HEADER ISOMERASE 30-SEP-09 3K2V TITLE STRUCTURE OF THE CBS PAIR OF A PUTATIVE D-ARABINOSE 5-PHOSPHATE TITLE 2 ISOMERASE FROM KLEBSIELLA PNEUMONIAE SUBSP. PNEUMONIAE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE D-ARABINOSE 5-PHOSPHATE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: TARGETED DOMAIN 186-331; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE SUBSP. PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 272620; SOURCE 4 STRAIN: MGH 78578; SOURCE 5 GENE: KPN78578_35760, KPN_03607, YRBH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: MODIFIED BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG19 KEYWDS KPSF-LIKE PROTEIN, CBS DOMAIN, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 3 ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.E.CUFF,L.VOLKART,J.BEARDEN,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 5 20-NOV-24 3K2V 1 REMARK LINK REVDAT 4 01-NOV-17 3K2V 1 REMARK REVDAT 3 13-JUL-11 3K2V 1 VERSN REVDAT 2 26-MAY-10 3K2V 1 REMARK REVDAT 1 22-DEC-09 3K2V 0 JRNL AUTH M.E.CUFF,L.VOLKART,J.BEARDEN,A.JOACHIMIAK JRNL TITL STRUCTURE OF THE CBS PAIR OF A PUTATIVE D-ARABINOSE JRNL TITL 2 5-PHOSPHATE ISOMERASE FROM KLEBSIELLA PNEUMONIAE SUBSP. JRNL TITL 3 PNEUMONIAE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 31749 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1604 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2177 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE SET COUNT : 134 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1969 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 95 REMARK 3 SOLVENT ATOMS : 289 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.48000 REMARK 3 B22 (A**2) : 0.48000 REMARK 3 B33 (A**2) : -0.72000 REMARK 3 B12 (A**2) : 0.24000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.108 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.104 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.063 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.702 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2225 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1474 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3041 ; 1.532 ; 2.027 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3566 ; 0.941 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 295 ; 5.623 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 92 ;30.161 ;22.826 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 404 ;13.565 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;17.492 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 376 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2450 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 427 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1354 ; 0.791 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 564 ; 0.198 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2206 ; 1.557 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 871 ; 2.669 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 824 ; 4.194 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -3 A 146 REMARK 3 ORIGIN FOR THE GROUP (A): -11.7055 19.2899 91.3916 REMARK 3 T TENSOR REMARK 3 T11: 0.1231 T22: 0.0670 REMARK 3 T33: 0.0311 T12: 0.0089 REMARK 3 T13: 0.0004 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 0.9838 L22: 0.3091 REMARK 3 L33: 3.7692 L12: 0.2274 REMARK 3 L13: -0.6476 L23: 0.3525 REMARK 3 S TENSOR REMARK 3 S11: -0.0640 S12: -0.1133 S13: -0.0024 REMARK 3 S21: 0.0394 S22: -0.1282 S23: -0.0178 REMARK 3 S31: 0.1484 S32: -0.0418 S33: 0.1922 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 146 REMARK 3 ORIGIN FOR THE GROUP (A): -20.4264 7.2301 74.9709 REMARK 3 T TENSOR REMARK 3 T11: 0.0604 T22: 0.0554 REMARK 3 T33: 0.1729 T12: 0.0247 REMARK 3 T13: -0.0233 T23: -0.0300 REMARK 3 L TENSOR REMARK 3 L11: 1.7844 L22: 1.7271 REMARK 3 L33: 0.8076 L12: 1.6181 REMARK 3 L13: -0.0381 L23: -0.2548 REMARK 3 S TENSOR REMARK 3 S11: 0.1082 S12: -0.0678 S13: 0.3018 REMARK 3 S21: -0.0026 S22: -0.0976 S23: 0.3043 REMARK 3 S31: 0.0064 S32: -0.0684 S33: -0.0106 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3K2V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055476. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931, 0.97945 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31947 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.20 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.40 REMARK 200 R MERGE FOR SHELL (I) : 0.67600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MLPHARE, DM 6.0, HKL-3000, SHELXD, SOLVE, RESOLVE, REMARK 200 CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH8.5, 0.2M AMMONIUM REMARK 280 SULFATE, 25% PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 51.07550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 29.48845 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 71.61667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 51.07550 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 29.48845 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 71.61667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 51.07550 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 29.48845 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 71.61667 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 51.07550 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 29.48845 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 71.61667 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 51.07550 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 29.48845 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 71.61667 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 51.07550 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 29.48845 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 71.61667 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 58.97691 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 143.23333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 58.97691 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 143.23333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 58.97691 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 143.23333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 58.97691 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 143.23333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 58.97691 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 143.23333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 58.97691 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 143.23333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: LIKELY THE AB DIMER IN THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 183 REMARK 465 ASN A 184 REMARK 465 ALA A 185 REMARK 465 GLU A 186 REMARK 465 ALA A 187 REMARK 465 ARG A 188 REMARK 465 GLY A 189 REMARK 465 PHE A 190 REMARK 465 THR A 191 REMARK 465 ALA A 192 REMARK 465 GLU A 193 REMARK 465 ASP A 194 REMARK 465 PHE A 195 REMARK 465 ALA A 196 REMARK 465 LEU A 197 REMARK 465 SER A 198 REMARK 465 HIS A 199 REMARK 465 PRO A 200 REMARK 465 GLY A 201 REMARK 465 SER B 183 REMARK 465 ASN B 184 REMARK 465 ALA B 185 REMARK 465 GLU B 186 REMARK 465 ALA B 187 REMARK 465 ARG B 188 REMARK 465 GLY B 189 REMARK 465 PHE B 190 REMARK 465 THR B 191 REMARK 465 ALA B 192 REMARK 465 GLU B 193 REMARK 465 ASP B 194 REMARK 465 PHE B 195 REMARK 465 ALA B 196 REMARK 465 LEU B 197 REMARK 465 SER B 198 REMARK 465 HIS B 199 REMARK 465 PRO B 200 REMARK 465 GLY B 201 REMARK 465 GLY B 202 REMARK 465 ALA B 331 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 371 O HOH A 392 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 274 CB - CG - SE ANGL. DEV. = -21.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 269 43.94 -76.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CMK A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CMK B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 332 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 332 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 333 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 334 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC63101.2 RELATED DB: TARGETDB DBREF 3K2V A 186 331 UNP A6TEL6 A6TEL6_KLEP7 186 331 DBREF 3K2V B 186 331 UNP A6TEL6 A6TEL6_KLEP7 186 331 SEQADV 3K2V SER A 183 UNP A6TEL6 EXPRESSION TAG SEQADV 3K2V ASN A 184 UNP A6TEL6 EXPRESSION TAG SEQADV 3K2V ALA A 185 UNP A6TEL6 EXPRESSION TAG SEQADV 3K2V SER B 183 UNP A6TEL6 EXPRESSION TAG SEQADV 3K2V ASN B 184 UNP A6TEL6 EXPRESSION TAG SEQADV 3K2V ALA B 185 UNP A6TEL6 EXPRESSION TAG SEQRES 1 A 149 SER ASN ALA GLU ALA ARG GLY PHE THR ALA GLU ASP PHE SEQRES 2 A 149 ALA LEU SER HIS PRO GLY GLY ALA LEU GLY ARG LYS LEU SEQRES 3 A 149 LEU LEU ARG VAL ASN ASP ILE MSE HIS THR GLY ASP GLU SEQRES 4 A 149 ILE PRO HIS VAL GLY LEU GLN ALA THR LEU ARG ASP ALA SEQRES 5 A 149 LEU LEU GLU ILE THR ARG LYS ASN LEU GLY MSE THR ALA SEQRES 6 A 149 ILE CYS ASP ASP ASP MSE ASN ILE ILE GLY ILE PHE THR SEQRES 7 A 149 ASP GLY ASP LEU ARG ARG VAL PHE ASP THR GLY VAL ASP SEQRES 8 A 149 MSE ARG ASP ALA SER ILE ALA ASP VAL MSE THR ARG GLY SEQRES 9 A 149 GLY ILE ARG ILE ARG PRO GLY THR LEU ALA VAL ASP ALA SEQRES 10 A 149 LEU ASN LEU MSE GLN SER ARG HIS ILE THR CYS VAL LEU SEQRES 11 A 149 VAL ALA ASP GLY ASP HIS LEU LEU GLY VAL VAL HIS MSE SEQRES 12 A 149 HIS ASP LEU LEU ARG ALA SEQRES 1 B 149 SER ASN ALA GLU ALA ARG GLY PHE THR ALA GLU ASP PHE SEQRES 2 B 149 ALA LEU SER HIS PRO GLY GLY ALA LEU GLY ARG LYS LEU SEQRES 3 B 149 LEU LEU ARG VAL ASN ASP ILE MSE HIS THR GLY ASP GLU SEQRES 4 B 149 ILE PRO HIS VAL GLY LEU GLN ALA THR LEU ARG ASP ALA SEQRES 5 B 149 LEU LEU GLU ILE THR ARG LYS ASN LEU GLY MSE THR ALA SEQRES 6 B 149 ILE CYS ASP ASP ASP MSE ASN ILE ILE GLY ILE PHE THR SEQRES 7 B 149 ASP GLY ASP LEU ARG ARG VAL PHE ASP THR GLY VAL ASP SEQRES 8 B 149 MSE ARG ASP ALA SER ILE ALA ASP VAL MSE THR ARG GLY SEQRES 9 B 149 GLY ILE ARG ILE ARG PRO GLY THR LEU ALA VAL ASP ALA SEQRES 10 B 149 LEU ASN LEU MSE GLN SER ARG HIS ILE THR CYS VAL LEU SEQRES 11 B 149 VAL ALA ASP GLY ASP HIS LEU LEU GLY VAL VAL HIS MSE SEQRES 12 B 149 HIS ASP LEU LEU ARG ALA MODRES 3K2V MSE A 216 MET SELENOMETHIONINE MODRES 3K2V MSE A 245 MET SELENOMETHIONINE MODRES 3K2V MSE A 253 MET SELENOMETHIONINE MODRES 3K2V MSE A 274 MET SELENOMETHIONINE MODRES 3K2V MSE A 283 MET SELENOMETHIONINE MODRES 3K2V MSE A 303 MET SELENOMETHIONINE MODRES 3K2V MSE A 325 MET SELENOMETHIONINE MODRES 3K2V MSE B 216 MET SELENOMETHIONINE MODRES 3K2V MSE B 245 MET SELENOMETHIONINE MODRES 3K2V MSE B 253 MET SELENOMETHIONINE MODRES 3K2V MSE B 274 MET SELENOMETHIONINE MODRES 3K2V MSE B 283 MET SELENOMETHIONINE MODRES 3K2V MSE B 303 MET SELENOMETHIONINE MODRES 3K2V MSE B 325 MET SELENOMETHIONINE HET MSE A 216 8 HET MSE A 245 13 HET MSE A 253 8 HET MSE A 274 13 HET MSE A 283 8 HET MSE A 303 8 HET MSE A 325 13 HET MSE B 216 8 HET MSE B 245 13 HET MSE B 253 8 HET MSE B 274 8 HET MSE B 283 8 HET MSE B 303 13 HET MSE B 325 16 HET CMK A 1 36 HET SO4 A 332 5 HET GOL A 333 6 HET GOL A 334 6 HET CMK B 1 36 HET GOL B 332 6 HETNAM MSE SELENOMETHIONINE HETNAM CMK CYTIDINE 5'-MONOPHOSPHATE 3-DEOXY-BETA-D-GULO-OCT-2- HETNAM 2 CMK ULO-PYRANOSONIC ACID HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN CMK CMP-2-KETO-3-DEOXY-OCTULOSONIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 3 CMK 2(C17 H26 N3 O15 P) FORMUL 4 SO4 O4 S 2- FORMUL 5 GOL 3(C3 H8 O3) FORMUL 9 HOH *289(H2 O) HELIX 1 1 GLY A 202 LEU A 208 1 7 HELIX 2 2 LEU A 209 LEU A 210 5 2 HELIX 3 3 ARG A 211 ILE A 215 5 5 HELIX 4 4 THR A 218 ILE A 222 5 5 HELIX 5 5 THR A 230 ASN A 242 1 13 HELIX 6 6 ASP A 261 ASP A 269 1 9 HELIX 7 7 SER A 278 MSE A 283 1 6 HELIX 8 8 LEU A 295 HIS A 307 1 13 HELIX 9 9 MSE A 325 LEU A 329 1 5 HELIX 10 10 ALA B 203 LEU B 209 1 7 HELIX 11 11 LEU B 210 ILE B 215 5 6 HELIX 12 12 THR B 218 ILE B 222 5 5 HELIX 13 13 THR B 230 ASN B 242 1 13 HELIX 14 14 ASP B 261 ASP B 269 1 9 HELIX 15 15 SER B 278 MSE B 283 1 6 HELIX 16 16 LEU B 295 HIS B 307 1 13 HELIX 17 17 MSE B 325 LEU B 329 1 5 SHEET 1 A 4 HIS A 224 VAL A 225 0 SHEET 2 A 4 MSE A 245 CYS A 249 1 O CYS A 249 N VAL A 225 SHEET 3 A 4 ILE A 255 THR A 260 -1 O ILE A 256 N ILE A 248 SHEET 4 A 4 THR A 284 ARG A 285 -1 O THR A 284 N ILE A 258 SHEET 1 B 3 ARG A 289 ILE A 290 0 SHEET 2 B 3 CYS A 310 ASP A 315 1 O ALA A 314 N ILE A 290 SHEET 3 B 3 HIS A 318 HIS A 324 -1 O GLY A 321 N VAL A 313 SHEET 1 C 4 HIS B 224 GLY B 226 0 SHEET 2 C 4 MSE B 245 CYS B 249 1 O CYS B 249 N VAL B 225 SHEET 3 C 4 ILE B 255 THR B 260 -1 O ILE B 256 N ILE B 248 SHEET 4 C 4 THR B 284 ARG B 285 -1 O THR B 284 N ILE B 258 SHEET 1 D 3 ARG B 289 ILE B 290 0 SHEET 2 D 3 CYS B 310 ASP B 315 1 O ALA B 314 N ILE B 290 SHEET 3 D 3 HIS B 318 HIS B 324 -1 O GLY B 321 N VAL B 313 LINK C ILE A 215 N MSE A 216 1555 1555 1.33 LINK C MSE A 216 N HIS A 217 1555 1555 1.33 LINK C GLY A 244 N MSE A 245 1555 1555 1.32 LINK C MSE A 245 N THR A 246 1555 1555 1.32 LINK C ASP A 252 N MSE A 253 1555 1555 1.34 LINK C MSE A 253 N ASN A 254 1555 1555 1.33 LINK C ASP A 273 N MSE A 274 1555 1555 1.32 LINK C MSE A 274 N ARG A 275 1555 1555 1.33 LINK C VAL A 282 N MSE A 283 1555 1555 1.33 LINK C MSE A 283 N THR A 284 1555 1555 1.33 LINK C LEU A 302 N MSE A 303 1555 1555 1.33 LINK C MSE A 303 N GLN A 304 1555 1555 1.33 LINK C HIS A 324 N MSE A 325 1555 1555 1.33 LINK C MSE A 325 N HIS A 326 1555 1555 1.34 LINK C ILE B 215 N MSE B 216 1555 1555 1.33 LINK C MSE B 216 N HIS B 217 1555 1555 1.32 LINK C GLY B 244 N MSE B 245 1555 1555 1.33 LINK C MSE B 245 N THR B 246 1555 1555 1.32 LINK C ASP B 252 N MSE B 253 1555 1555 1.33 LINK C MSE B 253 N ASN B 254 1555 1555 1.33 LINK C ASP B 273 N MSE B 274 1555 1555 1.34 LINK C MSE B 274 N ARG B 275 1555 1555 1.33 LINK C VAL B 282 N MSE B 283 1555 1555 1.33 LINK C MSE B 283 N THR B 284 1555 1555 1.32 LINK C LEU B 302 N MSE B 303 1555 1555 1.33 LINK C MSE B 303 N GLN B 304 1555 1555 1.33 LINK C HIS B 324 N AMSE B 325 1555 1555 1.33 LINK C HIS B 324 N BMSE B 325 1555 1555 1.32 LINK C AMSE B 325 N HIS B 326 1555 1555 1.33 LINK C BMSE B 325 N HIS B 326 1555 1555 1.34 SITE 1 AC1 27 HOH A 60 HOH A 61 HOH A 63 HOH A 90 SITE 2 AC1 27 HOH A 129 HOH A 161 ILE A 258 THR A 260 SITE 3 AC1 27 GLY A 262 ASP A 263 ARG A 265 ARG A 266 SITE 4 AC1 27 THR A 284 ILE A 288 HIS A 307 ILE A 308 SITE 5 AC1 27 CYS A 310 VAL A 311 HOH A 360 HOH A 361 SITE 6 AC1 27 HOH A 373 ASN B 242 LEU B 243 GLY B 244 SITE 7 AC1 27 ASP B 261 HIS B 324 GOL B 332 SITE 1 AC2 27 HOH A 131 ASN A 242 GLY A 244 ASP A 261 SITE 2 AC2 27 HIS A 324 HIS A 326 GOL A 333 HOH B 3 SITE 3 AC2 27 HOH B 114 ILE B 258 THR B 260 GLY B 262 SITE 4 AC2 27 ASP B 263 ARG B 265 ARG B 266 THR B 284 SITE 5 AC2 27 GLY B 287 ILE B 288 HIS B 307 ILE B 308 SITE 6 AC2 27 CYS B 310 VAL B 311 HOH B 346 HOH B 366 SITE 7 AC2 27 HOH B 374 HOH B 375 HOH B 381 SITE 1 AC3 4 HOH A 103 ARG A 291 GLY A 316 ASP A 317 SITE 1 AC4 6 CMK A 1 HIS A 307 HOH B 141 HOH B 179 SITE 2 AC4 6 HIS B 217 ASN B 242 SITE 1 AC5 5 ASN A 242 LEU A 243 ASP A 327 ARG A 330 SITE 2 AC5 5 CMK B 1 SITE 1 AC6 4 ASN A 301 HOH A 382 HOH A 386 HOH A 391 CRYST1 102.151 102.151 214.850 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009789 0.005652 0.000000 0.00000 SCALE2 0.000000 0.011304 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004654 0.00000