HEADER TRANSCRIPTION 30-SEP-09 3K2J TITLE CRYSTAL STRUCTURE OF THE 3RD BROMODOMAIN OF HUMAN POLY-BROMODOMAIN TITLE 2 CONTAINING PROTEIN 1 (PB1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN POLYBROMO-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: BROMO 3 DOMAIN, UNP RESIDUES 388-494; COMPND 5 SYNONYM: PB1, HPB1, POLYBROMO-1D, BRG1-ASSOCIATED FACTOR 180, BAF180; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PB1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-R3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS PB1, POLYBROMO 1 ISOFORM 1, BAF180, POLYBROMO01D, PBRM1, BRG1- KEYWDS 2 ASSOCIATED FACTOR 180, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 3 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR P.FILIPPAKOPOULOS,S.PICAUD,T.KEATES,A.CHAIKUAD,A.C.W.PIKE,T.KROJER, AUTHOR 2 R.SETHI,F.VON DELFT,C.H.ARROWSMITH,A.EDWARDS,J.WEIGELT,C.BOUNTRA, AUTHOR 3 S.KNAPP,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 01-NOV-23 3K2J 1 REMARK SEQADV REVDAT 2 13-JUL-11 3K2J 1 VERSN REVDAT 1 13-OCT-09 3K2J 0 JRNL AUTH P.FILIPPAKOPOULOS,S.PICAUD,T.KEATES,A.CHAIKUAD,A.C.W.PIKE, JRNL AUTH 2 T.KROJER,R.SETHI,F.VON DELFT,C.H.ARROWSMITH,A.EDWARDS, JRNL AUTH 3 J.WEIGELT,C.BOUNTRA,S.KNAPP JRNL TITL CRYSTAL STRUCTURE OF THE 3RD BROMODOMAIN OF HUMAN JRNL TITL 2 POLY-BROMODOMAIN CONTAINING PROTEIN 1 (PB1) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 15238 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 744 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1069 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.2970 REMARK 3 BIN FREE R VALUE SET COUNT : 51 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1891 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 54 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 50.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.74000 REMARK 3 B22 (A**2) : 1.74000 REMARK 3 B33 (A**2) : -2.61000 REMARK 3 B12 (A**2) : 0.87000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.281 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.225 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.191 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.939 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1994 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1322 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2709 ; 1.459 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3217 ; 0.940 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 254 ; 6.042 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;43.303 ;25.400 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 331 ;17.828 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;14.163 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 293 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2275 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 383 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1260 ; 3.105 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 496 ; 2.051 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1996 ; 3.826 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 734 ; 6.027 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 711 ; 6.463 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 346 A 459 2 REMARK 3 1 B 346 B 459 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 703 ; 0.020 ; 0.050 REMARK 3 MEDIUM POSITIONAL 1 A (A): 853 ; 0.020 ; 0.500 REMARK 3 TIGHT THERMAL 1 A (A**2): 703 ; 0.100 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 853 ; 0.080 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 342 A 427 REMARK 3 ORIGIN FOR THE GROUP (A): 20.4899 -25.7546 4.2524 REMARK 3 T TENSOR REMARK 3 T11: 0.0370 T22: 0.2320 REMARK 3 T33: 0.0315 T12: -0.0582 REMARK 3 T13: 0.0161 T23: -0.0193 REMARK 3 L TENSOR REMARK 3 L11: 4.8668 L22: 6.7969 REMARK 3 L33: 5.8078 L12: -0.2792 REMARK 3 L13: 0.8589 L23: -0.6691 REMARK 3 S TENSOR REMARK 3 S11: -0.0427 S12: -0.3491 S13: 0.2275 REMARK 3 S21: 0.1438 S22: 0.1711 S23: 0.3110 REMARK 3 S31: -0.1657 S32: -0.4301 S33: -0.1284 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 428 A 462 REMARK 3 ORIGIN FOR THE GROUP (A): 30.7770 -27.4642 -0.0053 REMARK 3 T TENSOR REMARK 3 T11: 0.1070 T22: 0.0931 REMARK 3 T33: 0.0839 T12: -0.0351 REMARK 3 T13: 0.0210 T23: -0.0283 REMARK 3 L TENSOR REMARK 3 L11: 2.2701 L22: 9.1508 REMARK 3 L33: 3.6913 L12: 1.0459 REMARK 3 L13: 0.5604 L23: -3.5915 REMARK 3 S TENSOR REMARK 3 S11: -0.2168 S12: 0.0277 S13: -0.1467 REMARK 3 S21: 0.1595 S22: 0.0536 S23: -0.6761 REMARK 3 S31: 0.0876 S32: -0.0033 S33: 0.1632 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 342 B 427 REMARK 3 ORIGIN FOR THE GROUP (A): 11.9032 -30.5851 -15.6784 REMARK 3 T TENSOR REMARK 3 T11: 0.1352 T22: 0.1324 REMARK 3 T33: 0.0362 T12: -0.1120 REMARK 3 T13: -0.0109 T23: 0.0234 REMARK 3 L TENSOR REMARK 3 L11: 6.3824 L22: 5.2425 REMARK 3 L33: 5.5419 L12: -1.2608 REMARK 3 L13: -0.3696 L23: 0.8450 REMARK 3 S TENSOR REMARK 3 S11: 0.0274 S12: 0.0595 S13: 0.4007 REMARK 3 S21: -0.3324 S22: 0.1138 S23: 0.0846 REMARK 3 S31: -0.4572 S32: 0.0227 S33: -0.1412 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 428 B 462 REMARK 3 ORIGIN FOR THE GROUP (A): 8.0124 -40.1217 -11.1754 REMARK 3 T TENSOR REMARK 3 T11: 0.0737 T22: 0.1216 REMARK 3 T33: 0.0599 T12: -0.0255 REMARK 3 T13: -0.0043 T23: 0.0351 REMARK 3 L TENSOR REMARK 3 L11: 9.5354 L22: 3.2690 REMARK 3 L33: 4.2897 L12: -2.8903 REMARK 3 L13: -3.8855 L23: 2.5286 REMARK 3 S TENSOR REMARK 3 S11: -0.0952 S12: -0.1317 S13: -0.6039 REMARK 3 S21: -0.0823 S22: -0.1156 S23: 0.2172 REMARK 3 S31: 0.0979 S32: 0.1624 S33: 0.2107 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 3K2J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055464. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15266 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 36.221 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : 0.07400 REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.74400 REMARK 200 R SYM FOR SHELL (I) : 0.74400 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: ENSEMBLE OF 2NXB, 2OO1, 2OSS, 2OUO, 2RFJ, 3DAI, REMARK 200 3D7C, 3DWY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NAOAC.3H20 PH 5.5, 1.1M REMARK 280 (NH4)2SO4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.98333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.49167 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 39.73750 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 13.24583 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 66.22917 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE PROTEIN IS MONOMERIC BY GEL FILTRATION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 333 REMARK 465 HIS A 334 REMARK 465 HIS A 335 REMARK 465 HIS A 336 REMARK 465 HIS A 337 REMARK 465 HIS A 338 REMARK 465 HIS A 339 REMARK 465 SER A 340 REMARK 465 SER A 341 REMARK 465 MET B 333 REMARK 465 HIS B 334 REMARK 465 HIS B 335 REMARK 465 HIS B 336 REMARK 465 HIS B 337 REMARK 465 HIS B 338 REMARK 465 HIS B 339 REMARK 465 SER B 340 REMARK 465 SER B 341 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 343 CG1 CG2 REMARK 470 ASP A 344 CG OD1 OD2 REMARK 470 LEU A 345 CG CD1 CD2 REMARK 470 THR A 347 OG1 CG2 REMARK 470 LEU A 350 CG CD1 CD2 REMARK 470 ASN A 367 CG OD1 ND2 REMARK 470 GLN A 370 CG CD OE1 NE2 REMARK 470 ILE A 372 CG1 CG2 CD1 REMARK 470 SER A 381 OG REMARK 470 LYS A 382 CG CD CE NZ REMARK 470 LYS A 383 CG CD CE NZ REMARK 470 LYS A 384 CG CD CE NZ REMARK 470 LYS A 393 CD CE NZ REMARK 470 ARG A 429 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 443 CE NZ REMARK 470 LYS A 453 CD CE NZ REMARK 470 ARG A 457 NE CZ NH1 NH2 REMARK 470 ARG A 458 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 461 CG1 CG2 CD1 REMARK 470 VAL B 343 CG1 CG2 REMARK 470 THR B 347 OG1 CG2 REMARK 470 LEU B 350 CG CD1 CD2 REMARK 470 TYR B 351 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE B 352 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN B 367 CG OD1 ND2 REMARK 470 GLN B 370 CG CD OE1 NE2 REMARK 470 ILE B 372 CG1 CG2 CD1 REMARK 470 SER B 381 OG REMARK 470 LYS B 382 CG CD CE NZ REMARK 470 LYS B 383 CG CD CE NZ REMARK 470 LYS B 384 CG CD CE NZ REMARK 470 LYS B 393 CD CE NZ REMARK 470 ARG B 429 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 443 CE NZ REMARK 470 LYS B 453 CD CE NZ REMARK 470 ARG B 457 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 458 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 461 CG1 CG2 CD1 REMARK 470 GLU B 462 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 362 O1 SO4 B 2 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 383 -117.05 111.55 REMARK 500 LYS B 383 -116.78 111.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2 DBREF 3K2J A 356 462 UNP Q86U86 PB1_HUMAN 388 494 DBREF 3K2J B 356 462 UNP Q86U86 PB1_HUMAN 388 494 SEQADV 3K2J MET A 333 UNP Q86U86 EXPRESSION TAG SEQADV 3K2J HIS A 334 UNP Q86U86 EXPRESSION TAG SEQADV 3K2J HIS A 335 UNP Q86U86 EXPRESSION TAG SEQADV 3K2J HIS A 336 UNP Q86U86 EXPRESSION TAG SEQADV 3K2J HIS A 337 UNP Q86U86 EXPRESSION TAG SEQADV 3K2J HIS A 338 UNP Q86U86 EXPRESSION TAG SEQADV 3K2J HIS A 339 UNP Q86U86 EXPRESSION TAG SEQADV 3K2J SER A 340 UNP Q86U86 EXPRESSION TAG SEQADV 3K2J SER A 341 UNP Q86U86 EXPRESSION TAG SEQADV 3K2J GLY A 342 UNP Q86U86 EXPRESSION TAG SEQADV 3K2J VAL A 343 UNP Q86U86 EXPRESSION TAG SEQADV 3K2J ASP A 344 UNP Q86U86 EXPRESSION TAG SEQADV 3K2J LEU A 345 UNP Q86U86 EXPRESSION TAG SEQADV 3K2J GLY A 346 UNP Q86U86 EXPRESSION TAG SEQADV 3K2J THR A 347 UNP Q86U86 EXPRESSION TAG SEQADV 3K2J GLU A 348 UNP Q86U86 EXPRESSION TAG SEQADV 3K2J ASN A 349 UNP Q86U86 EXPRESSION TAG SEQADV 3K2J LEU A 350 UNP Q86U86 EXPRESSION TAG SEQADV 3K2J TYR A 351 UNP Q86U86 EXPRESSION TAG SEQADV 3K2J PHE A 352 UNP Q86U86 EXPRESSION TAG SEQADV 3K2J GLN A 353 UNP Q86U86 EXPRESSION TAG SEQADV 3K2J SER A 354 UNP Q86U86 EXPRESSION TAG SEQADV 3K2J MET A 355 UNP Q86U86 EXPRESSION TAG SEQADV 3K2J MET B 333 UNP Q86U86 EXPRESSION TAG SEQADV 3K2J HIS B 334 UNP Q86U86 EXPRESSION TAG SEQADV 3K2J HIS B 335 UNP Q86U86 EXPRESSION TAG SEQADV 3K2J HIS B 336 UNP Q86U86 EXPRESSION TAG SEQADV 3K2J HIS B 337 UNP Q86U86 EXPRESSION TAG SEQADV 3K2J HIS B 338 UNP Q86U86 EXPRESSION TAG SEQADV 3K2J HIS B 339 UNP Q86U86 EXPRESSION TAG SEQADV 3K2J SER B 340 UNP Q86U86 EXPRESSION TAG SEQADV 3K2J SER B 341 UNP Q86U86 EXPRESSION TAG SEQADV 3K2J GLY B 342 UNP Q86U86 EXPRESSION TAG SEQADV 3K2J VAL B 343 UNP Q86U86 EXPRESSION TAG SEQADV 3K2J ASP B 344 UNP Q86U86 EXPRESSION TAG SEQADV 3K2J LEU B 345 UNP Q86U86 EXPRESSION TAG SEQADV 3K2J GLY B 346 UNP Q86U86 EXPRESSION TAG SEQADV 3K2J THR B 347 UNP Q86U86 EXPRESSION TAG SEQADV 3K2J GLU B 348 UNP Q86U86 EXPRESSION TAG SEQADV 3K2J ASN B 349 UNP Q86U86 EXPRESSION TAG SEQADV 3K2J LEU B 350 UNP Q86U86 EXPRESSION TAG SEQADV 3K2J TYR B 351 UNP Q86U86 EXPRESSION TAG SEQADV 3K2J PHE B 352 UNP Q86U86 EXPRESSION TAG SEQADV 3K2J GLN B 353 UNP Q86U86 EXPRESSION TAG SEQADV 3K2J SER B 354 UNP Q86U86 EXPRESSION TAG SEQADV 3K2J MET B 355 UNP Q86U86 EXPRESSION TAG SEQRES 1 A 130 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 130 GLY THR GLU ASN LEU TYR PHE GLN SER MET GLN LEU TYR SEQRES 3 A 130 ASP THR VAL ARG SER CYS ARG ASN ASN GLN GLY GLN LEU SEQRES 4 A 130 ILE ALA GLU PRO PHE TYR HIS LEU PRO SER LYS LYS LYS SEQRES 5 A 130 TYR PRO ASP TYR TYR GLN GLN ILE LYS MET PRO ILE SER SEQRES 6 A 130 LEU GLN GLN ILE ARG THR LYS LEU LYS ASN GLN GLU TYR SEQRES 7 A 130 GLU THR LEU ASP HIS LEU GLU CYS ASP LEU ASN LEU MET SEQRES 8 A 130 PHE GLU ASN ALA LYS ARG TYR ASN VAL PRO ASN SER ALA SEQRES 9 A 130 ILE TYR LYS ARG VAL LEU LYS LEU GLN GLN VAL MET GLN SEQRES 10 A 130 ALA LYS LYS LYS GLU LEU ALA ARG ARG ASP ASP ILE GLU SEQRES 1 B 130 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 130 GLY THR GLU ASN LEU TYR PHE GLN SER MET GLN LEU TYR SEQRES 3 B 130 ASP THR VAL ARG SER CYS ARG ASN ASN GLN GLY GLN LEU SEQRES 4 B 130 ILE ALA GLU PRO PHE TYR HIS LEU PRO SER LYS LYS LYS SEQRES 5 B 130 TYR PRO ASP TYR TYR GLN GLN ILE LYS MET PRO ILE SER SEQRES 6 B 130 LEU GLN GLN ILE ARG THR LYS LEU LYS ASN GLN GLU TYR SEQRES 7 B 130 GLU THR LEU ASP HIS LEU GLU CYS ASP LEU ASN LEU MET SEQRES 8 B 130 PHE GLU ASN ALA LYS ARG TYR ASN VAL PRO ASN SER ALA SEQRES 9 B 130 ILE TYR LYS ARG VAL LEU LYS LEU GLN GLN VAL MET GLN SEQRES 10 B 130 ALA LYS LYS LYS GLU LEU ALA ARG ARG ASP ASP ILE GLU HET CL A 1 1 HET CL A 2 1 HET SO4 B 1 5 HET SO4 B 2 5 HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION FORMUL 3 CL 2(CL 1-) FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 HOH *54(H2 O) HELIX 1 1 LEU A 345 SER A 363 1 19 HELIX 2 2 ALA A 373 TYR A 377 5 5 HELIX 3 3 TYR A 385 ILE A 392 1 8 HELIX 4 4 SER A 397 ASN A 407 1 11 HELIX 5 5 THR A 412 ASN A 431 1 20 HELIX 6 6 SER A 435 ASP A 459 1 25 HELIX 7 7 LEU B 345 SER B 363 1 19 HELIX 8 8 ALA B 373 TYR B 377 5 5 HELIX 9 9 TYR B 385 ILE B 392 1 8 HELIX 10 10 SER B 397 ASN B 407 1 11 HELIX 11 11 THR B 412 ASN B 431 1 20 HELIX 12 12 SER B 435 ASP B 459 1 25 SSBOND 1 CYS A 418 CYS B 418 1555 1555 2.00 CISPEP 1 LYS A 382 LYS A 383 0 4.73 CISPEP 2 LYS A 382 LYS A 383 0 16.80 CISPEP 3 LYS B 382 LYS B 383 0 4.98 CISPEP 4 LYS B 382 LYS B 383 0 17.33 SITE 1 AC1 1 GLY A 346 SITE 1 AC2 1 GLY B 346 SITE 1 AC3 3 ARG A 362 THR B 360 LYS B 451 SITE 1 AC4 3 THR A 360 LYS A 451 ARG B 362 CRYST1 81.390 81.390 79.475 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012287 0.007094 0.000000 0.00000 SCALE2 0.000000 0.014187 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012583 0.00000