HEADER LYASE/LYASE INHIBITOR 01-OCT-09 3K34 TITLE HUMAN CARBONIC ANHYDRASE II WITH A SULFONAMIDE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBONIC ANHYDRASE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CARBONIC ANHYDRASE II, CA-II, CARBONATE DEHYDRATASE II, COMPND 5 CARBONIC ANHYDRASE C, CAC; COMPND 6 EC: 4.2.1.1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 OTHER_DETAILS: THE PROTEIN WAS PURCHASED FROM SIGMA KEYWDS CARBONIC ANHYDRASE, ATOMIC RESOLUTION, SULFONAMIDE INHIBITOR, DISEASE KEYWDS 2 MUTATION, LYASE, METAL-BINDING, LYASE-LYASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.A.BEHNKE,I.LE TRONG,E.A.MERRITT,D.C.TELLER,R.E.STENKAMP REVDAT 3 06-SEP-23 3K34 1 REMARK LINK REVDAT 2 21-MAR-12 3K34 1 JRNL VERSN HEADER REVDAT 1 12-MAY-10 3K34 0 JRNL AUTH C.A.BEHNKE,I.LE TRONG,J.W.GODDEN,E.A.MERRITT,D.C.TELLER, JRNL AUTH 2 J.BAJORATH,R.E.STENKAMP JRNL TITL ATOMIC RESOLUTION STUDIES OF CARBONIC ANHYDRASE II. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 66 616 2010 JRNL REFN ISSN 0907-4449 JRNL PMID 20445237 JRNL DOI 10.1107/S0907444910006554 REMARK 2 REMARK 2 RESOLUTION. 0.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.141 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : 0.160 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 8614 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 172451 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2059 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 249 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : NULL REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : NULL REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : NULL REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : NULL REMARK 3 NUMBER OF RESTRAINTS : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.033 REMARK 3 ANGLE DISTANCES (A) : 0.052 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : NULL REMARK 3 ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : NULL REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : NULL REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ELECTRON DENSITY WAS OBSERVED FOR ONLY REMARK 3 THE HG AND C1 ATOMS OF A SECOND CONFORMER OF THE HGB LIGAND. REMARK 3 PRESUMABLY THE LIGAND IS SUFFICIENTLY DISORDERED BEYOND C1 TO REMARK 3 RENDER IT UNOBSERVED REMARK 4 REMARK 4 3K34 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055485. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.78 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 172463 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 0.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 2CBA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3M AMMONIUM SULFATE, 50 MM TRIS-CL 2MM REMARK 280 PHMB , PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 20.63450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2169 O HOH A 2233 1.32 REMARK 500 O HOH A 2091 O HOH A 2200 1.58 REMARK 500 CG ASP A 34 O HOH A 2248 1.62 REMARK 500 O HOH A 2065 O HOH A 2218 1.64 REMARK 500 OD2 ASP A 34 O HOH A 2248 1.92 REMARK 500 C7 HGB A 265 O HOH A 2284 1.95 REMARK 500 OD2 ASP A 130 NZ LYS A 133 2.01 REMARK 500 OD1 ASP A 162 O HOH A 2243 2.09 REMARK 500 O TYR A 7 O HOH A 2383 2.14 REMARK 500 O HOH A 2314 O HOH A 2315 2.17 REMARK 500 O HOH A 2419 O HOH A 2426 2.18 REMARK 500 OD1 ASP A 34 O HOH A 2248 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O1 GOL A 1004 O HOH A 2112 2546 1.13 REMARK 500 C1 GOL A 1004 O HOH A 2117 2546 1.39 REMARK 500 CG ASP A 130 O HOH A 2208 1565 1.51 REMARK 500 O HOH A 2084 O HOH A 2233 1655 1.65 REMARK 500 OD2 ASP A 130 O HOH A 2208 1565 1.66 REMARK 500 CB ASP A 130 O HOH A 2208 1565 1.74 REMARK 500 NE2 GLN A 53 OD2 ASP A 165 2455 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 3 C HIS A 3 O 0.117 REMARK 500 GLU A 14 CD GLU A 14 OE2 0.160 REMARK 500 ARG A 27 CD ARG A 27 NE -0.232 REMARK 500 ARG A 27 CZ ARG A 27 NH2 -0.092 REMARK 500 TYR A 40 CZ TYR A 40 CE2 -0.086 REMARK 500 HIS A 64 CE1 HIS A 64 NE2 0.168 REMARK 500 HIS A 64 NE2 HIS A 64 CD2 -0.195 REMARK 500 LYS A 127 CE LYS A 127 NZ 0.153 REMARK 500 ASP A 130 CA ASP A 130 CB 0.138 REMARK 500 LYS A 159 CE LYS A 159 NZ 0.195 REMARK 500 SER A 220 CB SER A 220 OG -0.086 REMARK 500 GLU A 234 CG GLU A 234 CD -0.098 REMARK 500 GLU A 234 CD GLU A 234 OE1 0.069 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS A 3 CA - C - O ANGL. DEV. = -15.6 DEGREES REMARK 500 HIS A 3 O - C - N ANGL. DEV. = 13.8 DEGREES REMARK 500 HIS A 10 ND1 - CE1 - NE2 ANGL. DEV. = -6.7 DEGREES REMARK 500 HIS A 10 CE1 - NE2 - CD2 ANGL. DEV. = 5.1 DEGREES REMARK 500 GLU A 14 CG - CD - OE1 ANGL. DEV. = -12.2 DEGREES REMARK 500 ASP A 19 OD1 - CG - OD2 ANGL. DEV. = -11.7 DEGREES REMARK 500 ASP A 19 CB - CG - OD1 ANGL. DEV. = 7.8 DEGREES REMARK 500 PHE A 20 CB - CG - CD2 ANGL. DEV. = -4.6 DEGREES REMARK 500 GLU A 26 OE1 - CD - OE2 ANGL. DEV. = -8.1 DEGREES REMARK 500 ARG A 27 CG - CD - NE ANGL. DEV. = 26.8 DEGREES REMARK 500 ARG A 27 CD - NE - CZ ANGL. DEV. = 14.2 DEGREES REMARK 500 ARG A 27 NE - CZ - NH1 ANGL. DEV. = 10.1 DEGREES REMARK 500 ARG A 27 NE - CZ - NH2 ANGL. DEV. = -11.7 DEGREES REMARK 500 ASP A 34 OD1 - CG - OD2 ANGL. DEV. = -12.0 DEGREES REMARK 500 ASP A 34 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 TYR A 40 CB - CG - CD1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 58 NE - CZ - NH1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG A 58 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 HIS A 64 CB - CG - CD2 ANGL. DEV. = 7.4 DEGREES REMARK 500 HIS A 64 ND1 - CE1 - NE2 ANGL. DEV. = -12.3 DEGREES REMARK 500 ASP A 71 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 GLN A 74 OE1 - CD - NE2 ANGL. DEV. = 31.7 DEGREES REMARK 500 GLN A 74 CG - CD - OE1 ANGL. DEV. = -22.4 DEGREES REMARK 500 ASP A 75 OD1 - CG - OD2 ANGL. DEV. = -13.2 DEGREES REMARK 500 ASP A 75 CB - CG - OD1 ANGL. DEV. = 15.2 DEGREES REMARK 500 LYS A 76 O - C - N ANGL. DEV. = -11.9 DEGREES REMARK 500 ALA A 77 N - CA - CB ANGL. DEV. = -14.0 DEGREES REMARK 500 LYS A 80 CD - CE - NZ ANGL. DEV. = 33.0 DEGREES REMARK 500 ARG A 89 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 LYS A 112 CD - CE - NZ ANGL. DEV. = -20.6 DEGREES REMARK 500 LYS A 127 CD - CE - NZ ANGL. DEV. = 49.6 DEGREES REMARK 500 ASP A 130 OD1 - CG - OD2 ANGL. DEV. = -20.8 DEGREES REMARK 500 ASP A 130 CB - CG - OD1 ANGL. DEV. = 13.1 DEGREES REMARK 500 LYS A 159 CG - CD - CE ANGL. DEV. = 19.0 DEGREES REMARK 500 ASP A 162 CA - CB - CG ANGL. DEV. = 32.7 DEGREES REMARK 500 ASP A 162 OD1 - CG - OD2 ANGL. DEV. = -15.9 DEGREES REMARK 500 ASP A 162 CB - CG - OD1 ANGL. DEV. = -13.1 DEGREES REMARK 500 ASP A 162 CB - CG - OD2 ANGL. DEV. = 28.8 DEGREES REMARK 500 ASP A 165 OD1 - CG - OD2 ANGL. DEV. = 12.5 DEGREES REMARK 500 ASP A 165 CB - CG - OD2 ANGL. DEV. = -8.9 DEGREES REMARK 500 LYS A 168 CD - CE - NZ ANGL. DEV. = 16.9 DEGREES REMARK 500 LYS A 170 CD - CE - NZ ANGL. DEV. = 23.1 DEGREES REMARK 500 LYS A 172 CB - CG - CD ANGL. DEV. = 21.5 DEGREES REMARK 500 ASP A 175 CA - CB - CG ANGL. DEV. = -18.6 DEGREES REMARK 500 ASP A 175 OD1 - CG - OD2 ANGL. DEV. = 18.2 DEGREES REMARK 500 ASP A 175 CB - CG - OD1 ANGL. DEV. = -15.9 DEGREES REMARK 500 ASP A 180 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 182 NE - CZ - NH1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 182 NE - CZ - NH2 ANGL. DEV. = -10.1 DEGREES REMARK 500 GLU A 187 OE1 - CD - OE2 ANGL. DEV. = 10.2 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 59 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 27 58.73 -146.21 REMARK 500 LYS A 76 -84.35 -122.66 REMARK 500 GLU A 106 -61.74 -93.27 REMARK 500 LYS A 111 -2.76 74.15 REMARK 500 PHE A 176 66.46 -152.04 REMARK 500 ASN A 244 48.29 -95.48 REMARK 500 LYS A 252 -143.58 56.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ASP A 34 0.07 SIDE CHAIN REMARK 500 HIS A 64 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 94 NE2 REMARK 620 2 HIS A 96 NE2 103.3 REMARK 620 3 HIS A 119 ND1 113.0 98.8 REMARK 620 4 SUA A1003 N1 110.5 113.9 116.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HGB A 265 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 135 O REMARK 620 2 HGB A 265 C7 124.2 REMARK 620 3 GLN A 137 O 111.3 74.8 REMARK 620 4 CYS A 206 SG 84.0 151.7 93.2 REMARK 620 5 HOH A2284 O 61.6 76.2 135.9 126.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HGB A 265 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 137 O REMARK 620 2 HGB A 265 C7 100.7 REMARK 620 3 GLU A 205 O 93.7 88.9 REMARK 620 4 CYS A 206 SG 83.2 174.8 94.2 REMARK 620 5 HOH A2284 O 132.0 91.8 133.0 83.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HGB A 265 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SUA A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1006 DBREF 3K34 A 1 261 UNP P00918 CAH2_HUMAN 1 260 SEQRES 1 A 260 MET SER HIS HIS TRP GLY TYR GLY LYS HIS ASN GLY PRO SEQRES 2 A 260 GLU HIS TRP HIS LYS ASP PHE PRO ILE ALA LYS GLY GLU SEQRES 3 A 260 ARG GLN SER PRO VAL ASP ILE ASP THR HIS THR ALA LYS SEQRES 4 A 260 TYR ASP PRO SER LEU LYS PRO LEU SER VAL SER TYR ASP SEQRES 5 A 260 GLN ALA THR SER LEU ARG ILE LEU ASN ASN GLY HIS ALA SEQRES 6 A 260 PHE ASN VAL GLU PHE ASP ASP SER GLN ASP LYS ALA VAL SEQRES 7 A 260 LEU LYS GLY GLY PRO LEU ASP GLY THR TYR ARG LEU ILE SEQRES 8 A 260 GLN PHE HIS PHE HIS TRP GLY SER LEU ASP GLY GLN GLY SEQRES 9 A 260 SER GLU HIS THR VAL ASP LYS LYS LYS TYR ALA ALA GLU SEQRES 10 A 260 LEU HIS LEU VAL HIS TRP ASN THR LYS TYR GLY ASP PHE SEQRES 11 A 260 GLY LYS ALA VAL GLN GLN PRO ASP GLY LEU ALA VAL LEU SEQRES 12 A 260 GLY ILE PHE LEU LYS VAL GLY SER ALA LYS PRO GLY LEU SEQRES 13 A 260 GLN LYS VAL VAL ASP VAL LEU ASP SER ILE LYS THR LYS SEQRES 14 A 260 GLY LYS SER ALA ASP PHE THR ASN PHE ASP PRO ARG GLY SEQRES 15 A 260 LEU LEU PRO GLU SER LEU ASP TYR TRP THR TYR PRO GLY SEQRES 16 A 260 SER LEU THR THR PRO PRO LEU LEU GLU CYS VAL THR TRP SEQRES 17 A 260 ILE VAL LEU LYS GLU PRO ILE SER VAL SER SER GLU GLN SEQRES 18 A 260 VAL LEU LYS PHE ARG LYS LEU ASN PHE ASN GLY GLU GLY SEQRES 19 A 260 GLU PRO GLU GLU LEU MET VAL ASP ASN TRP ARG PRO ALA SEQRES 20 A 260 GLN PRO LEU LYS ASN ARG GLN ILE LYS ALA SER PHE LYS HET HGB A 265 12 HET ZN A1002 1 HET SUA A1003 21 HET GOL A1004 6 HET GOL A1005 6 HET GOL A1006 6 HETNAM HGB 4-(HYDROXYMERCURY)BENZOIC ACID HETNAM ZN ZINC ION HETNAM SUA (4-SULFAMOYL-PHENYL)-THIOCARBAMIC ACID O-(2-THIOPHEN-3- HETNAM 2 SUA YL-ETHYL) ESTER HETNAM GOL GLYCEROL HETSYN SUA CARBONIC ANHYDRASE II INHIBITOR 16923 HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 HGB C7 H6 HG O3 FORMUL 3 ZN ZN 2+ FORMUL 4 SUA C13 H14 N2 O3 S3 FORMUL 5 GOL 3(C3 H8 O3) FORMUL 8 HOH *249(H2 O) HELIX 1 1 HIS A 15 ASP A 19 5 5 HELIX 2 2 PHE A 20 GLY A 25 5 6 HELIX 3 3 LYS A 127 GLY A 129 5 3 HELIX 4 4 ASP A 130 VAL A 135 1 6 HELIX 5 5 LYS A 154 GLY A 156 5 3 HELIX 6 6 LEU A 157 LEU A 164 1 8 HELIX 7 7 ASP A 165 ILE A 167 5 3 HELIX 8 8 ASP A 180 LEU A 185 5 6 HELIX 9 9 SER A 219 ARG A 227 1 9 SHEET 1 A 2 ASP A 32 ILE A 33 0 SHEET 2 A 2 THR A 108 VAL A 109 1 O THR A 108 N ILE A 33 SHEET 1 B10 LYS A 39 TYR A 40 0 SHEET 2 B10 LYS A 257 ALA A 258 1 O ALA A 258 N LYS A 39 SHEET 3 B10 TYR A 191 GLY A 196 -1 N THR A 193 O LYS A 257 SHEET 4 B10 VAL A 207 LEU A 212 -1 O VAL A 207 N GLY A 196 SHEET 5 B10 LEU A 141 VAL A 150 1 N GLY A 145 O ILE A 210 SHEET 6 B10 ALA A 116 ASN A 124 -1 N LEU A 118 O ILE A 146 SHEET 7 B10 TYR A 88 TRP A 97 -1 N GLN A 92 O VAL A 121 SHEET 8 B10 PHE A 66 PHE A 70 -1 N VAL A 68 O PHE A 93 SHEET 9 B10 SER A 56 ASN A 61 -1 N LEU A 57 O GLU A 69 SHEET 10 B10 SER A 173 ASP A 175 -1 O ALA A 174 N ILE A 59 SHEET 1 C 6 LYS A 45 SER A 50 0 SHEET 2 C 6 VAL A 78 GLY A 82 -1 O LYS A 80 N SER A 48 SHEET 3 C 6 TYR A 88 TRP A 97 -1 O TYR A 88 N LEU A 79 SHEET 4 C 6 ALA A 116 ASN A 124 -1 O VAL A 121 N GLN A 92 SHEET 5 C 6 LEU A 141 VAL A 150 -1 O ILE A 146 N LEU A 118 SHEET 6 C 6 ILE A 216 VAL A 218 1 O ILE A 216 N PHE A 147 LINK NE2 HIS A 94 ZN ZN A1002 1555 1555 1.97 LINK NE2 HIS A 96 ZN ZN A1002 1555 1555 2.02 LINK ND1 HIS A 119 ZN ZN A1002 1555 1555 2.01 LINK O VAL A 135 HG BHGB A 265 1555 1555 3.03 LINK O GLN A 137 HG AHGB A 265 1555 1555 2.94 LINK O GLN A 137 HG BHGB A 265 1555 1555 3.17 LINK O GLU A 205 HG AHGB A 265 1555 1555 2.98 LINK SG ACYS A 206 HG AHGB A 265 1555 1555 2.31 LINK SG BCYS A 206 HG BHGB A 265 1555 1555 2.27 LINK HG BHGB A 265 O HOH A2284 1555 1555 2.58 LINK HG AHGB A 265 O HOH A2284 1555 1555 2.91 LINK ZN ZN A1002 N1 SUA A1003 1555 1555 1.94 CISPEP 1 SER A 29 PRO A 30 0 -2.84 CISPEP 2 PRO A 201 PRO A 202 0 11.37 SITE 1 AC1 7 VAL A 135 GLN A 136 GLN A 137 PRO A 138 SITE 2 AC1 7 GLU A 205 CYS A 206 HOH A2284 SITE 1 AC2 4 HIS A 94 HIS A 96 HIS A 119 SUA A1003 SITE 1 AC3 12 GLN A 92 HIS A 94 HIS A 96 HIS A 119 SITE 2 AC3 12 LEU A 198 THR A 199 THR A 200 TRP A 209 SITE 3 AC3 12 ZN A1002 GOL A1006 HOH A2138 HOH A2235 SITE 1 AC4 7 LYS A 111 LYS A 112 TYR A 128 HOH A2146 SITE 2 AC4 7 HOH A2425 HOH A2426 HOH A2457 SITE 1 AC5 7 GLU A 14 LYS A 24 GLN A 249 HOH A2012 SITE 2 AC5 7 HOH A2030 HOH A2053 HOH A2361 SITE 1 AC6 9 ASN A 62 HIS A 64 ALA A 65 ASN A 67 SITE 2 AC6 9 GLN A 92 HIS A 94 SUA A1003 HOH A2131 SITE 3 AC6 9 HOH A2158 CRYST1 42.045 41.269 71.821 90.00 104.23 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023784 0.000000 0.006032 0.00000 SCALE2 0.000000 0.024231 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014364 0.00000