HEADER HYDROLASE 25-SEP-09 3K0W TITLE CRYSTAL STRUCTURE OF THE TANDEM IG-LIKE C2-TYPE 2 DOMAINS OF THE HUMAN TITLE 2 MUCOSA-ASSOCIATED LYMPHOID TISSUE LYMPHOMA TRANSLOCATION PROTEIN 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MUCOSA-ASSOCIATED LYMPHOID TISSUE LYMPHOMA TRANSLOCATION COMPND 3 PROTEIN 1, ISOFORM 2; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: TANDEM IG-LIKE C2-TYPE 2 DOMAIN: UNP RESIDUES 128-326; COMPND 6 SYNONYM: MALT LYMPHOMA-ASSOCIATED TRANSLOCATION, PARACASPASE; COMPND 7 EC: 3.4.22.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MALT1, MLT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A-LIC KEYWDS HYDROLASE, IMMUNOGLOBULIN DOMAIN, NUCLEUS, PROTEASE, CHROMOSOMAL KEYWDS 2 TRANSLOCATION, LYMPHOMA, UBL CONJUGATION PATHWAY, STRUCTURAL KEYWDS 3 GENOMICS CONSORTIUM, SGC, ALTERNATIVE SPLICING, CHROMOSOMAL KEYWDS 4 REARRANGEMENT, CYTOPLASM, DISULFIDE BOND, PHOSPHOPROTEIN, KEYWDS 5 POLYMORPHISM EXPDTA X-RAY DIFFRACTION AUTHOR J.R.WALKER,L.QIU,C.BUTLER-COLE,J.WEIGELT,C.BOUNTRA,C.H.ARROWSMITH, AUTHOR 2 A.M.EDWARDS,A.BOCHKAREV,S.DHE-PAGANON,STRUCTURAL GENOMICS CONSORTIUM AUTHOR 3 (SGC) REVDAT 2 06-SEP-23 3K0W 1 REMARK SEQADV REVDAT 1 27-OCT-09 3K0W 0 JRNL AUTH J.R.WALKER,L.QIU,C.BUTLER-COLE,C.BOUNTRA,J.WEIGELT, JRNL AUTH 2 C.H.ARROWSMITH,A.M.EDWARDS,A.BOCHKAREV,S.DHE-PAGANON JRNL TITL STRUCTURE OF THE TANDEM IG-LIKE C2-TYPE 2 DOMAINS OF THE JRNL TITL 2 HUMAN MUCOSA-ASSOCIATED LYMPHOID TISSUE LYMPHOMA JRNL TITL 3 TRANSLOCATION PROTEIN 1. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 11447 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 549 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.07 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2506 REMARK 3 BIN R VALUE (WORKING SET) : 0.2674 REMARK 3 BIN FREE R VALUE : 0.3238 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.22 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 138 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1457 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 14 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 96.13 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 87.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.09910 REMARK 3 B22 (A**2) : -1.09910 REMARK 3 B33 (A**2) : 2.19820 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : NULL ; NULL ; NULL REMARK 3 BOND ANGLES : NULL ; NULL ; NULL REMARK 3 TORSION ANGLES : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS : NULL ; NULL ; NULL REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : NULL ; NULL ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : NULL ; NULL ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : NULL REMARK 3 OTHER TORSION ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3K0W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055405. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97920 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11498 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 40.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 18.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08200 REMARK 200 FOR THE DATA SET : 43.4400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.8 REMARK 200 DATA REDUNDANCY IN SHELL : 17.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.79100 REMARK 200 FOR SHELL : 2.820 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3BFO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1:1 VOLUME RATIO OF PROTEIN SOLUTION REMARK 280 (10 MG/ML) AND RESERVOIR SOLUTION (1.5 M MAGNESIUM CHLORIDE, 0.1 REMARK 280 M BICINE PH 9.0), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 121.44867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 60.72433 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 121.44867 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 60.72433 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 121.44867 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 60.72433 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 121.44867 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 60.72433 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -45.17750 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 78.24973 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -45.17750 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 78.24973 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 60.72433 REMARK 350 BIOMT1 4 0.500000 0.866025 0.000000 -45.17750 REMARK 350 BIOMT2 4 0.866025 -0.500000 0.000000 78.24973 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 60.72433 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 109 REMARK 465 GLY A 110 REMARK 465 SER A 111 REMARK 465 SER A 112 REMARK 465 HIS A 113 REMARK 465 HIS A 114 REMARK 465 HIS A 115 REMARK 465 HIS A 116 REMARK 465 HIS A 117 REMARK 465 HIS A 118 REMARK 465 SER A 119 REMARK 465 SER A 120 REMARK 465 GLY A 121 REMARK 465 LEU A 122 REMARK 465 VAL A 123 REMARK 465 PRO A 124 REMARK 465 ARG A 125 REMARK 465 GLY A 126 REMARK 465 LEU A 311 REMARK 465 ASN A 312 REMARK 465 ASN A 313 REMARK 465 LEU A 314 REMARK 465 GLY A 315 REMARK 465 HIS A 316 REMARK 465 PRO A 317 REMARK 465 ASP A 318 REMARK 465 ASN A 319 REMARK 465 LYS A 320 REMARK 465 GLU A 321 REMARK 465 GLN A 322 REMARK 465 THR A 323 REMARK 465 THR A 324 REMARK 465 ASP A 325 REMARK 465 GLN A 326 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 165 CE NZ REMARK 470 ASN A 194 CG OD1 ND2 REMARK 470 PHE A 198 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 217 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 237 CG CD CE NZ REMARK 470 ARG A 296 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 303 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 155 51.13 -94.40 REMARK 500 MET A 163 -121.33 58.68 REMARK 500 ALA A 179 78.96 -156.34 REMARK 500 ASN A 195 -65.47 57.52 REMARK 500 THR A 197 -166.97 -65.66 REMARK 500 PHE A 198 133.51 -179.52 REMARK 500 GLU A 264 -5.58 68.93 REMARK 500 ASN A 294 -129.04 -133.47 REMARK 500 ASP A 309 -154.73 -151.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BFO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF IG-LIKE C2-TYPE 2 DOMAIN OF THE HUMAN MUCOSA- REMARK 900 ASSOCIATED LYMPHOID TISSUE LYMPHOMA TRANSLOCATION PROTEIN 1 REMARK 900 RELATED ID: 2G7R RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF THE DEATH DOMAIN OF THE HUMAN MUCOSA ASSOCIATED REMARK 900 LYMPHOID TISSUE LYMPHOMA TRANSLOCATION PROTEIN 1 DBREF 3K0W A 128 326 UNP Q9UDY8-2 MALT1_HUMAN 128 326 SEQADV 3K0W MET A 109 UNP Q9UDY8-2 EXPRESSION TAG SEQADV 3K0W GLY A 110 UNP Q9UDY8-2 EXPRESSION TAG SEQADV 3K0W SER A 111 UNP Q9UDY8-2 EXPRESSION TAG SEQADV 3K0W SER A 112 UNP Q9UDY8-2 EXPRESSION TAG SEQADV 3K0W HIS A 113 UNP Q9UDY8-2 EXPRESSION TAG SEQADV 3K0W HIS A 114 UNP Q9UDY8-2 EXPRESSION TAG SEQADV 3K0W HIS A 115 UNP Q9UDY8-2 EXPRESSION TAG SEQADV 3K0W HIS A 116 UNP Q9UDY8-2 EXPRESSION TAG SEQADV 3K0W HIS A 117 UNP Q9UDY8-2 EXPRESSION TAG SEQADV 3K0W HIS A 118 UNP Q9UDY8-2 EXPRESSION TAG SEQADV 3K0W SER A 119 UNP Q9UDY8-2 EXPRESSION TAG SEQADV 3K0W SER A 120 UNP Q9UDY8-2 EXPRESSION TAG SEQADV 3K0W GLY A 121 UNP Q9UDY8-2 EXPRESSION TAG SEQADV 3K0W LEU A 122 UNP Q9UDY8-2 EXPRESSION TAG SEQADV 3K0W VAL A 123 UNP Q9UDY8-2 EXPRESSION TAG SEQADV 3K0W PRO A 124 UNP Q9UDY8-2 EXPRESSION TAG SEQADV 3K0W ARG A 125 UNP Q9UDY8-2 EXPRESSION TAG SEQADV 3K0W GLY A 126 UNP Q9UDY8-2 EXPRESSION TAG SEQADV 3K0W SER A 127 UNP Q9UDY8-2 EXPRESSION TAG SEQRES 1 A 218 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 218 LEU VAL PRO ARG GLY SER LYS ILE THR VAL ASN PRO GLU SEQRES 3 A 218 SER LYS ALA VAL LEU ALA GLY GLN PHE VAL LYS LEU CYS SEQRES 4 A 218 CYS ARG ALA THR GLY HIS PRO PHE VAL GLN TYR GLN TRP SEQRES 5 A 218 PHE LYS MET ASN LYS GLU ILE PRO ASN GLY ASN THR SER SEQRES 6 A 218 GLU LEU ILE PHE ASN ALA VAL HIS VAL LYS ASP ALA GLY SEQRES 7 A 218 PHE TYR VAL CYS ARG VAL ASN ASN ASN PHE THR PHE GLU SEQRES 8 A 218 PHE SER GLN TRP SER GLN LEU ASP VAL CYS ASP ILE PRO SEQRES 9 A 218 GLU SER PHE GLN ARG SER VAL ASP GLY VAL SER GLU SER SEQRES 10 A 218 LYS LEU GLN ILE CYS VAL GLU PRO THR SER GLN LYS LEU SEQRES 11 A 218 MET PRO GLY SER THR LEU VAL LEU GLN CYS VAL ALA VAL SEQRES 12 A 218 GLY SER PRO ILE PRO HIS TYR GLN TRP PHE LYS ASN GLU SEQRES 13 A 218 LEU PRO LEU THR HIS GLU THR LYS LYS LEU TYR MET VAL SEQRES 14 A 218 PRO TYR VAL ASP LEU GLU HIS GLN GLY THR TYR TRP CYS SEQRES 15 A 218 HIS VAL TYR ASN ASP ARG ASP SER GLN ASP SER LYS LYS SEQRES 16 A 218 VAL GLU ILE ILE ILE ASP GLU LEU ASN ASN LEU GLY HIS SEQRES 17 A 218 PRO ASP ASN LYS GLU GLN THR THR ASP GLN HET CL A 401 1 HETNAM CL CHLORIDE ION FORMUL 2 CL CL 1- FORMUL 3 HOH *14(H2 O) HELIX 1 1 HIS A 181 ALA A 185 5 5 HELIX 2 2 PRO A 212 GLN A 216 5 5 HELIX 3 3 ASP A 281 GLN A 285 5 5 SHEET 1 A 2 ILE A 129 VAL A 131 0 SHEET 2 A 2 ARG A 149 ALA A 150 -1 O ARG A 149 N VAL A 131 SHEET 1 B 5 LYS A 136 LEU A 139 0 SHEET 2 B 5 SER A 204 CYS A 209 1 O ASP A 207 N LYS A 136 SHEET 3 B 5 GLY A 186 ASN A 193 -1 N GLY A 186 O LEU A 206 SHEET 4 B 5 GLN A 157 LYS A 162 -1 N GLN A 159 O ARG A 191 SHEET 5 B 5 LYS A 165 GLU A 166 -1 O LYS A 165 N LYS A 162 SHEET 1 C 4 LYS A 136 LEU A 139 0 SHEET 2 C 4 SER A 204 CYS A 209 1 O ASP A 207 N LYS A 136 SHEET 3 C 4 GLY A 186 ASN A 193 -1 N GLY A 186 O LEU A 206 SHEET 4 C 4 GLU A 199 PHE A 200 -1 O GLU A 199 N VAL A 192 SHEET 1 D 2 VAL A 144 CYS A 147 0 SHEET 2 D 2 GLU A 174 PHE A 177 -1 O PHE A 177 N VAL A 144 SHEET 1 E 2 GLN A 228 VAL A 231 0 SHEET 2 E 2 VAL A 249 VAL A 251 -1 O VAL A 249 N CYS A 230 SHEET 1 F 5 GLN A 236 LEU A 238 0 SHEET 2 F 5 VAL A 304 ILE A 308 1 O ILE A 307 N LEU A 238 SHEET 3 F 5 GLY A 286 TYR A 293 -1 N TYR A 288 O VAL A 304 SHEET 4 F 5 HIS A 257 LYS A 262 -1 N PHE A 261 O TRP A 289 SHEET 5 F 5 LEU A 265 PRO A 266 -1 O LEU A 265 N LYS A 262 SHEET 1 G 4 GLN A 236 LEU A 238 0 SHEET 2 G 4 VAL A 304 ILE A 308 1 O ILE A 307 N LEU A 238 SHEET 3 G 4 GLY A 286 TYR A 293 -1 N TYR A 288 O VAL A 304 SHEET 4 G 4 SER A 298 ASP A 300 -1 O GLN A 299 N VAL A 292 SHEET 1 H 2 LEU A 244 GLN A 247 0 SHEET 2 H 2 LEU A 274 VAL A 277 -1 O TYR A 275 N LEU A 246 CISPEP 1 HIS A 153 PRO A 154 0 1.30 CISPEP 2 SER A 253 PRO A 254 0 4.58 SITE 1 AC1 4 PRO A 133 GLU A 134 LYS A 136 CYS A 147 CRYST1 90.355 90.355 182.173 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011067 0.006390 0.000000 0.00000 SCALE2 0.000000 0.012780 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005489 0.00000