES 21 D 276 MET VAL ILE PRO ALA LYS LEU GLN GLU GLY HIS HIS HIS SEQRES 22 D 276 HIS HIS HIS HET CL D 1 1 HET EDO D3318 4 HET EDO D3319 4 HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 5 CL CL 1- FORMUL 6 EDO 2(C2 H6 O2) FORMUL 8 HOH *176(H2 O) HELIX 1 1 ASP A 79 SER A 95 1 17 HELIX 2 2 ASP A 108 SER A 121 1 14 HELIX 3 3 ASN A 134 HIS A 143 1 10 HELIX 4 4 ASP A 166 GLN A 180 1 15 HELIX 5 5 SER A 196 ALA A 208 1 13 HELIX 6 6 ASN A 224 GLN A 238 1 15 HELIX 7 7 LYS A 249 PHE A 257 1 9 HELIX 8 8 PHE A 257 SER A 263 1 7 HELIX 9 9 ASN A 295 ALA A 312 1 18 HELIX 10 10 ASP B 79 GLU B 94 1 16 HELIX 11 11 SER B 95 GLY B 97 5 3 HELIX 12 12 ASP B 108 ARG B 122 1 15 HELIX 13 13 ASN B 134 HIS B 143 1 10 HELIX 14 14 ASP B 166 GLN B 180 1 15 HELIX 15 15 LEU B 193 LEU B 195 5 3 HELIX 16 16 SER B 196 ALA B 208 1 13 HELIX 17 17 ASN B 224 GLN B 238 1 15 HELIX 18 18 LYS B 249 SER B 263 1 15 HELIX 19 19 ASN B 295 ALA B 312 1 18 HELIX 20 30 ASP D 79 SER D 95 1 17 HELIX 21 31 ASP D 108 ARG D 122 1 15 HELIX 22 32 ASN D 134 LEU D 142 1 9 HELIX 23 33 ASP D 166 GLN D 180 1 15 HELIX 24 34 LEU D 193 LEU D 195 5 3 HELIX 25 35 SER D 196 ALA D 208 1 13 HELIX 26 36 HIS D 225 GLN D 238 1 14 HELIX 27 37 LYS D 249 PHE D 257 1 9 HELIX 28 38 PHE D 257 SER D 263 1 7 HELIX 29 39 ASN D 295 GLY D 313 1 19 SHEET 1 A 6 ILE A 99 ASP A 104 0 SHEET 2 A 6 LEU A 69 VAL A 74 1 N VAL A 72 O PHE A 103 SHEET 3 A 6 GLY A 126 GLN A 130 1 O GLY A 126 N ALA A 71 SHEET 4 A 6 VAL A 148 VAL A 151 1 O VAL A 149 N LEU A 129 SHEET 5 A 6 GLN A 162 VAL A 164 1 O VAL A 163 N SER A 150 SHEET 6 A 6 LYS A 320 VAL A 322 1 O MET A 321 N GLN A 162 SHEET 1 B 4 ASP A 212 VAL A 218 0 SHEET 2 B 4 HIS A 185 SER A 191 1 N VAL A 188 O LEU A 216 SHEET 3 B 4 THR A 243 ALA A 247 1 O PHE A 246 N VAL A 187 SHEET 4 B 4 VAL A 271 GLY A 275 1 O THR A 272 N THR A 243 SHEET 1 C 2 LEU A 291 THR A 293 0 SHEET 2 C 2 LYS A 326 GLN A 328 -1 O GLN A 328 N LEU A 291 SHEET 1 D 6 ILE B 99 ASP B 104 0 SHEET 2 D 6 LEU B 69 VAL B 74 1 N VAL B 72 O PHE B 103 SHEET 3 D 6 GLY B 126 GLN B 130 1 O GLY B 126 N ALA B 71 SHEET 4 D 6 VAL B 148 VAL B 151 1 O VAL B 149 N LEU B 129 SHEET 5 D 6 GLN B 162 THR B 165 1 O VAL B 163 N SER B 150 SHEET 6 D 6 LYS B 320 ILE B 323 1 O MET B 321 N GLN B 162 SHEET 1 E 4 ASP B 212 VAL B 218 0 SHEET 2 E 4 HIS B 185 SER B 191 1 N VAL B 188 O LEU B 216 SHEET 3 E 4 THR B 243 ALA B 247 1 O PHE B 246 N VAL B 187 SHEET 4 E 4 VAL B 271 GLY B 275 1 O THR B 274 N ALA B 245 SHEET 1 F 2 LEU B 291 THR B 293 0 SHEET 2 F 2 LYS B 326 GLN B 328 -1 O LYS B 326 N THR B 293 SHEET 1 I 6 ILE D 99 ASP D 104 0 SHEET 2 I 6 LEU D 69 VAL D 74 1 N VAL D 72 O PHE D 103 SHEET 3 I 6 GLY D 126 LEU D 129 1 O GLY D 126 N ALA D 71 SHEET 4 I 6 VAL D 148 VAL D 151 1 O VAL D 151 N LEU D 129 SHEET 5 I 6 GLN D 162 THR D 165 1 O VAL D 163 N SER D 150 SHEET 6 I 6 LYS D 320 ILE D 323 1 O MET D 321 N GLN D 162 SHEET 1 J 4 ASP D 212 VAL D 218 0 SHEET 2 J 4 HIS D 185 SER D 191 1 N VAL D 188 O LEU D 216 SHEET 3 J 4 THR D 243 ALA D 247 1 O PHE D 246 N VAL D 187 SHEET 4 J 4 VAL D 271 GLY D 275 1 O THR D 272 N ALA D 245 SHEET 1 K 2 LEU D 291 THR D 293 0 SHEET 2 K 2 LYS D 326 GLN D 328 -1 O LYS D 326 N THR D 293 SITE 1 AC1 4 PRO A 135 GLN A 136 HOH D 2 ARG D 204 SITE 1 AC2 6 HOH D 4 PHE D 81 LYS D 249 GLU D 250 SITE 2 AC2 6 PHE D 276 EDO D3319 SITE 1 AC3 5 PHE D 81 ASP D 152 ARG D 202 GLN D 294 SITE 2 AC3 5 EDO D3318 CRYST1 40.570 109.328 113.342 90.00 95.17 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024649 0.000000 0.002230 0.00000 SCALE2 0.000000 0.009147 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008859 0.00000