HEADER TRANSCRIPTION 08-OCT-09 3K69 TITLE CRYSTAL STRUCTURE OF A PUTATIVE TRANSCRIPTIONAL REGULATOR (LP_0360) TITLE 2 FROM LACTOBACILLUS PLANTARUM AT 1.95 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE TRANSCRIPTION REGULATOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS PLANTARUM; SOURCE 3 ORGANISM_TAXID: 1590; SOURCE 4 GENE: LP_0360; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PUTATIVE TRANSCRIPTIONAL REGULATOR, STRUCTURAL GENOMICS, JOINT CENTER KEYWDS 2 FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 3 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 01-FEB-23 3K69 1 REMARK SEQADV REVDAT 5 17-JUL-19 3K69 1 REMARK LINK REVDAT 4 01-NOV-17 3K69 1 REMARK REVDAT 3 13-JUL-11 3K69 1 VERSN REVDAT 2 28-JUL-10 3K69 1 HEADER TITLE KEYWDS REVDAT 1 03-NOV-09 3K69 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE TRANSCRIPTIONAL REGULATOR JRNL TITL 2 (NP_784167.1) FROM LACTOBACILLUS PLANTARUM AT 1.95 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 12306 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 599 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 673 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 28 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1170 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 158 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 22.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.43000 REMARK 3 B22 (A**2) : 0.84000 REMARK 3 B33 (A**2) : -0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.93000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.159 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.148 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.104 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.888 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1217 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 763 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1654 ; 1.393 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1874 ; 0.998 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 152 ; 6.439 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 55 ;41.856 ;24.545 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 193 ;11.868 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;12.786 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 193 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1358 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 238 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 255 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 718 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 591 ; 0.178 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 589 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 118 ; 0.163 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 16 ; 0.229 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 40 ; 0.286 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.191 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 841 ; 2.270 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 307 ; 0.534 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1225 ; 3.223 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 491 ; 5.012 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 429 ; 6.078 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 160 REMARK 3 ORIGIN FOR THE GROUP (A): 10.3003 4.2814 7.1462 REMARK 3 T TENSOR REMARK 3 T11: -0.0301 T22: -0.0729 REMARK 3 T33: -0.0253 T12: 0.0120 REMARK 3 T13: 0.0109 T23: -0.0126 REMARK 3 L TENSOR REMARK 3 L11: 2.0898 L22: 0.1709 REMARK 3 L33: 1.0963 L12: 0.3081 REMARK 3 L13: 0.9702 L23: 0.0291 REMARK 3 S TENSOR REMARK 3 S11: -0.0095 S12: -0.0798 S13: 0.1936 REMARK 3 S21: -0.0013 S22: -0.0153 S23: 0.0118 REMARK 3 S31: -0.0274 S32: -0.0021 S33: 0.0248 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: (1). HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. (2). ATOM RECORD CONTAINS RESIDUAL B FACTORS REMARK 3 ONLY. (3). A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. (4). RAMACHANDRAN OUTLIER OF RESIDUE GLY59 REMARK 3 IS SUPPORTED BY ELECTRON DENSITY. (5). RESIDUES 102-105 WERE NOT REMARK 3 MODELED DUE TO POOR ELECTRON DENSITY IN THIS REGION. (6). REMARK 3 DIMETHYL SULFOXIDE (DMS) MOLECULES FROM THE CRYSTALLIZATION REMARK 3 BUFFERS WERE MODELED INTO THE STRUCTURE. REMARK 4 REMARK 4 3K69 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055598. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97959,0.97886 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12340 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 28.307 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : 0.09300 REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.69100 REMARK 200 R SYM FOR SHELL (I) : 0.69100 REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2000M NA2HPO4, 20.0000% PEG-3350, NO REMARK 280 BUFFER PH 4.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 57.08650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.02700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 57.08650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.02700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 GLY A 2 REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 ASN A 5 REMARK 465 THR A 102 REMARK 465 ASP A 103 REMARK 465 GLU A 104 REMARK 465 GLN A 105 REMARK 465 SER A 161 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 7 NZ REMARK 470 ARG A 31 CZ NH1 NH2 REMARK 470 ARG A 94 CD NE CZ NH1 NH2 REMARK 470 LYS A 101 CG CD CE NZ REMARK 470 ASP A 107 CG OD1 OD2 REMARK 470 GLU A 160 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 64 13.71 57.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 162 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 163 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 396747 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT (RESIDUES 1-161) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE FOLLOWED BY THE TARGET SEQUENCE. DBREF 3K69 A 1 161 UNP Q88ZG1 Q88ZG1_LACPL 1 161 SEQADV 3K69 GLY A 0 UNP Q88ZG1 EXPRESSION TAG SEQRES 1 A 162 GLY MSE GLY GLY SER ASN MSE LYS LEU ASP PHE SER VAL SEQRES 2 A 162 ALA VAL HIS SER ILE LEU TYR LEU ASP ALA HIS ARG ASP SEQRES 3 A 162 SER LYS VAL ALA SER ARG GLU LEU ALA GLN SER LEU HIS SEQRES 4 A 162 LEU ASN PRO VAL MSE ILE ARG ASN ILE LEU SER VAL LEU SEQRES 5 A 162 HIS LYS HIS GLY TYR LEU THR GLY THR VAL GLY LYS ASN SEQRES 6 A 162 GLY GLY TYR GLN LEU ASP LEU ALA LEU ALA ASP MSE ASN SEQRES 7 A 162 LEU GLY ASP LEU TYR ASP LEU THR ILE PRO PRO THR ILE SEQRES 8 A 162 SER TYR ALA ARG PHE ILE THR GLY PRO SER LYS THR ASP SEQRES 9 A 162 GLU GLN ALA ASP GLN SER PRO ILE ALA ALA ASN ILE SER SEQRES 10 A 162 GLU THR LEU THR ASP LEU PHE THR VAL ALA ASP ARG GLN SEQRES 11 A 162 TYR ARG ALA TYR TYR HIS GLN PHE THR MSE ALA ASP LEU SEQRES 12 A 162 GLN ALA ASP LEU ASN HIS HIS GLY THR PHE LEU GLN HIS SEQRES 13 A 162 GLU GLN ASP SER GLU SER MODRES 3K69 MSE A 6 MET SELENOMETHIONINE MODRES 3K69 MSE A 43 MET SELENOMETHIONINE MODRES 3K69 MSE A 76 MET SELENOMETHIONINE MODRES 3K69 MSE A 139 MET SELENOMETHIONINE HET MSE A 6 16 HET MSE A 43 8 HET MSE A 76 8 HET MSE A 139 8 HET DMS A 162 4 HET DMS A 163 4 HETNAM MSE SELENOMETHIONINE HETNAM DMS DIMETHYL SULFOXIDE FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 DMS 2(C2 H6 O S) FORMUL 4 HOH *158(H2 O) HELIX 1 1 LEU A 8 ALA A 22 1 15 HELIX 2 2 ALA A 29 HIS A 38 1 10 HELIX 3 3 ASN A 40 MSE A 43 5 4 HELIX 4 4 ILE A 44 HIS A 54 1 11 HELIX 5 5 ALA A 72 MSE A 76 5 5 HELIX 6 6 ASN A 77 ILE A 86 1 10 HELIX 7 7 TYR A 92 ILE A 96 5 5 HELIX 8 8 SER A 109 GLN A 136 1 28 HELIX 9 9 THR A 138 HIS A 148 1 11 HELIX 10 10 GLY A 150 GLU A 160 1 11 SHEET 1 A 2 THR A 58 THR A 60 0 SHEET 2 A 2 GLY A 66 GLN A 68 -1 O GLN A 68 N THR A 58 LINK C AMSE A 6 N LYS A 7 1555 1555 1.33 LINK C BMSE A 6 N LYS A 7 1555 1555 1.33 LINK C VAL A 42 N MSE A 43 1555 1555 1.33 LINK C MSE A 43 N ILE A 44 1555 1555 1.33 LINK C ASP A 75 N MSE A 76 1555 1555 1.33 LINK C MSE A 76 N ASN A 77 1555 1555 1.33 LINK C THR A 138 N MSE A 139 1555 1555 1.33 LINK C MSE A 139 N ALA A 140 1555 1555 1.35 SITE 1 AC1 7 GLY A 59 THR A 60 GLY A 66 TYR A 67 SITE 2 AC1 7 LEU A 71 HOH A 205 HOH A 299 SITE 1 AC2 4 LYS A 7 TYR A 82 PHE A 123 TYR A 130 CRYST1 114.173 38.054 42.275 90.00 110.73 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008759 0.000000 0.003315 0.00000 SCALE2 0.000000 0.026278 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025293 0.00000 HETATM 1 N AMSE A 6 7.137 14.394 4.296 0.50 46.26 N HETATM 2 N BMSE A 6 6.554 14.432 4.330 0.50 42.35 N HETATM 3 CA AMSE A 6 6.811 13.641 5.547 0.50 45.98 C HETATM 4 CA BMSE A 6 6.811 13.639 5.572 0.50 40.86 C HETATM 5 C AMSE A 6 6.950 12.138 5.299 0.50 40.08 C HETATM 6 C BMSE A 6 6.966 12.139 5.291 0.50 37.47 C HETATM 7 O AMSE A 6 7.503 11.416 6.120 0.50 39.35 O HETATM 8 O BMSE A 6 7.546 11.417 6.092 0.50 36.39 O HETATM 9 CB AMSE A 6 5.401 13.982 6.038 0.50 45.98 C HETATM 10 CB BMSE A 6 5.695 13.871 6.583 0.50 43.07 C HETATM 11 CG AMSE A 6 5.020 13.317 7.370 0.50 48.18 C HETATM 12 CG BMSE A 6 5.835 15.167 7.377 0.50 51.00 C HETATM 13 SE AMSE A 6 3.509 14.175 8.324 0.37 59.17 SE HETATM 14 SE BMSE A 6 6.831 14.902 9.049 0.38 74.31 SE HETATM 15 CE AMSE A 6 2.275 14.453 6.828 0.50 54.65 C HETATM 16 CE BMSE A 6 5.533 13.819 10.039 0.50 61.12 C