HEADER PROTEIN BINDING 24-SEP-09 3K05 TITLE THE CRYSTAL STRUCTURE OF MDC1 BRCT T2067D IN COMPLEX WITH A MINIMAL TITLE 2 RECOGNITION TETRAPEPTIDE WITH AN AMIDATED C-TERMINUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEDIATOR OF DNA DAMAGE CHECKPOINT PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: BRCT DOMAIN (UNP RESIDUES 1892 TO 2089); COMPND 5 SYNONYM: NUCLEAR FACTOR WITH BRCT DOMAINS 1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PHOSPHO PEPTIDE; COMPND 10 CHAIN: C, D; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KIAA0170, MDC1, NFBD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 GOLD; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PKM596; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS. THE PEPTIDE SOURCE 15 IS CHEMICALLY SYNTHESIZED. KEYWDS BRCT DOMAIN, PROTEIN-PEPTIDE COMPLEX, PHOSPHO PROTEIN BINDING, H2AX, KEYWDS 2 DNA DAMAGE RESPONSE, CELL CYCLE, DNA DAMAGE, DNA REPAIR, NUCLEUS, KEYWDS 3 PHOSPHOPROTEIN, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR S.J.CAMPBELL,R.A.EDWARDS,J.N.GLOVER REVDAT 4 13-OCT-21 3K05 1 REMARK DBREF SEQADV LINK REVDAT 3 01-NOV-17 3K05 1 REMARK REVDAT 2 28-JUL-10 3K05 1 AUTHOR REVDAT 1 02-MAR-10 3K05 0 JRNL AUTH S.J.CAMPBELL,R.A.EDWARDS,J.N.GLOVER JRNL TITL COMPARISON OF THE STRUCTURES AND PEPTIDE BINDING JRNL TITL 2 SPECIFICITIES OF THE BRCT DOMAINS OF MDC1 AND BRCA1 JRNL REF STRUCTURE V. 18 167 2010 JRNL REFN ISSN 0969-2126 JRNL PMID 20159462 JRNL DOI 10.1016/J.STR.2009.12.008 REMARK 2 REMARK 2 RESOLUTION. 1.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0066 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 92958 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4871 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.33 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6513 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.3360 REMARK 3 BIN FREE R VALUE SET COUNT : 336 REMARK 3 BIN FREE R VALUE : 0.3700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3105 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 468 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.16000 REMARK 3 B22 (A**2) : 0.37000 REMARK 3 B33 (A**2) : -0.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.061 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.055 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.028 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.444 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3305 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4510 ; 1.306 ; 2.010 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 423 ; 5.382 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;31.455 ;22.794 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 545 ;10.848 ;15.055 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;17.977 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 497 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2544 ; 0.008 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2074 ; 1.062 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3382 ; 1.727 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1231 ; 2.413 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1123 ; 3.728 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3305 ; 1.277 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 468 ; 3.825 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3220 ; 2.831 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1892 A 2085 REMARK 3 ORIGIN FOR THE GROUP (A): 11.3517 -6.3348 -18.9133 REMARK 3 T TENSOR REMARK 3 T11: 0.0005 T22: 0.0206 REMARK 3 T33: 0.0032 T12: -0.0025 REMARK 3 T13: 0.0006 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.4983 L22: 1.6615 REMARK 3 L33: 0.8715 L12: -0.2072 REMARK 3 L13: 0.3101 L23: -0.5118 REMARK 3 S TENSOR REMARK 3 S11: 0.0113 S12: -0.0413 S13: 0.0145 REMARK 3 S21: -0.0001 S22: -0.0262 S23: -0.0150 REMARK 3 S31: -0.0042 S32: 0.0297 S33: 0.0149 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1892 B 2085 REMARK 3 ORIGIN FOR THE GROUP (A): 18.0702 -23.8535 -42.3369 REMARK 3 T TENSOR REMARK 3 T11: 0.0044 T22: 0.0179 REMARK 3 T33: 0.0086 T12: 0.0077 REMARK 3 T13: 0.0025 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.4891 L22: 0.9018 REMARK 3 L33: 0.3429 L12: 0.4676 REMARK 3 L13: -0.0256 L23: -0.0171 REMARK 3 S TENSOR REMARK 3 S11: 0.0095 S12: 0.0259 S13: -0.0395 REMARK 3 S21: 0.0131 S22: 0.0091 S23: -0.0242 REMARK 3 S31: 0.0066 S32: 0.0232 S33: -0.0187 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 139 C 142 REMARK 3 ORIGIN FOR THE GROUP (A): 11.0228 -11.4171 -29.6613 REMARK 3 T TENSOR REMARK 3 T11: 0.0471 T22: 0.0560 REMARK 3 T33: 0.0530 T12: 0.0010 REMARK 3 T13: 0.0029 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 1.5115 L22: 2.5233 REMARK 3 L33: 3.6100 L12: -0.3908 REMARK 3 L13: -0.2460 L23: -0.3359 REMARK 3 S TENSOR REMARK 3 S11: -0.0169 S12: 0.0132 S13: -0.1668 REMARK 3 S21: -0.1086 S22: -0.0189 S23: 0.0111 REMARK 3 S31: 0.1471 S32: -0.1269 S33: 0.0358 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 139 D 142 REMARK 3 ORIGIN FOR THE GROUP (A): 12.9551 -19.9790 -33.3908 REMARK 3 T TENSOR REMARK 3 T11: 0.0272 T22: 0.0109 REMARK 3 T33: 0.0247 T12: -0.0031 REMARK 3 T13: 0.0174 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 4.9532 L22: 9.9675 REMARK 3 L33: 4.2703 L12: 1.3756 REMARK 3 L13: -1.8815 L23: -3.9939 REMARK 3 S TENSOR REMARK 3 S11: 0.0037 S12: -0.0950 S13: -0.0923 REMARK 3 S21: 0.2948 S22: 0.1285 S23: 0.3134 REMARK 3 S31: 0.0329 S32: -0.0172 S33: -0.1322 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3K05 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000055378. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.115872 REMARK 200 MONOCHROMATOR : DOUBLE FLAT CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 97906 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.330 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.48900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, HEPES, PH 8.0, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.82100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.70400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.29000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.70400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.82100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.29000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A MONOMER BOUND TO A PHOSPHO REMARK 300 TETRAPEPTIDE. THERE ARE 2 BIOLOGICAL UNITS IN THE ASYMMETRIC UNIT REMARK 300 (CHAINS A & C AND CHAINS B & D REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1890 REMARK 465 LEU A 2084 REMARK 465 GLU A 2085 REMARK 465 MET A 2086 REMARK 465 SER A 2087 REMARK 465 SER A 2088 REMARK 465 THR A 2089 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 2090 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 2091 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3K0H RELATED DB: PDB REMARK 900 RELATED ID: 3K0K RELATED DB: PDB DBREF 3K05 A 1891 2089 UNP Q14676 MDC1_HUMAN 1891 2089 DBREF 3K05 B 1891 2089 UNP Q14676 MDC1_HUMAN 1891 2089 DBREF 3K05 C 139 143 PDB 3K05 3K05 139 143 DBREF 3K05 D 139 143 PDB 3K05 3K05 139 143 SEQADV 3K05 GLY A 1890 UNP Q14676 EXPRESSION TAG SEQADV 3K05 ASP A 2067 UNP Q14676 THR 2067 ENGINEERED MUTATION SEQADV 3K05 GLY B 1890 UNP Q14676 EXPRESSION TAG SEQADV 3K05 ASP B 2067 UNP Q14676 THR 2067 ENGINEERED MUTATION SEQRES 1 A 200 GLY THR ALA PRO LYS VAL LEU PHE THR GLY VAL VAL ASP SEQRES 2 A 200 ALA ARG GLY GLU ARG ALA VAL LEU ALA LEU GLY GLY SER SEQRES 3 A 200 LEU ALA GLY SER ALA ALA GLU ALA SER HIS LEU VAL THR SEQRES 4 A 200 ASP ARG ILE ARG ARG THR VAL LYS PHE LEU CYS ALA LEU SEQRES 5 A 200 GLY ARG GLY ILE PRO ILE LEU SER LEU ASP TRP LEU HIS SEQRES 6 A 200 GLN SER ARG LYS ALA GLY PHE PHE LEU PRO PRO ASP GLU SEQRES 7 A 200 TYR VAL VAL THR ASP PRO GLU GLN GLU LYS ASN PHE GLY SEQRES 8 A 200 PHE SER LEU GLN ASP ALA LEU SER ARG ALA ARG GLU ARG SEQRES 9 A 200 ARG LEU LEU GLU GLY TYR GLU ILE TYR VAL THR PRO GLY SEQRES 10 A 200 VAL GLN PRO PRO PRO PRO GLN MET GLY GLU ILE ILE SER SEQRES 11 A 200 CYS CYS GLY GLY THR TYR LEU PRO SER MET PRO ARG SER SEQRES 12 A 200 TYR LYS PRO GLN ARG VAL VAL ILE THR CYS PRO GLN ASP SEQRES 13 A 200 PHE PRO HIS CYS SER ILE PRO LEU ARG VAL GLY LEU PRO SEQRES 14 A 200 LEU LEU SER PRO GLU PHE LEU LEU ASP GLY VAL LEU LYS SEQRES 15 A 200 GLN GLU ALA LYS PRO GLU ALA PHE VAL LEU SER PRO LEU SEQRES 16 A 200 GLU MET SER SER THR SEQRES 1 B 200 GLY THR ALA PRO LYS VAL LEU PHE THR GLY VAL VAL ASP SEQRES 2 B 200 ALA ARG GLY GLU ARG ALA VAL LEU ALA LEU GLY GLY SER SEQRES 3 B 200 LEU ALA GLY SER ALA ALA GLU ALA SER HIS LEU VAL THR SEQRES 4 B 200 ASP ARG ILE ARG ARG THR VAL LYS PHE LEU CYS ALA LEU SEQRES 5 B 200 GLY ARG GLY ILE PRO ILE LEU SER LEU ASP TRP LEU HIS SEQRES 6 B 200 GLN SER ARG LYS ALA GLY PHE PHE LEU PRO PRO ASP GLU SEQRES 7 B 200 TYR VAL VAL THR ASP PRO GLU GLN GLU LYS ASN PHE GLY SEQRES 8 B 200 PHE SER LEU GLN ASP ALA LEU SER ARG ALA ARG GLU ARG SEQRES 9 B 200 ARG LEU LEU GLU GLY TYR GLU ILE TYR VAL THR PRO GLY SEQRES 10 B 200 VAL GLN PRO PRO PRO PRO GLN MET GLY GLU ILE ILE SER SEQRES 11 B 200 CYS CYS GLY GLY THR TYR LEU PRO SER MET PRO ARG SER SEQRES 12 B 200 TYR LYS PRO GLN ARG VAL VAL ILE THR CYS PRO GLN ASP SEQRES 13 B 200 PHE PRO HIS CYS SER ILE PRO LEU ARG VAL GLY LEU PRO SEQRES 14 B 200 LEU LEU SER PRO GLU PHE LEU LEU ASP GLY VAL LEU LYS SEQRES 15 B 200 GLN GLU ALA LYS PRO GLU ALA PHE VAL LEU SER PRO LEU SEQRES 16 B 200 GLU MET SER SER THR SEQRES 1 C 5 SEP GLN GLU TYR NH2 SEQRES 1 D 5 SEP GLN GLU TYR NH2 MODRES 3K05 SEP C 139 SER PHOSPHOSERINE MODRES 3K05 SEP D 139 SER PHOSPHOSERINE HET SEP C 139 10 HET NH2 C 143 1 HET SEP D 139 10 HET NH2 D 143 1 HET GOL A 1 6 HET GOL B 1 6 HET GOL B2090 6 HET GOL B2091 6 HETNAM SEP PHOSPHOSERINE HETNAM NH2 AMINO GROUP HETNAM GOL GLYCEROL HETSYN SEP PHOSPHONOSERINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SEP 2(C3 H8 N O6 P) FORMUL 3 NH2 2(H2 N) FORMUL 5 GOL 4(C3 H8 O3) FORMUL 9 HOH *468(H2 O) HELIX 1 1 ASP A 1902 LEU A 1912 1 11 HELIX 2 2 SER A 1919 ALA A 1923 5 5 HELIX 3 3 THR A 1934 GLY A 1944 1 11 HELIX 4 4 SER A 1949 GLY A 1960 1 12 HELIX 5 5 PRO A 1965 VAL A 1969 5 5 HELIX 6 6 ASP A 1972 GLY A 1980 1 9 HELIX 7 7 SER A 1982 ARG A 1993 1 12 HELIX 8 8 PRO A 2010 CYS A 2021 1 12 HELIX 9 9 CYS A 2042 HIS A 2048 5 7 HELIX 10 10 CYS A 2049 GLY A 2056 1 8 HELIX 11 11 PRO A 2062 GLN A 2072 1 11 HELIX 12 12 LYS A 2075 VAL A 2080 5 6 HELIX 13 13 ASP B 1902 LEU B 1912 1 11 HELIX 14 14 SER B 1919 ALA B 1923 5 5 HELIX 15 15 THR B 1934 GLY B 1944 1 11 HELIX 16 16 LEU B 1950 GLY B 1960 1 11 HELIX 17 17 PRO B 1965 VAL B 1969 5 5 HELIX 18 18 ASP B 1972 GLY B 1980 1 9 HELIX 19 19 SER B 1982 ARG B 1993 1 12 HELIX 20 20 PRO B 2010 CYS B 2021 1 12 HELIX 21 21 CYS B 2042 HIS B 2048 5 7 HELIX 22 22 CYS B 2049 GLY B 2056 1 8 HELIX 23 23 PRO B 2062 GLN B 2072 1 11 HELIX 24 24 LYS B 2075 PHE B 2079 5 5 SHEET 1 A 4 SER A1915 LEU A1916 0 SHEET 2 A 4 LYS A1894 PHE A1897 1 N VAL A1895 O SER A1915 SHEET 3 A 4 HIS A1925 VAL A1927 1 O HIS A1925 N LEU A1896 SHEET 4 A 4 ILE A1947 LEU A1948 1 O LEU A1948 N LEU A1926 SHEET 1 B 4 THR A2024 LEU A2026 0 SHEET 2 B 4 GLU A2000 VAL A2003 1 N ILE A2001 O LEU A2026 SHEET 3 B 4 ARG A2037 ILE A2040 1 O ILE A2040 N TYR A2002 SHEET 4 B 4 LEU A2059 LEU A2060 1 O LEU A2060 N VAL A2039 SHEET 1 C 4 SER B1915 LEU B1916 0 SHEET 2 C 4 LYS B1894 PHE B1897 1 N VAL B1895 O SER B1915 SHEET 3 C 4 HIS B1925 THR B1928 1 O VAL B1927 N LEU B1896 SHEET 4 C 4 ILE B1947 SER B1949 1 O LEU B1948 N LEU B1926 SHEET 1 D 4 THR B2024 LEU B2026 0 SHEET 2 D 4 GLU B2000 VAL B2003 1 N ILE B2001 O LEU B2026 SHEET 3 D 4 ARG B2037 ILE B2040 1 O ILE B2040 N TYR B2002 SHEET 4 D 4 LEU B2059 LEU B2060 1 O LEU B2060 N VAL B2039 LINK C SEP C 139 N GLN C 140 1555 1555 1.33 LINK C TYR C 142 N NH2 C 143 1555 1555 1.32 LINK C SEP D 139 N GLN D 140 1555 1555 1.33 LINK C TYR D 142 N NH2 D 143 1555 1555 1.33 CISPEP 1 GLN A 2008 PRO A 2009 0 -4.30 CISPEP 2 GLN B 2008 PRO B 2009 0 -3.29 SITE 1 AC1 8 GLN A2008 GLU A2063 HOH B 69 HOH B 186 SITE 2 AC1 8 VAL B1901 ALA B1903 TYR C 142 NH2 C 143 SITE 1 AC2 8 HOH B 78 HOH B 113 HOH B 300 HOH B 389 SITE 2 AC2 8 ARG B1943 ARG B1994 SER B2019 GLY B2022 SITE 1 AC3 10 HOH A 71 ARG A1943 ARG A1994 SER A2019 SITE 2 AC3 10 CYS A2020 GLY A2022 HOH B 37 HOH B 289 SITE 3 AC3 10 PRO B2047 SER B2050 SITE 1 AC4 10 HOH B 82 HOH B 84 HOH B 235 HOH B 409 SITE 2 AC4 10 PHE B1897 GLY B1899 VAL B1900 LYS B1936 SITE 3 AC4 10 GLN C 140 SEP D 139 CRYST1 55.642 74.580 103.408 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017972 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013408 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009670 0.00000