HEADER LYASE 25-SEP-09 3K0Z TITLE CRYSTAL STRUCTURE OF PUTATIVE POLYKETIDE CYCLASE (NP_977253.1) FROM TITLE 2 BACILLUS CEREUS ATCC 10987 AT 1.91 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE POLYKETIDE CYCLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PUTATIVE LIPOPROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CEREUS; SOURCE 3 ORGANISM_TAXID: 222523; SOURCE 4 STRAIN: ATCC 10987; SOURCE 5 GENE: BCE_0930; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PUTATIVE POLYKETIDE CYCLASE, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 3 LIPOPROTEIN, UNKNOWN FUNCTION, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 3K0Z 1 REMARK SEQADV REVDAT 4 17-JUL-19 3K0Z 1 REMARK LINK REVDAT 3 25-OCT-17 3K0Z 1 REMARK REVDAT 2 13-JUL-11 3K0Z 1 VERSN REVDAT 1 03-NOV-09 3K0Z 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE POLYKETIDE CYCLASE JRNL TITL 2 (NP_977253.1) FROM BACILLUS CEREUS ATCC 10987 AT 1.91 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 25167 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1269 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.91 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.96 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1551 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2342 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 319 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 17.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.27000 REMARK 3 B22 (A**2) : -0.99000 REMARK 3 B33 (A**2) : 1.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.154 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.145 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.108 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.199 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2487 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1673 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3381 ; 1.645 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4125 ; 1.038 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 310 ; 4.785 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 112 ;36.873 ;25.357 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 432 ;11.940 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ; 7.012 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 384 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2757 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 471 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 468 ; 0.202 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1717 ; 0.180 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1194 ; 0.177 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 1255 ; 0.089 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 441 ; 0.204 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.235 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 35 ; 0.196 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 29 ; 0.238 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1665 ; 2.193 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 612 ; 0.651 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2490 ; 2.812 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1027 ; 4.803 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 891 ; 6.544 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 14 A 86 4 REMARK 3 1 B 14 B 86 4 REMARK 3 2 A 101 A 117 4 REMARK 3 2 B 101 B 117 4 REMARK 3 3 A 130 A 162 4 REMARK 3 3 B 130 B 162 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1361 ; 0.480 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1361 ; 1.140 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 28 A 176 REMARK 3 ORIGIN FOR THE GROUP (A): 13.6123 65.5553 11.2669 REMARK 3 T TENSOR REMARK 3 T11: -0.0684 T22: -0.0302 REMARK 3 T33: -0.0362 T12: 0.0033 REMARK 3 T13: -0.0062 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.6661 L22: 1.2962 REMARK 3 L33: 0.7599 L12: 0.0789 REMARK 3 L13: 0.1674 L23: 0.6374 REMARK 3 S TENSOR REMARK 3 S11: 0.0172 S12: 0.0320 S13: -0.0567 REMARK 3 S21: 0.0027 S22: -0.0252 S23: 0.0631 REMARK 3 S31: 0.0254 S32: -0.0614 S33: 0.0080 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 28 B 176 REMARK 3 ORIGIN FOR THE GROUP (A): 9.6869 88.3367 13.6859 REMARK 3 T TENSOR REMARK 3 T11: -0.0403 T22: -0.0471 REMARK 3 T33: -0.0479 T12: 0.0088 REMARK 3 T13: -0.0129 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.7223 L22: 1.0511 REMARK 3 L33: 0.6633 L12: -0.1923 REMARK 3 L13: 0.3629 L23: -0.3894 REMARK 3 S TENSOR REMARK 3 S11: -0.0229 S12: 0.0085 S13: 0.0321 REMARK 3 S21: 0.0395 S22: 0.0062 S23: 0.0562 REMARK 3 S31: -0.0895 S32: -0.0053 S33: 0.0167 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1.HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2.ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY REMARK 3 3.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REMARK 3 REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4.2- REMARK 3 (N-CYCLOHEXYLAMINO)ETHANE SULFONIC ACID(CHES) BUFFER MOLECULES REMARK 3 FROM CRYSTALLIZATION ARE MODELED IN THE STRUCTURE. REMARK 4 REMARK 4 3K0Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000055408. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97932,0.97918,0.91837 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25195 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.910 REMARK 200 RESOLUTION RANGE LOW (A) : 28.843 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.45300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: DATA WERE SCALED USING XSCALE WITH FRIEDEL PAIRS KEPT AS REMARK 200 SEPARATE WHEN COMPUTING R-SYM, COMPLETENESS AND REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30.0000% PEG-3000, 0.1M CHES PH 9.5, REMARK 280 NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.91450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.51000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.70700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.51000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.91450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.70700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE REMARK 300 ASSIGNMENT OF A DIMER AS A SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 CYS A 21 REMARK 465 GLY A 22 REMARK 465 VAL A 23 REMARK 465 GLU A 24 REMARK 465 GLU A 25 REMARK 465 LYS A 26 REMARK 465 THR A 27 REMARK 465 GLU A 177 REMARK 465 GLU A 178 REMARK 465 GLY B 0 REMARK 465 CYS B 21 REMARK 465 GLY B 22 REMARK 465 VAL B 23 REMARK 465 GLU B 24 REMARK 465 GLU B 25 REMARK 465 LYS B 26 REMARK 465 THR B 27 REMARK 465 GLU B 177 REMARK 465 GLU B 178 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 28 OE1 OE2 REMARK 470 LYS A 33 CD CE NZ REMARK 470 LYS A 70 CD CE NZ REMARK 470 GLU A 80 CD OE1 OE2 REMARK 470 LYS A 89 CG CD CE NZ REMARK 470 ASP A 138 CG OD1 OD2 REMARK 470 LYS A 139 CD CE NZ REMARK 470 LYS A 140 CG CD CE NZ REMARK 470 LYS A 152 CG CD CE NZ REMARK 470 LYS A 169 CD CE NZ REMARK 470 GLU B 28 CG CD OE1 OE2 REMARK 470 LYS B 33 CE NZ REMARK 470 GLU B 34 OE1 OE2 REMARK 470 GLN B 49 OE1 NE2 REMARK 470 GLU B 80 CG CD OE1 OE2 REMARK 470 LYS B 89 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA B 176 C ALA B 176 O 0.283 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA B 176 CA - C - O ANGL. DEV. = -14.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 137 -130.18 49.02 REMARK 500 ASP A 142 105.41 -163.00 REMARK 500 ASN B 137 -110.10 57.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NHE A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NHE B 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 396159 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. THE CLONED REMARK 999 CONSTRUCT CONTAINS RESIDUES 28-179 OF THE FULL LENGTH PROTEIN. DBREF 3K0Z A 21 178 UNP Q73CY4 Q73CY4_BACC1 22 179 DBREF 3K0Z B 21 178 UNP Q73CY4 Q73CY4_BACC1 22 179 SEQADV 3K0Z GLY A 0 UNP Q73CY4 EXPRESSION TAG SEQADV 3K0Z GLY B 0 UNP Q73CY4 EXPRESSION TAG SEQRES 1 A 159 GLY CYS GLY VAL GLU GLU LYS THR GLU VAL GLN LEU LEU SEQRES 2 A 159 LYS GLU MSE PRO LYS PRO LYS ALA MSE THR ILE ASP PRO SEQRES 3 A 159 SER LEU SER GLN LYS GLU ALA THR GLU MSE VAL HIS ALA SEQRES 4 A 159 ALA GLN ARG PHE TYR ALA PHE TRP ASP THR GLY LYS GLU SEQRES 5 A 159 GLU LEU ILE PRO GLN THR VAL THR GLU ASN PHE PHE ASP SEQRES 6 A 159 HIS THR LEU PRO LYS GLY ARG PRO GLN GLY THR GLU GLY SEQRES 7 A 159 LEU LYS PHE ALA ALA GLN ASN PHE ARG LYS ILE VAL PRO SEQRES 8 A 159 ASN ILE HIS CYS GLU ILE GLU ASP LEU LEU VAL VAL GLY SEQRES 9 A 159 ASP LYS VAL THR ALA ARG LEU SER PHE THR GLY THR HIS SEQRES 10 A 159 ASN ASP LYS LYS ILE ASP PHE PHE ALA ILE ASP ILE LEU SEQRES 11 A 159 HIS VAL LYS ASP GLY LYS ILE THR GLU ASP TRP HIS LEU SEQRES 12 A 159 GLU ASP ASN LEU THR LEU LYS GLN GLN LEU GLY LEU ILE SEQRES 13 A 159 ALA GLU GLU SEQRES 1 B 159 GLY CYS GLY VAL GLU GLU LYS THR GLU VAL GLN LEU LEU SEQRES 2 B 159 LYS GLU MSE PRO LYS PRO LYS ALA MSE THR ILE ASP PRO SEQRES 3 B 159 SER LEU SER GLN LYS GLU ALA THR GLU MSE VAL HIS ALA SEQRES 4 B 159 ALA GLN ARG PHE TYR ALA PHE TRP ASP THR GLY LYS GLU SEQRES 5 B 159 GLU LEU ILE PRO GLN THR VAL THR GLU ASN PHE PHE ASP SEQRES 6 B 159 HIS THR LEU PRO LYS GLY ARG PRO GLN GLY THR GLU GLY SEQRES 7 B 159 LEU LYS PHE ALA ALA GLN ASN PHE ARG LYS ILE VAL PRO SEQRES 8 B 159 ASN ILE HIS CYS GLU ILE GLU ASP LEU LEU VAL VAL GLY SEQRES 9 B 159 ASP LYS VAL THR ALA ARG LEU SER PHE THR GLY THR HIS SEQRES 10 B 159 ASN ASP LYS LYS ILE ASP PHE PHE ALA ILE ASP ILE LEU SEQRES 11 B 159 HIS VAL LYS ASP GLY LYS ILE THR GLU ASP TRP HIS LEU SEQRES 12 B 159 GLU ASP ASN LEU THR LEU LYS GLN GLN LEU GLY LEU ILE SEQRES 13 B 159 ALA GLU GLU MODRES 3K0Z MSE A 35 MET SELENOMETHIONINE MODRES 3K0Z MSE A 41 MET SELENOMETHIONINE MODRES 3K0Z MSE A 55 MET SELENOMETHIONINE MODRES 3K0Z MSE B 35 MET SELENOMETHIONINE MODRES 3K0Z MSE B 41 MET SELENOMETHIONINE MODRES 3K0Z MSE B 55 MET SELENOMETHIONINE HET MSE A 35 8 HET MSE A 41 8 HET MSE A 55 8 HET MSE B 35 8 HET MSE B 41 8 HET MSE B 55 8 HET NHE A 1 13 HET NHE B 2 13 HETNAM MSE SELENOMETHIONINE HETNAM NHE 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID HETSYN NHE N-CYCLOHEXYLTAURINE; CHES FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 NHE 2(C8 H17 N O3 S) FORMUL 5 HOH *319(H2 O) HELIX 1 1 SER A 48 GLY A 69 1 22 HELIX 2 2 LYS A 70 GLU A 72 5 3 HELIX 3 3 LEU A 73 THR A 77 1 5 HELIX 4 4 GLY A 94 LYS A 107 1 14 HELIX 5 5 ASP A 164 LEU A 172 1 9 HELIX 6 6 SER B 48 GLY B 69 1 22 HELIX 7 7 GLU B 72 THR B 77 1 6 HELIX 8 8 GLY B 94 VAL B 109 1 16 HELIX 9 9 ASP B 164 LEU B 172 1 9 SHEET 1 A 6 MSE A 41 ILE A 43 0 SHEET 2 A 6 ILE A 112 VAL A 122 1 O VAL A 121 N THR A 42 SHEET 3 A 6 LYS A 125 HIS A 136 -1 O THR A 127 N LEU A 120 SHEET 4 A 6 LYS A 139 LYS A 152 -1 O LEU A 149 N VAL A 126 SHEET 5 A 6 LYS A 155 GLU A 163 -1 O TRP A 160 N ILE A 148 SHEET 6 A 6 VAL A 78 ASP A 84 1 N THR A 79 O ILE A 156 SHEET 1 B 6 MSE B 41 ILE B 43 0 SHEET 2 B 6 HIS B 113 VAL B 122 1 O VAL B 121 N THR B 42 SHEET 3 B 6 LYS B 125 HIS B 136 -1 O LYS B 125 N VAL B 122 SHEET 4 B 6 LYS B 139 LYS B 152 -1 O PHE B 143 N PHE B 132 SHEET 5 B 6 LYS B 155 GLU B 163 -1 O GLU B 158 N HIS B 150 SHEET 6 B 6 VAL B 78 ASP B 84 1 N THR B 79 O ILE B 156 LINK C GLU A 34 N MSE A 35 1555 1555 1.32 LINK C MSE A 35 N PRO A 36 1555 1555 1.33 LINK C ALA A 40 N MSE A 41 1555 1555 1.33 LINK C MSE A 41 N THR A 42 1555 1555 1.33 LINK C GLU A 54 N MSE A 55 1555 1555 1.32 LINK C MSE A 55 N VAL A 56 1555 1555 1.33 LINK C GLU B 34 N MSE B 35 1555 1555 1.33 LINK C MSE B 35 N PRO B 36 1555 1555 1.34 LINK C ALA B 40 N MSE B 41 1555 1555 1.32 LINK C MSE B 41 N THR B 42 1555 1555 1.33 LINK C GLU B 54 N MSE B 55 1555 1555 1.33 LINK C MSE B 55 N VAL B 56 1555 1555 1.33 SITE 1 AC1 3 ARG A 91 ALA A 101 ASN A 104 SITE 1 AC2 7 ARG B 91 PHE B 100 ALA B 101 ASN B 104 SITE 2 AC2 7 ILE B 108 ASN B 165 LYS B 169 CRYST1 37.829 77.414 109.020 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026435 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012918 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009173 0.00000