HEADER OXIDOREDUCTASE 07-OCT-09 3K5P TITLE CRYSTAL STRUCTURE OF AMINO ACID-BINDING ACT: D-ISOMER SPECIFIC 2- TITLE 2 HYDROXYACID DEHYDROGENASE CATALYTIC DOMAIN FROM BRUCELLA MELITENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-3-PHOSPHOGLYCERATE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.1.95; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRUCELLA MELITENSIS BIOVAR ABORTUS; SOURCE 3 ORGANISM_TAXID: 359391; SOURCE 4 STRAIN: BIOVAR ABORTUS 2308; SOURCE 5 GENE: BMEII0813; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: AVA0421 KEYWDS NIAID, SSGCID, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS KEYWDS 2 DISEASE, BRUCELLOSIS, COCCOBACILLUS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 5 06-SEP-23 3K5P 1 REMARK REVDAT 4 13-OCT-21 3K5P 1 REMARK SEQADV REVDAT 3 01-NOV-17 3K5P 1 REMARK REVDAT 2 13-JUL-11 3K5P 1 VERSN REVDAT 1 03-NOV-09 3K5P 0 JRNL AUTH T.E.EDWARDS,J.ABENDROTH,E.R.SMITH, JRNL AUTH 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL AUTH 3 (SSGCID) JRNL TITL CRYSTAL STRUCTURE OF AMINO ACID-BINDING ACT: D-ISOMER JRNL TITL 2 SPECIFIC 2-HYDROXYACID DEHYDROGENASE CATALYTIC DOMAIN FROM JRNL TITL 3 BRUCELLA MELITENSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 29249 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1485 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1685 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.16 REMARK 3 BIN R VALUE (WORKING SET) : 0.1930 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3028 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 206 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.61000 REMARK 3 B22 (A**2) : 0.61000 REMARK 3 B33 (A**2) : -0.92000 REMARK 3 B12 (A**2) : 0.31000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.191 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.164 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.331 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3139 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4257 ; 1.385 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 411 ; 5.600 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 133 ;31.747 ;23.835 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 535 ;13.216 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;14.715 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 497 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2347 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2000 ; 0.676 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3224 ; 1.247 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1139 ; 2.161 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1026 ; 3.561 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 108 REMARK 3 ORIGIN FOR THE GROUP (A): 26.3586 16.7063 1.9451 REMARK 3 T TENSOR REMARK 3 T11: 0.2378 T22: 0.0120 REMARK 3 T33: 0.0860 T12: -0.0105 REMARK 3 T13: 0.0024 T23: -0.0225 REMARK 3 L TENSOR REMARK 3 L11: 2.9259 L22: 3.4385 REMARK 3 L33: 5.0239 L12: 0.1789 REMARK 3 L13: -1.6390 L23: 0.7298 REMARK 3 S TENSOR REMARK 3 S11: -0.1622 S12: 0.0714 S13: -0.3317 REMARK 3 S21: 0.0074 S22: 0.0447 S23: -0.0671 REMARK 3 S31: 0.7963 S32: 0.0476 S33: 0.1174 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 109 A 221 REMARK 3 ORIGIN FOR THE GROUP (A): 8.0498 32.4838 -26.6988 REMARK 3 T TENSOR REMARK 3 T11: 0.0919 T22: 0.1369 REMARK 3 T33: 0.1037 T12: 0.0471 REMARK 3 T13: 0.0481 T23: -0.0224 REMARK 3 L TENSOR REMARK 3 L11: 1.5437 L22: 1.4255 REMARK 3 L33: 0.7912 L12: -0.3819 REMARK 3 L13: -0.3241 L23: 0.6033 REMARK 3 S TENSOR REMARK 3 S11: 0.0166 S12: -0.0639 S13: 0.1790 REMARK 3 S21: 0.0597 S22: 0.0206 S23: -0.0386 REMARK 3 S31: -0.0831 S32: -0.0226 S33: -0.0372 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 222 A 291 REMARK 3 ORIGIN FOR THE GROUP (A): -0.8451 22.0701 -20.8603 REMARK 3 T TENSOR REMARK 3 T11: 0.1010 T22: 0.1553 REMARK 3 T33: 0.1162 T12: 0.0412 REMARK 3 T13: 0.0850 T23: -0.0246 REMARK 3 L TENSOR REMARK 3 L11: 2.8464 L22: 2.4828 REMARK 3 L33: 0.7702 L12: -0.8869 REMARK 3 L13: -0.3437 L23: 0.1842 REMARK 3 S TENSOR REMARK 3 S11: -0.0759 S12: -0.1487 S13: -0.1972 REMARK 3 S21: 0.1002 S22: 0.0210 S23: 0.2046 REMARK 3 S31: -0.0047 S32: 0.0563 S33: 0.0549 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 292 A 412 REMARK 3 ORIGIN FOR THE GROUP (A): 28.0301 31.9363 11.1999 REMARK 3 T TENSOR REMARK 3 T11: 0.1280 T22: 0.0987 REMARK 3 T33: 0.1092 T12: -0.0354 REMARK 3 T13: -0.0045 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.3975 L22: 0.9520 REMARK 3 L33: 0.9440 L12: -0.0365 REMARK 3 L13: 0.1370 L23: 0.6699 REMARK 3 S TENSOR REMARK 3 S11: 0.0380 S12: -0.0193 S13: -0.0309 REMARK 3 S21: 0.1187 S22: 0.0021 S23: -0.1191 REMARK 3 S31: 0.0518 S32: 0.1036 S33: -0.0401 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 3K5P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055578. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29302 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 38.683 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 17.30 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.55400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.280 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: 2P9C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28 MG/ML PROTEIN IN 25 MM HEPES PH 7, REMARK 280 0.3 M NACL, 10% GLYCEROL AGAINST CRYO FULL CONDITION B3: 50% PEG REMARK 280 400, 5% PEG 1000, 10% GLYCEROL, 0.1 M MES PH 6.0, CRYSTAL REMARK 280 TRACKING ID 204157B3, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 126.14333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 63.07167 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 126.14333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.07167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 126.14333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 63.07167 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 126.14333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 63.07167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 59850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 48.94550 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 84.77609 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 -63.07167 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 48.94550 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 84.77609 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -63.07167 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLU A 3 REMARK 465 ARG A 4 REMARK 465 LEU A 5 REMARK 465 SER A 6 REMARK 465 LEU A 7 REMARK 465 SER A 215 REMARK 465 LYS A 216 REMARK 465 SER A 217 REMARK 465 THR A 218 REMARK 465 SER A 219 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 11 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 41 CG CD CE NZ REMARK 470 LYS A 50 CG CD CE NZ REMARK 470 ARG A 63 CG CD NE CZ NH1 NH2 REMARK 470 SER A 214 OG REMARK 470 GLN A 397 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 61 -134.09 -118.94 REMARK 500 ASN A 104 -166.43 -120.73 REMARK 500 GLU A 141 60.83 -108.16 REMARK 500 TYR A 160 59.42 -110.18 REMARK 500 ALA A 240 -86.21 -113.49 REMARK 500 ALA A 272 5.99 -69.27 REMARK 500 SER A 273 167.14 172.64 REMARK 500 ASP A 375 -157.80 -137.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 416 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: BRABA.00021.A RELATED DB: TARGETDB DBREF 3K5P A 1 412 UNP Q2YK82 Q2YK82_BRUA2 1 412 SEQADV 3K5P GLY A -3 UNP Q8YBS3 EXPRESSION TAG SEQADV 3K5P PRO A -2 UNP Q8YBS3 EXPRESSION TAG SEQADV 3K5P GLY A -1 UNP Q8YBS3 EXPRESSION TAG SEQADV 3K5P SER A 0 UNP Q8YBS3 EXPRESSION TAG SEQADV 3K5P ASP A 244 UNP Q8YBS3 VAL 244 ENGINEERED MUTATION SEQRES 1 A 416 GLY PRO GLY SER MET THR GLU ARG LEU SER LEU SER ARG SEQRES 2 A 416 ASP ARG ILE ASN VAL LEU LEU LEU GLU GLY ILE SER GLN SEQRES 3 A 416 THR ALA VAL GLU TYR PHE LYS SER SER GLY TYR THR ASN SEQRES 4 A 416 VAL THR HIS LEU PRO LYS ALA LEU ASP LYS ALA ASP LEU SEQRES 5 A 416 ILE LYS ALA ILE SER SER ALA HIS ILE ILE GLY ILE ARG SEQRES 6 A 416 SER ARG THR GLN LEU THR GLU GLU ILE PHE ALA ALA ALA SEQRES 7 A 416 ASN ARG LEU ILE ALA VAL GLY CYS PHE SER VAL GLY THR SEQRES 8 A 416 ASN GLN VAL GLU LEU LYS ALA ALA ARG LYS ARG GLY ILE SEQRES 9 A 416 PRO VAL PHE ASN ALA PRO PHE SER ASN THR ARG SER VAL SEQRES 10 A 416 ALA GLU LEU VAL ILE GLY GLU ILE ILE MET LEU MET ARG SEQRES 11 A 416 ARG ILE PHE PRO ARG SER VAL SER ALA HIS ALA GLY GLY SEQRES 12 A 416 TRP GLU LYS THR ALA ILE GLY SER ARG GLU VAL ARG GLY SEQRES 13 A 416 LYS THR LEU GLY ILE VAL GLY TYR GLY ASN ILE GLY SER SEQRES 14 A 416 GLN VAL GLY ASN LEU ALA GLU SER LEU GLY MET THR VAL SEQRES 15 A 416 ARG TYR TYR ASP THR SER ASP LYS LEU GLN TYR GLY ASN SEQRES 16 A 416 VAL LYS PRO ALA ALA SER LEU ASP GLU LEU LEU LYS THR SEQRES 17 A 416 SER ASP VAL VAL SER LEU HIS VAL PRO SER SER LYS SER SEQRES 18 A 416 THR SER LYS LEU ILE THR GLU ALA LYS LEU ARG LYS MET SEQRES 19 A 416 LYS LYS GLY ALA PHE LEU ILE ASN ASN ALA ARG GLY SER SEQRES 20 A 416 ASP VAL ASP LEU GLU ALA LEU ALA LYS VAL LEU GLN GLU SEQRES 21 A 416 GLY HIS LEU ALA GLY ALA ALA ILE ASP VAL PHE PRO VAL SEQRES 22 A 416 GLU PRO ALA SER ASN GLY GLU ARG PHE SER THR PRO LEU SEQRES 23 A 416 GLN GLY LEU GLU ASN VAL ILE LEU THR PRO HIS ILE GLY SEQRES 24 A 416 GLY SER THR GLU GLU ALA GLN GLU ARG ILE GLY THR GLU SEQRES 25 A 416 VAL THR ARG LYS LEU VAL GLU TYR SER ASP VAL GLY SER SEQRES 26 A 416 THR VAL GLY ALA VAL ASN PHE PRO GLN VAL GLN LEU PRO SEQRES 27 A 416 PRO ARG PRO THR GLY THR ARG PHE MET HIS VAL HIS GLU SEQRES 28 A 416 ASN ARG PRO GLY ILE LEU ASN SER LEU MET ASN VAL PHE SEQRES 29 A 416 SER HIS HIS HIS ILE ASN ILE ALA SER GLN PHE LEU GLN SEQRES 30 A 416 THR ASP GLY GLU VAL GLY TYR LEU VAL MET GLU ALA ASP SEQRES 31 A 416 GLY VAL GLY GLU ALA SER ASP ALA VAL LEU GLN GLU ILE SEQRES 32 A 416 ARG GLU ILE PRO GLY THR ILE ARG ALA ARG LEU LEU TYR HET EDO A 413 4 HET GOL A 414 6 HET GOL A 415 6 HET GOL A 416 6 HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 EDO C2 H6 O2 FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 HOH *206(H2 O) HELIX 1 1 SER A 8 ILE A 12 5 5 HELIX 2 2 SER A 21 SER A 31 1 11 HELIX 3 3 ASP A 44 SER A 53 1 10 HELIX 4 4 THR A 67 ALA A 74 1 8 HELIX 5 5 GLU A 91 ARG A 98 1 8 HELIX 6 6 ASN A 109 ARG A 126 1 18 HELIX 7 7 ARG A 127 ALA A 137 1 11 HELIX 8 8 GLY A 161 LEU A 174 1 14 HELIX 9 9 SER A 197 SER A 205 1 9 HELIX 10 10 THR A 223 MET A 230 1 8 HELIX 11 11 ASP A 246 GLU A 256 1 11 HELIX 12 12 THR A 298 GLY A 320 1 23 HELIX 13 13 GLY A 351 HIS A 363 1 13 HELIX 14 14 VAL A 388 GLU A 401 1 14 SHEET 1 A 5 VAL A 36 HIS A 38 0 SHEET 2 A 5 VAL A 14 LEU A 16 1 N LEU A 16 O THR A 37 SHEET 3 A 5 ILE A 57 ILE A 60 1 O ILE A 57 N LEU A 15 SHEET 4 A 5 ALA A 79 CYS A 82 1 O GLY A 81 N ILE A 58 SHEET 5 A 5 VAL A 102 PHE A 103 1 O PHE A 103 N CYS A 82 SHEET 1 B 7 LYS A 193 PRO A 194 0 SHEET 2 B 7 THR A 177 TYR A 181 1 N TYR A 180 O LYS A 193 SHEET 3 B 7 THR A 154 VAL A 158 1 N LEU A 155 O THR A 177 SHEET 4 B 7 VAL A 207 LEU A 210 1 O VAL A 207 N GLY A 156 SHEET 5 B 7 ALA A 234 ASN A 238 1 O ILE A 237 N VAL A 208 SHEET 6 B 7 LEU A 259 ILE A 264 1 O ALA A 263 N ASN A 238 SHEET 7 B 7 VAL A 288 LEU A 290 1 O ILE A 289 N ALA A 262 SHEET 1 C 4 ILE A 367 THR A 374 0 SHEET 2 C 4 GLY A 379 ALA A 385 -1 O TYR A 380 N GLN A 373 SHEET 3 C 4 THR A 340 HIS A 346 -1 N PHE A 342 O MET A 383 SHEET 4 C 4 THR A 405 LEU A 411 -1 O ARG A 407 N VAL A 345 SITE 1 AC1 5 ARG A 148 ASP A 206 LYS A 231 LYS A 232 SITE 2 AC1 5 GLY A 233 SITE 1 AC2 4 ASP A 182 THR A 183 VAL A 212 PRO A 213 SITE 1 AC3 7 PHE A 107 SER A 108 THR A 110 ARG A 111 SITE 2 AC3 7 ARG A 151 GLN A 166 ARG A 304 SITE 1 AC4 7 ARG A 336 THR A 338 GLY A 339 THR A 340 SITE 2 AC4 7 ARG A 341 GLU A 384 TYR A 412 CRYST1 97.891 97.891 189.215 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010215 0.005898 0.000000 0.00000 SCALE2 0.000000 0.011796 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005285 0.00000