HEADER STRUCTURAL PROTEIN 24-SEP-09 3JZZ TITLE CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA (STRAIN: PA110594) TYPEIV TITLE 2 PILIN IN SPACE GROUP P212121 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE IV PILIN STRUCTURAL SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 34-178; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 STRAIN: PA110594; SOURCE 5 GENE: PILA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ORIGAMI(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: D-TOPO-PET151 KEYWDS PILIN, PILA, PILUS, METHYLATION, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.NGUYEN,S.G.JACKSON,F.AIDOO,M.S.JUNOP,L.L.BURROWS REVDAT 3 06-SEP-23 3JZZ 1 SEQADV REVDAT 2 16-FEB-10 3JZZ 1 JRNL REVDAT 1 24-NOV-09 3JZZ 0 JRNL AUTH Y.NGUYEN,S.G.JACKSON,F.AIDOO,M.JUNOP,L.L.BURROWS JRNL TITL STRUCTURAL CHARACTERIZATION OF NOVEL PSEUDOMONAS AERUGINOSA JRNL TITL 2 TYPE IV PILINS. JRNL REF J.MOL.BIOL. V. 395 491 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 19895819 JRNL DOI 10.1016/J.JMB.2009.10.070 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 16094 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1608 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.9660 - 3.5493 0.97 1411 154 0.1865 0.1881 REMARK 3 2 3.5493 - 2.8180 1.00 1352 150 0.1696 0.2046 REMARK 3 3 2.8180 - 2.4620 1.00 1333 148 0.1868 0.2305 REMARK 3 4 2.4620 - 2.2370 1.00 1330 148 0.1864 0.2278 REMARK 3 5 2.2370 - 2.0768 1.00 1331 148 0.1727 0.2508 REMARK 3 6 2.0768 - 1.9543 1.00 1304 146 0.1719 0.2136 REMARK 3 7 1.9543 - 1.8565 0.99 1296 145 0.1588 0.2103 REMARK 3 8 1.8565 - 1.7757 0.98 1307 147 0.1537 0.2476 REMARK 3 9 1.7757 - 1.7073 0.98 1288 142 0.1498 0.2103 REMARK 3 10 1.7073 - 1.6484 0.99 1291 143 0.1476 0.2485 REMARK 3 11 1.6484 - 1.5970 0.96 1243 137 0.1704 0.2691 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 34.19 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.023 1086 REMARK 3 ANGLE : 1.891 1491 REMARK 3 CHIRALITY : 0.084 188 REMARK 3 PLANARITY : 0.006 194 REMARK 3 DIHEDRAL : 15.874 372 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3JZZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000055372. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.10000 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL-CUT CRYSTAL REMARK 200 OPTICS : DOUBLE-CRYSTAL MONOCHROMATOR REMARK 200 SI(111), BEAM FOCUSED BY A REMARK 200 TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16182 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.597 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 3JYZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 20% W/V PEG 1000, REMARK 280 8% V/V ETHYLENE GLYCOL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 14.73000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.40400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.43450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.40400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 14.73000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 22.43450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 143 -165.88 -128.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DZO RELATED DB: PDB REMARK 900 PSEUDOMONAS AERUGINOSA PAK TYPE IV A REMARK 900 RELATED ID: 1QVE RELATED DB: PDB REMARK 900 PSEUDOMONAS AERUGINOSA K122-4 TYPE IV A REMARK 900 RELATED ID: 1AY2 RELATED DB: PDB REMARK 900 NEISSERIA GONORRHOEAE MS11 TYPE IV A REMARK 900 RELATED ID: 1Q5F RELATED DB: PDB REMARK 900 SALMONELLA TYPHI TYPE IV B REMARK 900 RELATED ID: 1ZWT RELATED DB: PDB REMARK 900 ENTEROPATHOGENIC ESCHERICHIA COLI E2348/69 TYPE IV B REMARK 900 RELATED ID: 1OQV RELATED DB: PDB REMARK 900 VIBRIO CHOLERAE RT4236 TYPE IV B REMARK 900 RELATED ID: 3JYZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA (STRAIN: PA110594) REMARK 900 TYPEIV PILIN IN SPACE GROUP P41212 DBREF 3JZZ A 28 172 UNP Q8KQ36 Q8KQ36_PSEAE 34 178 SEQADV 3JZZ ASP A 25 UNP Q8KQ36 EXPRESSION TAG SEQADV 3JZZ PRO A 26 UNP Q8KQ36 EXPRESSION TAG SEQADV 3JZZ PHE A 27 UNP Q8KQ36 EXPRESSION TAG SEQRES 1 A 148 ASP PRO PHE THR VAL ARG THR ARG VAL SER GLU GLY LEU SEQRES 2 A 148 VAL LEU ALA GLU PRO ALA LYS LEU MET ILE SER THR ASP SEQRES 3 A 148 GLY SER ALA SER THR ALA ASP LEU THR ARG ALA THR THR SEQRES 4 A 148 THR TRP ASN GLN GLN SER ASN ASN LEU GLY ALA SER SER SEQRES 5 A 148 LYS TYR VAL THR SER VAL LEU MET ASP ALA GLY ASN THR SEQRES 6 A 148 GLY VAL ILE THR ILE THR TYR VAL ALA ASP GLN VAL GLY SEQRES 7 A 148 LEU PRO THR ALA GLY ASN THR LEU ILE LEU SER PRO TYR SEQRES 8 A 148 ILE ASN ASP GLY ASN THR ARG THR ALA LEU ALA THR ALA SEQRES 9 A 148 VAL ALA ALA GLY THR ARG GLY THR ILE ASP TRP ALA CYS SEQRES 10 A 148 THR SER ALA SER ASN ALA THR ALA THR ALA GLN GLY PHE SEQRES 11 A 148 THR GLY MET ALA ALA GLY SER VAL PRO GLN GLU PHE ALA SEQRES 12 A 148 PRO ALA GLN CYS ARG FORMUL 2 HOH *217(H2 O) HELIX 1 1 ASP A 25 VAL A 38 1 14 HELIX 2 2 ALA A 40 ASP A 50 1 11 HELIX 3 3 SER A 54 LEU A 72 1 19 HELIX 4 4 VAL A 97 GLY A 102 1 6 HELIX 5 5 LEU A 125 GLY A 132 1 8 HELIX 6 6 ASN A 146 GLN A 152 1 7 HELIX 7 7 PRO A 163 ALA A 167 5 5 HELIX 8 8 PRO A 168 ARG A 172 5 5 SHEET 1 A 4 VAL A 79 MET A 84 0 SHEET 2 A 4 ILE A 92 TYR A 96 -1 O THR A 93 N LEU A 83 SHEET 3 A 4 THR A 109 ASN A 117 -1 O LEU A 112 N ILE A 92 SHEET 4 A 4 ARG A 122 ALA A 124 -1 O THR A 123 N ILE A 116 SHEET 1 B 4 VAL A 79 MET A 84 0 SHEET 2 B 4 ILE A 92 TYR A 96 -1 O THR A 93 N LEU A 83 SHEET 3 B 4 THR A 109 ASN A 117 -1 O LEU A 112 N ILE A 92 SHEET 4 B 4 THR A 136 THR A 142 -1 O THR A 136 N ASN A 117 SSBOND 1 CYS A 141 CYS A 171 1555 1555 2.04 CRYST1 29.460 44.869 88.808 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.033944 0.000000 0.000000 0.00000 SCALE2 0.000000 0.022287 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011260 0.00000