HEADER OXIDOREDUCTASE 03-OCT-09 3K3O TITLE CRYSTAL STRUCTURE OF THE CATALYTIC CORE DOMAIN OF HUMAN PHF8 COMPLEXED TITLE 2 WITH ALPHA-KETOGLUTARATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHD FINGER PROTEIN 8; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES IN UNP 86-447; COMPND 5 SYNONYM: PHF8; COMPND 6 EC: 1.14.11.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PHF8; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2 (DE3) CELLS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS PHF8 (PHD FINGER PROTEIN 8), HISTONE DEMETHYLASE, CHROMATIN KEYWDS 2 MODIFICATION, METHYLATED H3K9, MENTAL RETARDATION, METAL-BINDING, KEYWDS 3 PHOSPHOPROTEIN, ZINC-FINGER, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR L.YU,Y.WANG,S.HUANG,J.WANG,Z.DENG,W.WU,W.GONG,Z.CHEN REVDAT 5 01-NOV-23 3K3O 1 REMARK SEQADV LINK REVDAT 4 01-NOV-17 3K3O 1 REMARK REVDAT 3 19-FEB-14 3K3O 1 JRNL REVDAT 2 13-JUL-11 3K3O 1 VERSN REVDAT 1 19-JAN-10 3K3O 0 JRNL AUTH L.YU,Y.WANG,S.HUANG,J.WANG,Z.DENG,Q.ZHANG,W.WU,X.ZHANG, JRNL AUTH 2 Z.LIU,W.GONG,Z.CHEN JRNL TITL STRUCTURAL INSIGHTS INTO A NOVEL HISTONE DEMETHYLASE PHF8 JRNL REF CELL RES. V. 20 166 2010 JRNL REFN ISSN 1001-0602 JRNL PMID 20101266 JRNL DOI 10.1038/CR.2010.8 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.7 REMARK 3 NUMBER OF REFLECTIONS : 18163 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 934 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1148 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.2930 REMARK 3 BIN FREE R VALUE SET COUNT : 63 REMARK 3 BIN FREE R VALUE : 0.3710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2664 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 109 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.84000 REMARK 3 B22 (A**2) : -1.57000 REMARK 3 B33 (A**2) : -0.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.311 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.205 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.144 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.474 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2745 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3739 ; 1.103 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 347 ; 5.423 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 111 ;35.371 ;23.604 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 400 ;15.242 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;16.665 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 432 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2082 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1744 ; 0.378 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2789 ; 0.709 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1001 ; 1.100 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 950 ; 1.710 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 91 A 96 REMARK 3 ORIGIN FOR THE GROUP (A): -7.5650 -19.8980 -7.1420 REMARK 3 T TENSOR REMARK 3 T11: 0.8535 T22: 0.8465 REMARK 3 T33: 1.3595 T12: 0.0181 REMARK 3 T13: -0.2861 T23: -0.3212 REMARK 3 L TENSOR REMARK 3 L11: 2.3104 L22: 5.6014 REMARK 3 L33: 14.8855 L12: -3.5659 REMARK 3 L13: -5.8492 L23: 9.1133 REMARK 3 S TENSOR REMARK 3 S11: -0.3324 S12: -0.2157 S13: -0.0083 REMARK 3 S21: 0.6111 S22: 0.5529 S23: -0.3117 REMARK 3 S31: 0.9651 S32: 0.7467 S33: -0.2205 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 97 A 118 REMARK 3 ORIGIN FOR THE GROUP (A): -29.8070 -11.4800 -16.4370 REMARK 3 T TENSOR REMARK 3 T11: 0.1569 T22: 0.2145 REMARK 3 T33: 0.2326 T12: -0.1652 REMARK 3 T13: 0.0692 T23: -0.0294 REMARK 3 L TENSOR REMARK 3 L11: 4.1300 L22: 9.6843 REMARK 3 L33: 5.1508 L12: -3.4805 REMARK 3 L13: 2.3320 L23: -1.1234 REMARK 3 S TENSOR REMARK 3 S11: -0.0128 S12: -0.0232 S13: -0.6227 REMARK 3 S21: 0.5556 S22: -0.1217 S23: 1.1988 REMARK 3 S31: 0.2707 S32: -0.3711 S33: 0.1346 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 119 A 135 REMARK 3 ORIGIN FOR THE GROUP (A): -25.9880 -10.7300 -21.0110 REMARK 3 T TENSOR REMARK 3 T11: 0.1400 T22: 0.2117 REMARK 3 T33: 0.2016 T12: -0.1070 REMARK 3 T13: -0.0166 T23: -0.0529 REMARK 3 L TENSOR REMARK 3 L11: 3.4933 L22: 7.1446 REMARK 3 L33: 6.2458 L12: -1.4125 REMARK 3 L13: 2.8184 L23: -1.0535 REMARK 3 S TENSOR REMARK 3 S11: 0.1290 S12: -0.0422 S13: -0.5730 REMARK 3 S21: -0.0913 S22: -0.0561 S23: 0.8039 REMARK 3 S31: 0.4940 S32: -0.4680 S33: -0.0729 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 136 A 173 REMARK 3 ORIGIN FOR THE GROUP (A): -3.5850 -6.4850 -30.8600 REMARK 3 T TENSOR REMARK 3 T11: 0.2213 T22: 0.3817 REMARK 3 T33: 0.2426 T12: 0.0352 REMARK 3 T13: 0.1741 T23: -0.0364 REMARK 3 L TENSOR REMARK 3 L11: 5.0596 L22: 6.3368 REMARK 3 L33: 5.6989 L12: -3.4670 REMARK 3 L13: 1.5155 L23: -2.3583 REMARK 3 S TENSOR REMARK 3 S11: 0.1854 S12: 0.8085 S13: 0.4072 REMARK 3 S21: -0.4591 S22: -0.3890 S23: -0.9840 REMARK 3 S31: -0.0037 S32: 0.6517 S33: 0.2036 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 174 A 194 REMARK 3 ORIGIN FOR THE GROUP (A): 0.8270 -9.8310 -27.2700 REMARK 3 T TENSOR REMARK 3 T11: 0.0821 T22: 0.2606 REMARK 3 T33: 0.2336 T12: 0.0204 REMARK 3 T13: 0.1215 T23: -0.0485 REMARK 3 L TENSOR REMARK 3 L11: 6.5198 L22: 10.0097 REMARK 3 L33: 4.7711 L12: -6.0097 REMARK 3 L13: 0.5369 L23: 1.3073 REMARK 3 S TENSOR REMARK 3 S11: 0.2315 S12: 0.4249 S13: 0.2240 REMARK 3 S21: -0.2361 S22: -0.0803 S23: -0.5888 REMARK 3 S31: 0.1735 S32: 0.3689 S33: -0.1512 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 195 A 208 REMARK 3 ORIGIN FOR THE GROUP (A): -16.1450 -1.1700 -34.3570 REMARK 3 T TENSOR REMARK 3 T11: 0.3060 T22: 0.4011 REMARK 3 T33: 0.1028 T12: 0.0112 REMARK 3 T13: 0.0592 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 6.3936 L22: 2.3633 REMARK 3 L33: 3.5427 L12: 0.2760 REMARK 3 L13: -1.7737 L23: 0.5390 REMARK 3 S TENSOR REMARK 3 S11: 0.2396 S12: 0.9727 S13: 0.3479 REMARK 3 S21: -0.7875 S22: -0.0514 S23: -0.0769 REMARK 3 S31: -0.3261 S32: -0.0615 S33: -0.1882 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 209 A 223 REMARK 3 ORIGIN FOR THE GROUP (A): -25.0250 8.0250 -25.8110 REMARK 3 T TENSOR REMARK 3 T11: 0.1857 T22: 0.3127 REMARK 3 T33: 0.0445 T12: 0.1252 REMARK 3 T13: -0.0471 T23: -0.0169 REMARK 3 L TENSOR REMARK 3 L11: 2.2947 L22: 10.8332 REMARK 3 L33: 2.9084 L12: 1.2331 REMARK 3 L13: 0.7141 L23: -3.4782 REMARK 3 S TENSOR REMARK 3 S11: -0.0913 S12: 0.5288 S13: 0.0964 REMARK 3 S21: -0.7734 S22: -0.0207 S23: 0.1718 REMARK 3 S31: -0.1233 S32: -0.1697 S33: 0.1120 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 224 A 256 REMARK 3 ORIGIN FOR THE GROUP (A): -11.8100 -0.6220 -20.4410 REMARK 3 T TENSOR REMARK 3 T11: 0.0577 T22: 0.1549 REMARK 3 T33: 0.1305 T12: -0.0164 REMARK 3 T13: 0.0096 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 2.1725 L22: 5.3000 REMARK 3 L33: 2.3536 L12: -1.1704 REMARK 3 L13: -0.5854 L23: -0.3155 REMARK 3 S TENSOR REMARK 3 S11: 0.0399 S12: 0.2151 S13: 0.3333 REMARK 3 S21: -0.0356 S22: -0.0482 S23: -0.7346 REMARK 3 S31: -0.0435 S32: 0.0473 S33: 0.0082 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 257 A 280 REMARK 3 ORIGIN FOR THE GROUP (A): -14.7340 -8.4760 -11.0610 REMARK 3 T TENSOR REMARK 3 T11: 0.1716 T22: 0.0885 REMARK 3 T33: 0.0455 T12: -0.0166 REMARK 3 T13: -0.0296 T23: -0.0059 REMARK 3 L TENSOR REMARK 3 L11: 2.4028 L22: 5.4125 REMARK 3 L33: 7.3734 L12: -0.5143 REMARK 3 L13: -0.0041 L23: 1.3781 REMARK 3 S TENSOR REMARK 3 S11: -0.1454 S12: -0.1559 S13: -0.2046 REMARK 3 S21: 0.6201 S22: 0.1067 S23: -0.2960 REMARK 3 S31: 0.2065 S32: -0.0075 S33: 0.0387 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 281 A 290 REMARK 3 ORIGIN FOR THE GROUP (A): -2.4610 -2.2550 -1.9550 REMARK 3 T TENSOR REMARK 3 T11: 0.2493 T22: 0.1245 REMARK 3 T33: 0.2065 T12: 0.0873 REMARK 3 T13: -0.0970 T23: -0.0238 REMARK 3 L TENSOR REMARK 3 L11: 14.7506 L22: 7.3891 REMARK 3 L33: 2.9435 L12: 1.3074 REMARK 3 L13: -0.6735 L23: 3.4001 REMARK 3 S TENSOR REMARK 3 S11: -0.2189 S12: -0.3662 S13: 0.0872 REMARK 3 S21: 0.1107 S22: 0.2882 S23: -0.7120 REMARK 3 S31: 0.2679 S32: 0.3586 S33: -0.0693 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 291 A 307 REMARK 3 ORIGIN FOR THE GROUP (A): -12.8190 -13.6060 -7.4390 REMARK 3 T TENSOR REMARK 3 T11: 0.3184 T22: 0.0705 REMARK 3 T33: 0.2190 T12: 0.0251 REMARK 3 T13: -0.0683 T23: 0.0750 REMARK 3 L TENSOR REMARK 3 L11: 1.7684 L22: 2.2988 REMARK 3 L33: 10.3635 L12: -0.1929 REMARK 3 L13: 1.0189 L23: 2.2307 REMARK 3 S TENSOR REMARK 3 S11: -0.0942 S12: -0.2129 S13: -0.4568 REMARK 3 S21: 0.6265 S22: 0.0046 S23: -0.2425 REMARK 3 S31: 0.7421 S32: 0.1055 S33: 0.0897 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 308 A 338 REMARK 3 ORIGIN FOR THE GROUP (A): -16.6500 -7.2650 -18.5930 REMARK 3 T TENSOR REMARK 3 T11: 0.0969 T22: 0.1148 REMARK 3 T33: 0.0316 T12: -0.0367 REMARK 3 T13: -0.0045 T23: -0.0403 REMARK 3 L TENSOR REMARK 3 L11: 1.8351 L22: 4.6454 REMARK 3 L33: 2.2952 L12: -1.5073 REMARK 3 L13: 0.2799 L23: -0.3049 REMARK 3 S TENSOR REMARK 3 S11: -0.0288 S12: 0.1949 S13: -0.0847 REMARK 3 S21: 0.0605 S22: 0.0117 S23: -0.1996 REMARK 3 S31: 0.2427 S32: -0.0052 S33: 0.0171 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 339 A 349 REMARK 3 ORIGIN FOR THE GROUP (A): -20.4740 6.6770 -8.4000 REMARK 3 T TENSOR REMARK 3 T11: 0.1085 T22: 0.0263 REMARK 3 T33: 0.0355 T12: -0.0104 REMARK 3 T13: -0.0519 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 10.3023 L22: 5.3542 REMARK 3 L33: 7.0329 L12: -0.0737 REMARK 3 L13: 2.3891 L23: -2.6049 REMARK 3 S TENSOR REMARK 3 S11: 0.1217 S12: -0.1981 S13: -0.0278 REMARK 3 S21: 0.4677 S22: -0.0696 S23: -0.3294 REMARK 3 S31: 0.3014 S32: -0.1549 S33: -0.0521 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 350 A 363 REMARK 3 ORIGIN FOR THE GROUP (A): -11.0010 9.1840 -12.3810 REMARK 3 T TENSOR REMARK 3 T11: 0.3481 T22: 0.3666 REMARK 3 T33: 0.5317 T12: -0.0491 REMARK 3 T13: -0.0947 T23: 0.0579 REMARK 3 L TENSOR REMARK 3 L11: 7.2717 L22: 1.3324 REMARK 3 L33: 13.4586 L12: -3.0775 REMARK 3 L13: 8.1122 L23: -3.3150 REMARK 3 S TENSOR REMARK 3 S11: 0.0259 S12: 0.6914 S13: 0.4617 REMARK 3 S21: 0.0180 S22: -0.2775 S23: -0.3154 REMARK 3 S31: 0.0503 S32: 1.5352 S33: 0.2516 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 364 A 383 REMARK 3 ORIGIN FOR THE GROUP (A): -30.6620 15.5430 -16.7590 REMARK 3 T TENSOR REMARK 3 T11: 0.1075 T22: 0.2000 REMARK 3 T33: 0.0212 T12: 0.0461 REMARK 3 T13: -0.0076 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 9.7028 L22: 3.8208 REMARK 3 L33: 2.4987 L12: 0.6098 REMARK 3 L13: -2.3544 L23: 0.7464 REMARK 3 S TENSOR REMARK 3 S11: -0.1378 S12: 0.7728 S13: 0.1028 REMARK 3 S21: -0.0599 S22: 0.0153 S23: 0.1926 REMARK 3 S31: -0.1798 S32: -0.5223 S33: 0.1226 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 384 A 392 REMARK 3 ORIGIN FOR THE GROUP (A): -42.7680 9.0560 -13.8090 REMARK 3 T TENSOR REMARK 3 T11: 0.0293 T22: 0.4316 REMARK 3 T33: 0.3868 T12: -0.0293 REMARK 3 T13: 0.0870 T23: -0.1360 REMARK 3 L TENSOR REMARK 3 L11: 11.1520 L22: 10.6026 REMARK 3 L33: 4.9381 L12: -2.6872 REMARK 3 L13: 3.7055 L23: -2.4844 REMARK 3 S TENSOR REMARK 3 S11: -0.1290 S12: 0.0071 S13: -0.0229 REMARK 3 S21: 0.4365 S22: -0.0164 S23: 1.0507 REMARK 3 S31: -0.1037 S32: -0.7475 S33: 0.1455 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 393 A 408 REMARK 3 ORIGIN FOR THE GROUP (A): -27.2120 14.9570 -7.3710 REMARK 3 T TENSOR REMARK 3 T11: 0.1228 T22: 0.0875 REMARK 3 T33: 0.0176 T12: 0.0441 REMARK 3 T13: 0.0201 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 7.6215 L22: 9.8942 REMARK 3 L33: 4.0753 L12: 5.5717 REMARK 3 L13: -0.2934 L23: 1.8568 REMARK 3 S TENSOR REMARK 3 S11: -0.0362 S12: -0.0480 S13: 0.2188 REMARK 3 S21: 0.6319 S22: -0.0763 S23: 0.3195 REMARK 3 S31: -0.0915 S32: -0.3965 S33: 0.1124 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 409 A 415 REMARK 3 ORIGIN FOR THE GROUP (A): -15.2510 24.5540 -5.6760 REMARK 3 T TENSOR REMARK 3 T11: 0.1116 T22: 0.0131 REMARK 3 T33: 0.0419 T12: -0.0093 REMARK 3 T13: -0.0262 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 4.9409 L22: 11.1191 REMARK 3 L33: 13.6559 L12: -4.2966 REMARK 3 L13: -1.5959 L23: 2.5114 REMARK 3 S TENSOR REMARK 3 S11: -0.1437 S12: -0.0645 S13: -0.0854 REMARK 3 S21: 0.4632 S22: -0.0545 S23: 0.0596 REMARK 3 S31: -0.0772 S32: 0.2590 S33: 0.1982 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 416 A 434 REMARK 3 ORIGIN FOR THE GROUP (A): -24.2210 23.5210 -14.1490 REMARK 3 T TENSOR REMARK 3 T11: 0.2240 T22: 0.1019 REMARK 3 T33: 0.1390 T12: 0.0590 REMARK 3 T13: 0.0280 T23: 0.0961 REMARK 3 L TENSOR REMARK 3 L11: 5.6476 L22: 4.1761 REMARK 3 L33: 4.3407 L12: -0.1816 REMARK 3 L13: -0.7981 L23: 1.0185 REMARK 3 S TENSOR REMARK 3 S11: -0.0535 S12: 0.6108 S13: 0.8063 REMARK 3 S21: 0.0187 S22: 0.1051 S23: 0.0312 REMARK 3 S31: -0.5324 S32: -0.2780 S33: -0.0516 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 435 A 445 REMARK 3 ORIGIN FOR THE GROUP (A): -43.2560 16.2120 -4.4390 REMARK 3 T TENSOR REMARK 3 T11: 0.2354 T22: 0.1646 REMARK 3 T33: 0.1785 T12: 0.0689 REMARK 3 T13: 0.1320 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 11.2667 L22: 2.0259 REMARK 3 L33: 9.9767 L12: 4.7691 REMARK 3 L13: -6.3836 L23: -2.9129 REMARK 3 S TENSOR REMARK 3 S11: -0.0134 S12: 0.4714 S13: 0.5890 REMARK 3 S21: -0.0050 S22: 0.2173 S23: 0.2413 REMARK 3 S31: -0.0312 S32: -0.7823 S33: -0.2039 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 3K3O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055505. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 200.0 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19197 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.6 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : 0.04400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 48.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 4.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.52400 REMARK 200 R SYM FOR SHELL (I) : 0.46900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2YU2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200MM KCL, 100MM MES, PH 6.5, 20% REMARK 280 PEG5K, 5MM H3K9ME2, 1.7MM KG, 1MM DTT, 1MM FE2+, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.04600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.41000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.26600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.41000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.04600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.26600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 85 REMARK 465 THR A 86 REMARK 465 PHE A 87 REMARK 465 VAL A 88 REMARK 465 ARG A 89 REMARK 465 GLU A 90 REMARK 465 ASP A 154 REMARK 465 THR A 355 REMARK 465 ALA A 356 REMARK 465 ASP A 357 REMARK 465 LEU A 358 REMARK 465 GLN A 446 REMARK 465 ASN A 447 REMARK 465 LEU A 448 REMARK 465 GLU A 449 REMARK 465 HIS A 450 REMARK 465 HIS A 451 REMARK 465 HIS A 452 REMARK 465 HIS A 453 REMARK 465 HIS A 454 REMARK 465 HIS A 455 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 92 NE CZ NH1 NH2 REMARK 470 SER A 98 OG REMARK 470 ASP A 100 CG OD1 OD2 REMARK 470 GLU A 101 CG CD OE1 OE2 REMARK 470 GLU A 118 CG CD OE1 OE2 REMARK 470 LYS A 129 CD CE NZ REMARK 470 ASP A 131 CG OD1 OD2 REMARK 470 ARG A 145 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 146 CG OD1 OD2 REMARK 470 GLU A 148 CG CD OE1 OE2 REMARK 470 LYS A 155 CG CD CE NZ REMARK 470 GLU A 156 CG CD OE1 OE2 REMARK 470 ILE A 157 CG1 CG2 CD1 REMARK 470 ASP A 161 CG OD1 OD2 REMARK 470 ARG A 164 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 165 CG CD OE1 NE2 REMARK 470 ASP A 167 CG OD1 OD2 REMARK 470 LYS A 169 CG CD CE NZ REMARK 470 MET A 170 CE REMARK 470 LYS A 171 CG CD CE NZ REMARK 470 ASP A 174 CG OD1 OD2 REMARK 470 LYS A 177 CG CD CE NZ REMARK 470 LYS A 183 CG CD CE NZ REMARK 470 GLU A 185 CG CD OE1 OE2 REMARK 470 LYS A 186 CG CD CE NZ REMARK 470 VAL A 187 CG1 CG2 REMARK 470 SER A 192 OG REMARK 470 ARG A 199 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 203 CG CD1 CD2 REMARK 470 GLU A 205 OE1 OE2 REMARK 470 LYS A 208 CD CE NZ REMARK 470 LYS A 212 CD CE NZ REMARK 470 GLU A 227 CG CD OE1 OE2 REMARK 470 ARG A 240 CZ NH1 NH2 REMARK 470 LYS A 261 CG CD CE NZ REMARK 470 SER A 286 OG REMARK 470 ASN A 287 CG OD1 ND2 REMARK 470 GLU A 290 CG CD OE1 OE2 REMARK 470 LYS A 299 CG CD CE NZ REMARK 470 LYS A 302 CE NZ REMARK 470 GLU A 348 CG CD OE1 OE2 REMARK 470 LYS A 351 CG CD CE NZ REMARK 470 PHE A 359 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 360 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 373 CD CE NZ REMARK 470 ASP A 377 CG OD1 OD2 REMARK 470 ARG A 386 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 387 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 410 NZ REMARK 470 GLU A 411 CG CD OE1 OE2 REMARK 470 GLU A 419 CD OE1 OE2 REMARK 470 ARG A 425 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 427 CG1 CG2 REMARK 470 GLN A 428 CD OE1 NE2 REMARK 470 LYS A 431 CG CD CE NZ REMARK 470 ARG A 438 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 94 -134.36 -116.50 REMARK 500 LYS A 183 52.69 -144.33 REMARK 500 CYS A 224 148.75 -171.69 REMARK 500 ASP A 326 125.18 -37.01 REMARK 500 LEU A 353 -91.60 -86.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 1 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 48 O REMARK 620 2 HIS A 247 NE2 169.9 REMARK 620 3 ASP A 249 OD1 93.9 95.1 REMARK 620 4 HIS A 319 NE2 85.2 89.3 97.6 REMARK 620 5 AKG A 456 O2 90.5 94.2 87.7 173.4 REMARK 620 6 AKG A 456 O5 83.3 87.9 176.2 84.7 89.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AKG A 456 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3K3N RELATED DB: PDB DBREF 3K3O A 86 447 UNP Q5JPR9 Q5JPR9_HUMAN 86 447 SEQADV 3K3O MET A 85 UNP Q5JPR9 EXPRESSION TAG SEQADV 3K3O LEU A 448 UNP Q5JPR9 EXPRESSION TAG SEQADV 3K3O GLU A 449 UNP Q5JPR9 EXPRESSION TAG SEQADV 3K3O HIS A 450 UNP Q5JPR9 EXPRESSION TAG SEQADV 3K3O HIS A 451 UNP Q5JPR9 EXPRESSION TAG SEQADV 3K3O HIS A 452 UNP Q5JPR9 EXPRESSION TAG SEQADV 3K3O HIS A 453 UNP Q5JPR9 EXPRESSION TAG SEQADV 3K3O HIS A 454 UNP Q5JPR9 EXPRESSION TAG SEQADV 3K3O HIS A 455 UNP Q5JPR9 EXPRESSION TAG SEQRES 1 A 371 MET THR PHE VAL ARG GLU LEU ARG SER ARG THR PHE ASP SEQRES 2 A 371 SER SER ASP GLU VAL ILE LEU LYS PRO THR GLY ASN GLN SEQRES 3 A 371 LEU THR VAL GLU PHE LEU GLU GLU ASN SER PHE SER VAL SEQRES 4 A 371 PRO ILE LEU VAL LEU LYS LYS ASP GLY LEU GLY MET THR SEQRES 5 A 371 LEU PRO SER PRO SER PHE THR VAL ARG ASP VAL GLU HIS SEQRES 6 A 371 TYR VAL GLY SER ASP LYS GLU ILE ASP VAL ILE ASP VAL SEQRES 7 A 371 THR ARG GLN ALA ASP CYS LYS MET LYS LEU GLY ASP PHE SEQRES 8 A 371 VAL LYS TYR TYR TYR SER GLY LYS ARG GLU LYS VAL LEU SEQRES 9 A 371 ASN VAL ILE SER LEU GLU PHE SER ASP THR ARG LEU SER SEQRES 10 A 371 ASN LEU VAL GLU THR PRO LYS ILE VAL ARG LYS LEU SER SEQRES 11 A 371 TRP VAL GLU ASN LEU TRP PRO GLU GLU CYS VAL PHE GLU SEQRES 12 A 371 ARG PRO ASN VAL GLN LYS TYR CYS LEU MET SER VAL ARG SEQRES 13 A 371 ASP SER TYR THR ASP PHE HIS ILE ASP PHE GLY GLY THR SEQRES 14 A 371 SER VAL TRP TYR HIS VAL LEU LYS GLY GLU LYS ILE PHE SEQRES 15 A 371 TYR LEU ILE ARG PRO THR ASN ALA ASN LEU THR LEU PHE SEQRES 16 A 371 GLU CYS TRP SER SER SER SER ASN GLN ASN GLU MET PHE SEQRES 17 A 371 PHE GLY ASP GLN VAL ASP LYS CYS TYR LYS CYS SER VAL SEQRES 18 A 371 LYS GLN GLY GLN THR LEU PHE ILE PRO THR GLY TRP ILE SEQRES 19 A 371 HIS ALA VAL LEU THR PRO VAL ASP CYS LEU ALA PHE GLY SEQRES 20 A 371 GLY ASN PHE LEU HIS SER LEU ASN ILE GLU MET GLN LEU SEQRES 21 A 371 LYS ALA TYR GLU ILE GLU LYS ARG LEU SER THR ALA ASP SEQRES 22 A 371 LEU PHE ARG PHE PRO ASN PHE GLU THR ILE CYS TRP TYR SEQRES 23 A 371 VAL GLY LYS HIS ILE LEU ASP ILE PHE ARG GLY LEU ARG SEQRES 24 A 371 GLU ASN ARG ARG HIS PRO ALA SER TYR LEU VAL HIS GLY SEQRES 25 A 371 GLY LYS ALA LEU ASN LEU ALA PHE ARG ALA TRP THR ARG SEQRES 26 A 371 LYS GLU ALA LEU PRO ASP HIS GLU ASP GLU ILE PRO GLU SEQRES 27 A 371 THR VAL ARG THR VAL GLN LEU ILE LYS ASP LEU ALA ARG SEQRES 28 A 371 GLU ILE ARG LEU VAL GLU ASP ILE PHE GLN GLN ASN LEU SEQRES 29 A 371 GLU HIS HIS HIS HIS HIS HIS HET AKG A 456 10 HET FE2 A 1 1 HETNAM AKG 2-OXOGLUTARIC ACID HETNAM FE2 FE (II) ION FORMUL 2 AKG C5 H6 O5 FORMUL 3 FE2 FE 2+ FORMUL 4 HOH *109(H2 O) HELIX 1 1 THR A 112 SER A 120 1 9 HELIX 2 2 THR A 143 GLY A 152 1 10 HELIX 3 3 LEU A 172 TYR A 180 1 9 HELIX 4 4 THR A 198 LEU A 203 5 6 HELIX 5 5 PRO A 207 SER A 214 1 8 HELIX 6 6 SER A 214 TRP A 220 1 7 HELIX 7 7 ASP A 249 THR A 253 5 5 HELIX 8 8 THR A 272 SER A 284 1 13 HELIX 9 9 ASN A 287 MET A 291 5 5 HELIX 10 10 PHE A 292 GLN A 296 5 5 HELIX 11 11 ASN A 339 SER A 354 1 16 HELIX 12 12 ASN A 363 ASN A 385 1 23 HELIX 13 13 ALA A 390 ARG A 409 1 20 HELIX 14 14 ALA A 412 ILE A 420 5 9 HELIX 15 15 ARG A 425 ASP A 442 1 18 SHEET 1 A 5 ILE A 125 VAL A 127 0 SHEET 2 A 5 THR A 310 ILE A 313 -1 O THR A 310 N VAL A 127 SHEET 3 A 5 SER A 254 ILE A 269 -1 N VAL A 255 O ILE A 313 SHEET 4 A 5 ILE A 318 PHE A 334 -1 O PHE A 330 N HIS A 258 SHEET 5 A 5 SER A 242 HIS A 247 -1 N HIS A 247 O HIS A 319 SHEET 1 B 7 ALA A 166 LYS A 171 0 SHEET 2 B 7 GLU A 156 ASP A 161 -1 N ASP A 161 O ALA A 166 SHEET 3 B 7 LEU A 188 GLU A 194 -1 O ASN A 189 N ILE A 160 SHEET 4 B 7 TYR A 234 SER A 238 -1 O CYS A 235 N LEU A 193 SHEET 5 B 7 ILE A 318 PHE A 334 -1 O CYS A 327 N SER A 238 SHEET 6 B 7 SER A 254 ILE A 269 -1 N HIS A 258 O PHE A 330 SHEET 7 B 7 TYR A 301 LYS A 306 -1 O VAL A 305 N LYS A 264 LINK FE FE2 A 1 O HOH A 48 1555 1555 2.05 LINK FE FE2 A 1 NE2 HIS A 247 1555 1555 1.91 LINK FE FE2 A 1 OD1 ASP A 249 1555 1555 2.04 LINK FE FE2 A 1 NE2 HIS A 319 1555 1555 1.88 LINK FE FE2 A 1 O2 AKG A 456 1555 1555 1.75 LINK FE FE2 A 1 O5 AKG A 456 1555 1555 2.05 SITE 1 AC1 13 FE2 A 1 HOH A 29 HOH A 48 ASN A 189 SITE 2 AC1 13 ILE A 191 LEU A 236 THR A 244 HIS A 247 SITE 3 AC1 13 ASP A 249 TYR A 257 LYS A 264 HIS A 319 SITE 4 AC1 13 VAL A 321 SITE 1 AC2 5 HOH A 48 HIS A 247 ASP A 249 HIS A 319 SITE 2 AC2 5 AKG A 456 CRYST1 52.092 52.532 134.820 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019197 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019036 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007417 0.00000