HEADER LUMINESCENT PROTEIN/IMMUNE SYSTEM 28-SEP-09 3K1K TITLE GREEN FLUORESCENT PROTEIN BOUND TO ENHANCER NANOBODY COMPND MOL_ID: 1; COMPND 2 MOLECULE: GREEN FLUORESCENT PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ENHANCER; COMPND 8 CHAIN: C, D; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEQUOREA VICTORIA; SOURCE 3 ORGANISM_TAXID: 6100; SOURCE 4 GENE: GFP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834 (ROSETTA (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRSET5D; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: CAMELUS DROMEDARIUS; SOURCE 12 ORGANISM_TAXID: 9838; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 17 EXPRESSION_SYSTEM_PLASMID: PHEN6 KEYWDS NANOBODY, ANTIBODY-COMPLEX, CHROMOPHORE, LUMINESCENCE, PHOTOPROTEIN, KEYWDS 2 LUMINESCENT PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.KIRCHHOFER,J.HELMA,K.SCHMIDTHALS,C.FRAUER,S.CUI,A.KARCHER,M.PELLIS, AUTHOR 2 S.MUYLDERMANS,C.C.DELUCCI,M.C.CARDOSO,H.LEONHARDT,K.-P.HOPFNER, AUTHOR 3 U.ROTHBAUER REVDAT 6 09-OCT-24 3K1K 1 REMARK REVDAT 5 15-NOV-23 3K1K 1 LINK ATOM REVDAT 4 10-NOV-21 3K1K 1 DBREF SEQADV LINK REVDAT 3 25-JAN-17 3K1K 1 TITLE REVDAT 2 18-SEP-13 3K1K 1 JRNL SOURCE VERSN REVDAT 1 08-DEC-09 3K1K 0 JRNL AUTH A.KIRCHHOFER,J.HELMA,K.SCHMIDTHALS,C.FRAUER,S.CUI,A.KARCHER, JRNL AUTH 2 M.PELLIS,S.MUYLDERMANS,C.C.DEULCCI,M.C.CARDOSO,H.LEONHARDT, JRNL AUTH 3 K.-P.HOPFNER,U.ROTHBAUER JRNL TITL MODULATION OF PROTEIN PROPERTIES IN LIVING CELLS USING JRNL TITL 2 NANOBODIES JRNL REF NAT.STRUCT.MOL.BIOL. V. 17 133 2010 JRNL REFN ISSN 1545-9993 JRNL PMID 20010839 JRNL DOI 10.1038/NSMB.1727 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.900 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 56271 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2860 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.0586 - 5.8334 1.00 2925 138 0.2036 0.2246 REMARK 3 2 5.8334 - 4.6315 1.00 2743 151 0.1696 0.1872 REMARK 3 3 4.6315 - 4.0465 1.00 2735 139 0.1570 0.2178 REMARK 3 4 4.0465 - 3.6767 1.00 2701 136 0.1855 0.2293 REMARK 3 5 3.6767 - 3.4132 1.00 2682 139 0.1821 0.2266 REMARK 3 6 3.4132 - 3.2120 1.00 2678 135 0.1954 0.2331 REMARK 3 7 3.2120 - 3.0512 1.00 2699 131 0.2113 0.2402 REMARK 3 8 3.0512 - 2.9184 1.00 2635 149 0.2174 0.2785 REMARK 3 9 2.9184 - 2.8061 1.00 2662 141 0.2369 0.2514 REMARK 3 10 2.8061 - 2.7093 1.00 2645 148 0.2342 0.2834 REMARK 3 11 2.7093 - 2.6246 1.00 2643 150 0.2454 0.3158 REMARK 3 12 2.6246 - 2.5495 1.00 2641 158 0.2643 0.3196 REMARK 3 13 2.5495 - 2.4824 1.00 2636 146 0.2674 0.3098 REMARK 3 14 2.4824 - 2.4219 1.00 2654 134 0.2727 0.3446 REMARK 3 15 2.4219 - 2.3668 1.00 2630 151 0.2922 0.3569 REMARK 3 16 2.3668 - 2.3165 1.00 2614 152 0.2848 0.3378 REMARK 3 17 2.3165 - 2.2701 1.00 2630 144 0.2919 0.3149 REMARK 3 18 2.2701 - 2.2273 1.00 2630 144 0.2955 0.3668 REMARK 3 19 2.2273 - 2.1875 1.00 2624 132 0.3067 0.3485 REMARK 3 20 2.1875 - 2.1504 0.98 2604 142 0.3138 0.3520 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 59.47 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.490 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.69780 REMARK 3 B22 (A**2) : 3.69780 REMARK 3 B33 (A**2) : -7.39570 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5513 REMARK 3 ANGLE : 1.140 7448 REMARK 3 CHIRALITY : 0.073 785 REMARK 3 PLANARITY : 0.006 978 REMARK 3 DIHEDRAL : 17.393 2023 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3K1K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055429. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 77.2 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56271 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 46.048 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.130 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.9500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.45400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.250 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 60% MPD, 100MM NAAC PH 4.6, 10MM REMARK 280 CACL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z+1/2 REMARK 290 4555 Y,-X,Z+1/2 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z+1/2 REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.41400 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 39.41400 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 39.41400 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 39.41400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 338 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 GLY A 2 REMARK 465 THR A 230 REMARK 465 HIS A 231 REMARK 465 GLY A 232 REMARK 465 MSE A 233 REMARK 465 ASP A 234 REMARK 465 GLU A 235 REMARK 465 LEU A 236 REMARK 465 TYR A 237 REMARK 465 LYS A 238 REMARK 465 MSE B 1 REMARK 465 GLY B 2 REMARK 465 THR B 230 REMARK 465 HIS B 231 REMARK 465 GLY B 232 REMARK 465 MSE B 233 REMARK 465 ASP B 234 REMARK 465 GLU B 235 REMARK 465 LEU B 236 REMARK 465 TYR B 237 REMARK 465 LYS B 238 REMARK 465 MET C -1 REMARK 465 ALA C 0 REMARK 465 SER C 113 REMARK 465 HIS C 114 REMARK 465 HIS C 115 REMARK 465 HIS C 116 REMARK 465 HIS C 117 REMARK 465 HIS C 118 REMARK 465 HIS C 119 REMARK 465 MET D -1 REMARK 465 ALA D 0 REMARK 465 HIS D 114 REMARK 465 HIS D 115 REMARK 465 HIS D 116 REMARK 465 HIS D 117 REMARK 465 HIS D 118 REMARK 465 HIS D 119 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 5 CD OE1 OE2 REMARK 480 GLU A 32 OE1 OE2 REMARK 480 LYS A 52 CG CD CE NZ REMARK 480 LYS A 79 CE NZ REMARK 480 ASP A 102 OD1 REMARK 480 LYS A 107 NZ REMARK 480 GLU A 124 CD OE1 OE2 REMARK 480 LYS A 126 CE NZ REMARK 480 GLU A 132 CG CD OE1 OE2 REMARK 480 ASP A 133 CG OD1 OD2 REMARK 480 LYS A 156 CG CD CE NZ REMARK 480 GLN A 157 CG CD OE1 NE2 REMARK 480 LYS A 158 CE NZ REMARK 480 LYS A 162 NZ REMARK 480 GLU A 172 CG CD OE1 OE2 REMARK 480 LYS A 214 CD CE NZ REMARK 480 LYS B 3 N C CB CG CD CE NZ REMARK 480 GLU B 5 CB CG CD OE1 OE2 REMARK 480 GLU B 6 CB CG CD OE1 OE2 REMARK 480 LEU B 15 CG CD1 CD2 REMARK 480 GLU B 32 OE1 OE2 REMARK 480 ARG B 73 CZ NH1 NH2 REMARK 480 LYS B 79 NZ REMARK 480 ARG B 80 CZ NH1 NH2 REMARK 480 GLU B 90 OE1 REMARK 480 GLU B 111 CD OE1 OE2 REMARK 480 LYS B 126 CD CE REMARK 480 ASP B 133 CG OD1 OD2 REMARK 480 GLN B 157 CD OE1 NE2 REMARK 480 LYS B 158 CE NZ REMARK 480 LYS B 162 NZ REMARK 480 LYS B 166 CE NZ REMARK 480 LYS B 214 CG CD CE NZ REMARK 480 GLN C 1 CD OE1 NE2 REMARK 480 GLN C 13 OE1 NE2 REMARK 480 ARG C 31 CZ NH1 NH2 REMARK 480 LYS C 43 CG CD CE NZ REMARK 480 GLU C 44 CD OE1 OE2 REMARK 480 ASP C 72 OD2 REMARK 480 LYS C 83 NZ REMARK 480 GLU C 85 CD OE1 OE2 REMARK 480 GLU C 101 CA REMARK 480 GLN D 1 CB CG CD OE1 NE2 REMARK 480 LEU D 11 CB CG CD1 CD2 REMARK 480 GLN D 13 CB CG CD OE1 NE2 REMARK 480 GLU D 44 CG CD OE1 OE2 REMARK 480 ARG D 75 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 103 -155.47 -156.90 REMARK 500 ALA C 88 172.24 179.38 REMARK 500 ALA D 10 -164.53 -176.62 REMARK 500 SER D 62 0.22 -68.94 REMARK 500 ALA D 88 166.58 174.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG C 35 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3G9A RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 IN THE CHAINS A AND B, THE SKIPPED RESIDUE NUMBERS 65, 67 ARE DUE REMARK 999 TO THE CHROMOPHORE. IN THE CHAINS C AND D, THERE ARE RESIDUES WITH REMARK 999 INSERTION CODES DBREF 3K1K A 1 238 UNP P42212 GFP_AEQVI 1 238 DBREF 3K1K B 1 238 UNP P42212 GFP_AEQVI 1 238 DBREF 3K1K C -1 119 PDB 3K1K 3K1K -1 119 DBREF 3K1K D -1 119 PDB 3K1K 3K1K -1 119 SEQADV 3K1K GLY A 2 UNP P42212 SER 2 ENGINEERED MUTATION SEQADV 3K1K GYS A 66 UNP P42212 SER 65 CHROMOPHORE SEQADV 3K1K GYS A 66 UNP P42212 TYR 66 CHROMOPHORE SEQADV 3K1K GYS A 66 UNP P42212 GLY 67 CHROMOPHORE SEQADV 3K1K ARG A 80 UNP P42212 GLN 80 ENGINEERED MUTATION SEQADV 3K1K SER A 99 UNP P42212 PHE 99 ENGINEERED MUTATION SEQADV 3K1K THR A 153 UNP P42212 MET 153 ENGINEERED MUTATION SEQADV 3K1K ALA A 163 UNP P42212 VAL 163 ENGINEERED MUTATION SEQADV 3K1K GLY B 2 UNP P42212 SER 2 ENGINEERED MUTATION SEQADV 3K1K GYS B 66 UNP P42212 SER 65 CHROMOPHORE SEQADV 3K1K GYS B 66 UNP P42212 TYR 66 CHROMOPHORE SEQADV 3K1K GYS B 66 UNP P42212 GLY 67 CHROMOPHORE SEQADV 3K1K ARG B 80 UNP P42212 GLN 80 ENGINEERED MUTATION SEQADV 3K1K SER B 99 UNP P42212 PHE 99 ENGINEERED MUTATION SEQADV 3K1K THR B 153 UNP P42212 MET 153 ENGINEERED MUTATION SEQADV 3K1K ALA B 163 UNP P42212 VAL 163 ENGINEERED MUTATION SEQRES 1 A 236 MSE GLY LYS GLY GLU GLU LEU PHE THR GLY VAL VAL PRO SEQRES 2 A 236 ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN GLY HIS LYS SEQRES 3 A 236 PHE SER VAL SER GLY GLU GLY GLU GLY ASP ALA THR TYR SEQRES 4 A 236 GLY LYS LEU THR LEU LYS PHE ILE CYS THR THR GLY LYS SEQRES 5 A 236 LEU PRO VAL PRO TRP PRO THR LEU VAL THR THR PHE GYS SEQRES 6 A 236 VAL GLN CYS PHE SER ARG TYR PRO ASP HIS MSE LYS ARG SEQRES 7 A 236 HIS ASP PHE PHE LYS SER ALA MSE PRO GLU GLY TYR VAL SEQRES 8 A 236 GLN GLU ARG THR ILE SER PHE LYS ASP ASP GLY ASN TYR SEQRES 9 A 236 LYS THR ARG ALA GLU VAL LYS PHE GLU GLY ASP THR LEU SEQRES 10 A 236 VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP PHE LYS GLU SEQRES 11 A 236 ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN TYR SEQRES 12 A 236 ASN SER HIS ASN VAL TYR ILE THR ALA ASP LYS GLN LYS SEQRES 13 A 236 ASN GLY ILE LYS ALA ASN PHE LYS ILE ARG HIS ASN ILE SEQRES 14 A 236 GLU ASP GLY SER VAL GLN LEU ALA ASP HIS TYR GLN GLN SEQRES 15 A 236 ASN THR PRO ILE GLY ASP GLY PRO VAL LEU LEU PRO ASP SEQRES 16 A 236 ASN HIS TYR LEU SER THR GLN SER ALA LEU SER LYS ASP SEQRES 17 A 236 PRO ASN GLU LYS ARG ASP HIS MSE VAL LEU LEU GLU PHE SEQRES 18 A 236 VAL THR ALA ALA GLY ILE THR HIS GLY MSE ASP GLU LEU SEQRES 19 A 236 TYR LYS SEQRES 1 B 236 MSE GLY LYS GLY GLU GLU LEU PHE THR GLY VAL VAL PRO SEQRES 2 B 236 ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN GLY HIS LYS SEQRES 3 B 236 PHE SER VAL SER GLY GLU GLY GLU GLY ASP ALA THR TYR SEQRES 4 B 236 GLY LYS LEU THR LEU LYS PHE ILE CYS THR THR GLY LYS SEQRES 5 B 236 LEU PRO VAL PRO TRP PRO THR LEU VAL THR THR PHE GYS SEQRES 6 B 236 VAL GLN CYS PHE SER ARG TYR PRO ASP HIS MSE LYS ARG SEQRES 7 B 236 HIS ASP PHE PHE LYS SER ALA MSE PRO GLU GLY TYR VAL SEQRES 8 B 236 GLN GLU ARG THR ILE SER PHE LYS ASP ASP GLY ASN TYR SEQRES 9 B 236 LYS THR ARG ALA GLU VAL LYS PHE GLU GLY ASP THR LEU SEQRES 10 B 236 VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP PHE LYS GLU SEQRES 11 B 236 ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN TYR SEQRES 12 B 236 ASN SER HIS ASN VAL TYR ILE THR ALA ASP LYS GLN LYS SEQRES 13 B 236 ASN GLY ILE LYS ALA ASN PHE LYS ILE ARG HIS ASN ILE SEQRES 14 B 236 GLU ASP GLY SER VAL GLN LEU ALA ASP HIS TYR GLN GLN SEQRES 15 B 236 ASN THR PRO ILE GLY ASP GLY PRO VAL LEU LEU PRO ASP SEQRES 16 B 236 ASN HIS TYR LEU SER THR GLN SER ALA LEU SER LYS ASP SEQRES 17 B 236 PRO ASN GLU LYS ARG ASP HIS MSE VAL LEU LEU GLU PHE SEQRES 18 B 236 VAL THR ALA ALA GLY ILE THR HIS GLY MSE ASP GLU LEU SEQRES 19 B 236 TYR LYS SEQRES 1 C 123 MET ALA GLN VAL GLN LEU VAL GLU SER GLY GLY ALA LEU SEQRES 2 C 123 VAL GLN PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SEQRES 3 C 123 SER GLY PHE PRO VAL ASN ARG TYR SER MET ARG TRP TYR SEQRES 4 C 123 ARG GLN ALA PRO GLY LYS GLU ARG GLU TRP VAL ALA GLY SEQRES 5 C 123 MET SER SER ALA GLY ASP ARG SER SER TYR GLU ASP SER SEQRES 6 C 123 VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASP ALA ARG SEQRES 7 C 123 ASN THR VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLU SEQRES 8 C 123 ASP THR ALA VAL TYR TYR CYS ASN VAL ASN VAL GLY PHE SEQRES 9 C 123 GLU TYR TRP GLY GLN GLY THR GLN VAL THR VAL SER SER SEQRES 10 C 123 HIS HIS HIS HIS HIS HIS SEQRES 1 D 123 MET ALA GLN VAL GLN LEU VAL GLU SER GLY GLY ALA LEU SEQRES 2 D 123 VAL GLN PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SEQRES 3 D 123 SER GLY PHE PRO VAL ASN ARG TYR SER MET ARG TRP TYR SEQRES 4 D 123 ARG GLN ALA PRO GLY LYS GLU ARG GLU TRP VAL ALA GLY SEQRES 5 D 123 MET SER SER ALA GLY ASP ARG SER SER TYR GLU ASP SER SEQRES 6 D 123 VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASP ALA ARG SEQRES 7 D 123 ASN THR VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLU SEQRES 8 D 123 ASP THR ALA VAL TYR TYR CYS ASN VAL ASN VAL GLY PHE SEQRES 9 D 123 GLU TYR TRP GLY GLN GLY THR GLN VAL THR VAL SER SER SEQRES 10 D 123 HIS HIS HIS HIS HIS HIS MODRES 3K1K GYS A 66 SER MODRES 3K1K GYS A 66 TYR MODRES 3K1K GYS A 66 GLY MODRES 3K1K MSE A 78 MET SELENOMETHIONINE MODRES 3K1K MSE A 88 MET SELENOMETHIONINE MODRES 3K1K MSE A 218 MET SELENOMETHIONINE MODRES 3K1K GYS B 66 SER MODRES 3K1K GYS B 66 TYR MODRES 3K1K GYS B 66 GLY MODRES 3K1K MSE B 78 MET SELENOMETHIONINE MODRES 3K1K MSE B 88 MET SELENOMETHIONINE MODRES 3K1K MSE B 218 MET SELENOMETHIONINE HET GYS A 66 21 HET MSE A 78 8 HET MSE A 88 8 HET MSE A 218 8 HET GYS B 66 21 HET MSE B 78 8 HET MSE B 88 8 HET MSE B 218 8 HETNAM GYS [(4Z)-2-(1-AMINO-2-HYDROXYETHYL)-4-(4- HETNAM 2 GYS HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1- HETNAM 3 GYS YL]ACETIC ACID HETNAM MSE SELENOMETHIONINE HETSYN GYS CHROMOPHORE (SER-TYR-GLY) FORMUL 1 GYS 2(C14 H15 N3 O5) FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 5 HOH *407(H2 O) HELIX 1 1 LYS A 3 THR A 9 5 7 HELIX 2 2 PRO A 56 VAL A 61 5 6 HELIX 3 3 VAL A 68 SER A 72 5 5 HELIX 4 4 PRO A 75 HIS A 81 5 7 HELIX 5 5 ASP A 82 ALA A 87 1 6 HELIX 6 6 LYS A 156 ASN A 159 5 4 HELIX 7 7 GLY B 4 THR B 9 5 6 HELIX 8 8 PRO B 56 VAL B 61 5 6 HELIX 9 9 VAL B 68 SER B 72 5 5 HELIX 10 10 PRO B 75 ASP B 82 5 8 HELIX 11 11 PHE B 84 MSE B 88 5 5 HELIX 12 12 LYS B 156 ASN B 159 5 4 HELIX 13 13 LYS C 83 THR C 87 5 5 HELIX 14 14 ASP D 61 LYS D 64 5 4 HELIX 15 15 LYS D 83 THR D 87 5 5 SHEET 1 A12 VAL A 11 VAL A 22 0 SHEET 2 A12 HIS A 25 ASP A 36 -1 O GLY A 31 N VAL A 16 SHEET 3 A12 LYS A 41 CYS A 48 -1 O LYS A 41 N ASP A 36 SHEET 4 A12 HIS A 217 ALA A 227 -1 O LEU A 220 N LEU A 44 SHEET 5 A12 HIS A 199 SER A 208 -1 N SER A 202 O THR A 225 SHEET 6 A12 HIS A 148 ASP A 155 -1 N VAL A 150 O LEU A 201 SHEET 7 A12 GLY A 160 ASN A 170 -1 O LYS A 162 N THR A 153 SHEET 8 A12 VAL A 176 PRO A 187 -1 O GLN A 177 N HIS A 169 SHEET 9 A12 TYR A 92 PHE A 100 -1 N VAL A 93 O THR A 186 SHEET 10 A12 ASN A 105 GLU A 115 -1 O TYR A 106 N ILE A 98 SHEET 11 A12 THR A 118 ILE A 128 -1 O VAL A 120 N LYS A 113 SHEET 12 A12 VAL A 11 VAL A 22 1 N ASP A 21 O GLY A 127 SHEET 1 B12 VAL B 11 VAL B 22 0 SHEET 2 B12 HIS B 25 ASP B 36 -1 O GLY B 33 N ILE B 14 SHEET 3 B12 LYS B 41 CYS B 48 -1 O ILE B 47 N SER B 30 SHEET 4 B12 HIS B 217 ALA B 227 -1 O LEU B 220 N LEU B 44 SHEET 5 B12 HIS B 199 SER B 208 -1 N SER B 202 O THR B 225 SHEET 6 B12 HIS B 148 ASP B 155 -1 N ILE B 152 O HIS B 199 SHEET 7 B12 GLY B 160 ASN B 170 -1 O GLY B 160 N ASP B 155 SHEET 8 B12 VAL B 176 PRO B 187 -1 O GLN B 177 N HIS B 169 SHEET 9 B12 TYR B 92 PHE B 100 -1 N VAL B 93 O THR B 186 SHEET 10 B12 ASN B 105 GLU B 115 -1 O TYR B 106 N ILE B 98 SHEET 11 B12 THR B 118 ILE B 128 -1 O VAL B 120 N LYS B 113 SHEET 12 B12 VAL B 11 VAL B 22 1 N GLU B 17 O ILE B 123 SHEET 1 C 4 GLN C 3 SER C 7 0 SHEET 2 C 4 LEU C 18 SER C 25 -1 O ALA C 23 N VAL C 5 SHEET 3 C 4 THR C 77 MET C 82 -1 O MET C 82 N LEU C 18 SHEET 4 C 4 PHE C 67 ASP C 72 -1 N SER C 70 O TYR C 79 SHEET 1 D 6 LEU C 11 VAL C 12 0 SHEET 2 D 6 THR C 107 VAL C 111 1 O THR C 110 N VAL C 12 SHEET 3 D 6 ALA C 88 ASN C 95 -1 N ALA C 88 O VAL C 109 SHEET 4 D 6 MET C 34 GLN C 39 -1 N TYR C 37 O TYR C 91 SHEET 5 D 6 GLU C 46 MET C 51 -1 O VAL C 48 N TRP C 36 SHEET 6 D 6 SER C 57 TYR C 59 -1 O SER C 58 N GLY C 50 SHEET 1 E 4 LEU C 11 VAL C 12 0 SHEET 2 E 4 THR C 107 VAL C 111 1 O THR C 110 N VAL C 12 SHEET 3 E 4 ALA C 88 ASN C 95 -1 N ALA C 88 O VAL C 109 SHEET 4 E 4 GLU C 101 TRP C 103 -1 O TYR C 102 N VAL C 94 SHEET 1 F 4 GLN D 3 SER D 7 0 SHEET 2 F 4 LEU D 18 SER D 25 -1 O SER D 25 N GLN D 3 SHEET 3 F 4 THR D 77 MET D 82 -1 O MET D 82 N LEU D 18 SHEET 4 F 4 PHE D 67 ASP D 72 -1 N SER D 70 O TYR D 79 SHEET 1 G 6 LEU D 11 VAL D 12 0 SHEET 2 G 6 THR D 107 VAL D 111 1 O THR D 110 N VAL D 12 SHEET 3 G 6 ALA D 88 ASN D 95 -1 N TYR D 90 O THR D 107 SHEET 4 G 6 MET D 34 GLN D 39 -1 N GLN D 39 O VAL D 89 SHEET 5 G 6 ARG D 45 MET D 51 -1 O ALA D 49 N TRP D 36 SHEET 6 G 6 SER D 57 TYR D 59 -1 O SER D 58 N GLY D 50 SHEET 1 H 4 LEU D 11 VAL D 12 0 SHEET 2 H 4 THR D 107 VAL D 111 1 O THR D 110 N VAL D 12 SHEET 3 H 4 ALA D 88 ASN D 95 -1 N TYR D 90 O THR D 107 SHEET 4 H 4 GLU D 101 TRP D 103 -1 O TYR D 102 N VAL D 94 SSBOND 1 CYS C 22 CYS C 92 1555 1555 2.05 SSBOND 2 CYS D 22 CYS D 92 1555 1555 2.03 LINK C PHE A 64 N1 GYS A 66 1555 1555 1.34 LINK C3 GYS A 66 N VAL A 68 1555 1555 1.34 LINK C HIS A 77 N MSE A 78 1555 1555 1.33 LINK C MSE A 78 N LYS A 79 1555 1555 1.34 LINK C ALA A 87 N MSE A 88 1555 1555 1.33 LINK C MSE A 88 N PRO A 89 1555 1555 1.35 LINK C HIS A 217 N MSE A 218 1555 1555 1.33 LINK C MSE A 218 N VAL A 219 1555 1555 1.33 LINK C PHE B 64 N1 GYS B 66 1555 1555 1.34 LINK C3 GYS B 66 N VAL B 68 1555 1555 1.33 LINK C HIS B 77 N MSE B 78 1555 1555 1.33 LINK C MSE B 78 N LYS B 79 1555 1555 1.33 LINK C ALA B 87 N MSE B 88 1555 1555 1.33 LINK C MSE B 88 N PRO B 89 1555 1555 1.34 LINK C HIS B 217 N MSE B 218 1555 1555 1.33 LINK C MSE B 218 N VAL B 219 1555 1555 1.33 CISPEP 1 MSE A 88 PRO A 89 0 7.69 CISPEP 2 MSE B 88 PRO B 89 0 -0.89 CRYST1 160.470 160.470 78.828 90.00 90.00 90.00 P 42 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006232 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006232 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012686 0.00000