HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 09-OCT-09 3K6O TITLE CRYSTAL STRUCTURE OF PROTEIN OF UNKNOWN FUNCTION DUF1344 TITLE 2 (YP_001299214.1) FROM BACTEROIDES VULGATUS ATCC 8482 AT 2.00 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN DUF1344; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES VULGATUS ATCC 8482; SOURCE 3 ORGANISM_TAXID: 435590; SOURCE 4 STRAIN: ATCC 8482 / DSM 1447 / NCTC 11154; SOURCE 5 GENE: BVU_1918; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PROTEIN OF UNKNOWN FUNCTION DUF1344, STRUCTURAL GENOMICS, JOINT KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 PSI-2, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 3K6O 1 REMARK SEQADV REVDAT 4 17-JUL-19 3K6O 1 REMARK LINK REVDAT 3 01-NOV-17 3K6O 1 REMARK REVDAT 2 13-JUL-11 3K6O 1 VERSN REVDAT 1 03-NOV-09 3K6O 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PROTEIN OF UNKNOWN FUNCTION DUF1344 JRNL TITL 2 (YP_001299214.1) FROM BACTEROIDES VULGATUS ATCC 8482 AT 2.00 JRNL TITL 3 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 42806 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2188 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3046 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.2760 REMARK 3 BIN FREE R VALUE SET COUNT : 136 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3360 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 71 REMARK 3 SOLVENT ATOMS : 306 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 33.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.40000 REMARK 3 B22 (A**2) : -0.54000 REMARK 3 B33 (A**2) : 0.95000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.40000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.137 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.129 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.366 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3527 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2375 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4793 ; 1.543 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5839 ; 0.851 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 428 ; 6.993 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;36.587 ;25.542 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 572 ;13.125 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;22.697 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 514 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3872 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 654 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2124 ; 0.798 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 844 ; 0.188 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3458 ; 1.460 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1403 ; 2.397 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1331 ; 3.640 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 34 A 244 6 REMARK 3 1 B 34 B 244 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 2834 ; 0.190 ; 5.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 2834 ; 2.080 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 34 A 244 REMARK 3 ORIGIN FOR THE GROUP (A): 25.6260 -3.6080 10.4600 REMARK 3 T TENSOR REMARK 3 T11: 0.0584 T22: 0.1582 REMARK 3 T33: 0.0672 T12: 0.0224 REMARK 3 T13: 0.0148 T23: 0.0368 REMARK 3 L TENSOR REMARK 3 L11: 3.3917 L22: 0.9138 REMARK 3 L33: 0.6640 L12: -0.8818 REMARK 3 L13: -0.6617 L23: 0.3077 REMARK 3 S TENSOR REMARK 3 S11: -0.0687 S12: -0.5498 S13: -0.0734 REMARK 3 S21: 0.1249 S22: 0.0910 S23: -0.1257 REMARK 3 S31: 0.0668 S32: 0.1470 S33: -0.0223 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 34 B 244 REMARK 3 ORIGIN FOR THE GROUP (A): -10.7120 -3.8200 25.6900 REMARK 3 T TENSOR REMARK 3 T11: 0.0770 T22: 0.1594 REMARK 3 T33: 0.0876 T12: -0.0323 REMARK 3 T13: 0.0642 T23: 0.0335 REMARK 3 L TENSOR REMARK 3 L11: 1.0956 L22: 0.8260 REMARK 3 L33: 3.8661 L12: -0.4592 REMARK 3 L13: 1.3033 L23: -0.8272 REMARK 3 S TENSOR REMARK 3 S11: 0.0310 S12: -0.2265 S13: -0.1267 REMARK 3 S21: 0.0893 S22: 0.1213 S23: 0.1710 REMARK 3 S31: 0.0402 S32: -0.5391 S33: -0.1523 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS REMARK 3 ONLY. 3. SULFATE (SO4) IONS AND PEG-200 (PG4) FRAGMENTS FROM THE REMARK 3 CRYSTALLIZATION/CRYOPROTECTION SOLUTION ARE MODELED. REMARK 4 REMARK 4 3K6O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055613. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.93 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97922,0.97936 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.25 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42806 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 28.194 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : 0.06100 REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.47400 REMARK 200 R SYM FOR SHELL (I) : 0.47400 REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8600M AMMONIUM SULFATE, 0.1M CITRIC REMARK 280 ACID PH 3.93, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 78.83500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.62250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 78.83500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.62250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A REMARK 300 MONOMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 SER A 22 REMARK 465 SER A 23 REMARK 465 CYS A 24 REMARK 465 GLY A 25 REMARK 465 ASN A 26 REMARK 465 ASP A 27 REMARK 465 GLU A 28 REMARK 465 SER A 29 REMARK 465 ASP A 30 REMARK 465 PRO A 31 REMARK 465 ASP A 32 REMARK 465 SER A 33 REMARK 465 GLY B 0 REMARK 465 SER B 22 REMARK 465 SER B 23 REMARK 465 CYS B 24 REMARK 465 GLY B 25 REMARK 465 ASN B 26 REMARK 465 ASP B 27 REMARK 465 GLU B 28 REMARK 465 SER B 29 REMARK 465 ASP B 30 REMARK 465 PRO B 31 REMARK 465 ASP B 32 REMARK 465 SER B 33 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 166 CG CD CE NZ REMARK 470 ASP A 215 CG OD1 OD2 REMARK 470 GLN B 150 CG CD OE1 NE2 REMARK 470 LYS B 166 CG CD CE NZ REMARK 470 LYS B 205 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 196 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 LEU B 174 CB - CG - CD1 ANGL. DEV. = -11.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 70 -14.99 -143.09 REMARK 500 ASN A 123 51.95 -160.66 REMARK 500 SER A 148 59.65 -153.42 REMARK 500 ASP A 195 -112.65 47.51 REMARK 500 TYR B 70 -17.99 -142.35 REMARK 500 ASN B 123 53.97 -154.37 REMARK 500 SER B 148 67.62 -152.46 REMARK 500 ASP B 195 -115.08 51.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 166 ASP A 167 -149.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG4 A 1 REMARK 610 PG4 A 4 REMARK 610 PG4 A 5 REMARK 610 PG4 B 3 REMARK 610 PG4 B 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 8 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 B 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 B 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 10 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 393241 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT (RESIDUES 22-244) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3K6O A 22 244 UNP A6L1M8 A6L1M8_BACV8 22 244 DBREF 3K6O B 22 244 UNP A6L1M8 A6L1M8_BACV8 22 244 SEQADV 3K6O GLY A 0 UNP A6L1M8 EXPRESSION TAG SEQADV 3K6O GLY B 0 UNP A6L1M8 EXPRESSION TAG SEQRES 1 A 224 GLY SER SER CYS GLY ASN ASP GLU SER ASP PRO ASP SER SEQRES 2 A 224 THR VAL THR ILE ALA MSE ALA THR VAL GLU LYS GLN PRO SEQRES 3 A 224 GLN TYR ASP ALA PRO TYR LEU VAL LEU ASP ASN GLY GLU SEQRES 4 A 224 LYS LEU TRP VAL VAL GLN HIS ILE VAL PRO TYR ARG ASP SEQRES 5 A 224 LEU LYS ALA GLY GLU ARG ILE PHE GLY ASN TYR SER PHE SEQRES 6 A 224 LEU GLU ALA GLY GLU SER GLY PHE ALA TYR ASN ILE ARG SEQRES 7 A 224 LEU ASN ASP TYR THR LEU VAL PRO VAL GLN LYS ILE ILE SEQRES 8 A 224 GLY LEU ASN PRO ASP ASN MSE ASP SER ILE GLY ASN MSE SEQRES 9 A 224 LYS VAL GLN ILE LYS ASP MSE TRP PRO SER ASP ASP TYR SEQRES 10 A 224 LEU ASN VAL ARG PHE MSE LEU ASN PHE PRO SER PRO GLN SEQRES 11 A 224 LYS PRO ILE LEU ASN LEU VAL VAL ASN GLU MSE ILE PRO SEQRES 12 A 224 TRP THR LYS ASP GLY TYR ALA HIS LEU GLU LEU ARG TYR SEQRES 13 A 224 ASN ASN ASN GLY SER GLN GLY ARG LEU VAL PRO GLY MSE SEQRES 14 A 224 VAL SER PHE LYS LEU ASP ASP TYR SER PRO GLU ASN SER SEQRES 15 A 224 GLU LEU LYS GLY ILE LYS VAL LEU VAL ASN PRO VAL ASP SEQRES 16 A 224 GLY GLU GLU LYS THR TYR ILE PHE SER TYR PRO LEU THR SEQRES 17 A 224 GLY GLU ASP VAL PRO GLY PHE ASN PRO LEU ASP LEU ALA SEQRES 18 A 224 GLU LEU LYS SEQRES 1 B 224 GLY SER SER CYS GLY ASN ASP GLU SER ASP PRO ASP SER SEQRES 2 B 224 THR VAL THR ILE ALA MSE ALA THR VAL GLU LYS GLN PRO SEQRES 3 B 224 GLN TYR ASP ALA PRO TYR LEU VAL LEU ASP ASN GLY GLU SEQRES 4 B 224 LYS LEU TRP VAL VAL GLN HIS ILE VAL PRO TYR ARG ASP SEQRES 5 B 224 LEU LYS ALA GLY GLU ARG ILE PHE GLY ASN TYR SER PHE SEQRES 6 B 224 LEU GLU ALA GLY GLU SER GLY PHE ALA TYR ASN ILE ARG SEQRES 7 B 224 LEU ASN ASP TYR THR LEU VAL PRO VAL GLN LYS ILE ILE SEQRES 8 B 224 GLY LEU ASN PRO ASP ASN MSE ASP SER ILE GLY ASN MSE SEQRES 9 B 224 LYS VAL GLN ILE LYS ASP MSE TRP PRO SER ASP ASP TYR SEQRES 10 B 224 LEU ASN VAL ARG PHE MSE LEU ASN PHE PRO SER PRO GLN SEQRES 11 B 224 LYS PRO ILE LEU ASN LEU VAL VAL ASN GLU MSE ILE PRO SEQRES 12 B 224 TRP THR LYS ASP GLY TYR ALA HIS LEU GLU LEU ARG TYR SEQRES 13 B 224 ASN ASN ASN GLY SER GLN GLY ARG LEU VAL PRO GLY MSE SEQRES 14 B 224 VAL SER PHE LYS LEU ASP ASP TYR SER PRO GLU ASN SER SEQRES 15 B 224 GLU LEU LYS GLY ILE LYS VAL LEU VAL ASN PRO VAL ASP SEQRES 16 B 224 GLY GLU GLU LYS THR TYR ILE PHE SER TYR PRO LEU THR SEQRES 17 B 224 GLY GLU ASP VAL PRO GLY PHE ASN PRO LEU ASP LEU ALA SEQRES 18 B 224 GLU LEU LYS MODRES 3K6O MSE A 39 MET SELENOMETHIONINE MODRES 3K6O MSE A 118 MET SELENOMETHIONINE MODRES 3K6O MSE A 124 MET SELENOMETHIONINE MODRES 3K6O MSE A 131 MET SELENOMETHIONINE MODRES 3K6O MSE A 143 MET SELENOMETHIONINE MODRES 3K6O MSE A 161 MET SELENOMETHIONINE MODRES 3K6O MSE A 189 MET SELENOMETHIONINE MODRES 3K6O MSE B 39 MET SELENOMETHIONINE MODRES 3K6O MSE B 118 MET SELENOMETHIONINE MODRES 3K6O MSE B 124 MET SELENOMETHIONINE MODRES 3K6O MSE B 131 MET SELENOMETHIONINE MODRES 3K6O MSE B 143 MET SELENOMETHIONINE MODRES 3K6O MSE B 161 MET SELENOMETHIONINE MODRES 3K6O MSE B 189 MET SELENOMETHIONINE HET MSE A 39 8 HET MSE A 118 8 HET MSE A 124 8 HET MSE A 131 8 HET MSE A 143 8 HET MSE A 161 8 HET MSE A 189 8 HET MSE B 39 8 HET MSE B 118 8 HET MSE B 124 8 HET MSE B 131 8 HET MSE B 143 8 HET MSE B 161 8 HET MSE B 189 8 HET PG4 A 1 10 HET PG4 A 4 7 HET PG4 A 5 7 HET SO4 A 8 5 HET SO4 A 9 5 HET PG4 B 2 13 HET PG4 B 3 7 HET PG4 B 6 7 HET SO4 B 7 5 HET SO4 B 10 5 HETNAM MSE SELENOMETHIONINE HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM SO4 SULFATE ION FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 3 PG4 6(C8 H18 O5) FORMUL 6 SO4 4(O4 S 2-) FORMUL 13 HOH *306(H2 O) HELIX 1 1 ASN A 117 GLY A 122 1 6 HELIX 2 2 ASP A 195 SER A 198 5 4 HELIX 3 3 ASN A 236 GLU A 242 1 7 HELIX 4 4 ASN B 117 GLY B 122 1 6 HELIX 5 5 ASP B 195 SER B 198 5 4 HELIX 6 6 ASN B 236 GLU B 242 1 7 SHEET 1 A 6 THR A 36 GLU A 43 0 SHEET 2 A 6 TYR A 52 VAL A 54 -1 O TYR A 52 N GLU A 43 SHEET 3 A 6 LYS A 60 HIS A 66 -1 O LEU A 61 N LEU A 53 SHEET 4 A 6 TYR A 95 VAL A 105 1 O ILE A 97 N TRP A 62 SHEET 5 A 6 ARG A 78 ALA A 88 -1 N ARG A 78 O VAL A 105 SHEET 6 A 6 THR A 36 GLU A 43 -1 N THR A 36 O TYR A 83 SHEET 1 B 4 VAL A 107 LYS A 109 0 SHEET 2 B 4 LEU A 185 LYS A 193 1 O SER A 191 N GLN A 108 SHEET 3 B 4 TYR A 137 ASN A 145 -1 N PHE A 142 O GLY A 188 SHEET 4 B 4 GLN A 127 PRO A 133 -1 N TRP A 132 O ASN A 139 SHEET 1 C 5 ILE A 111 LEU A 113 0 SHEET 2 C 5 ILE A 153 ASN A 159 1 O VAL A 158 N LEU A 113 SHEET 3 C 5 TYR A 169 ASN A 177 -1 O GLU A 173 N VAL A 157 SHEET 4 C 5 GLY A 206 VAL A 211 1 O LEU A 210 N LEU A 174 SHEET 5 C 5 LYS A 219 SER A 224 -1 O TYR A 221 N VAL A 209 SHEET 1 D 6 THR B 36 GLU B 43 0 SHEET 2 D 6 TYR B 52 LEU B 55 -1 O VAL B 54 N THR B 41 SHEET 3 D 6 LYS B 60 HIS B 66 -1 O LEU B 61 N LEU B 53 SHEET 4 D 6 TYR B 95 VAL B 105 1 O ILE B 97 N TRP B 62 SHEET 5 D 6 ARG B 78 ALA B 88 -1 N ASN B 82 O ASP B 101 SHEET 6 D 6 THR B 36 GLU B 43 -1 N ALA B 38 O GLY B 81 SHEET 1 E 4 VAL B 107 LYS B 109 0 SHEET 2 E 4 LEU B 185 LYS B 193 1 O LYS B 193 N GLN B 108 SHEET 3 E 4 TYR B 137 ASN B 145 -1 N LEU B 144 O VAL B 186 SHEET 4 E 4 GLN B 127 PRO B 133 -1 N TRP B 132 O ASN B 139 SHEET 1 F 5 ILE B 111 LEU B 113 0 SHEET 2 F 5 ILE B 153 ASN B 159 1 O VAL B 158 N LEU B 113 SHEET 3 F 5 TYR B 169 ASN B 177 -1 O GLU B 173 N VAL B 157 SHEET 4 F 5 GLY B 206 VAL B 211 1 O LYS B 208 N LEU B 172 SHEET 5 F 5 LYS B 219 SER B 224 -1 O TYR B 221 N VAL B 209 LINK C ALA A 38 N MSE A 39 1555 1555 1.33 LINK C MSE A 39 N ALA A 40 1555 1555 1.33 LINK C ASN A 117 N MSE A 118 1555 1555 1.33 LINK C MSE A 118 N ASP A 119 1555 1555 1.32 LINK C ASN A 123 N MSE A 124 1555 1555 1.32 LINK C MSE A 124 N LYS A 125 1555 1555 1.33 LINK C ASP A 130 N MSE A 131 1555 1555 1.33 LINK C MSE A 131 N TRP A 132 1555 1555 1.33 LINK C PHE A 142 N MSE A 143 1555 1555 1.33 LINK C MSE A 143 N LEU A 144 1555 1555 1.32 LINK C GLU A 160 N MSE A 161 1555 1555 1.34 LINK C MSE A 161 N ILE A 162 1555 1555 1.33 LINK C GLY A 188 N MSE A 189 1555 1555 1.33 LINK C MSE A 189 N VAL A 190 1555 1555 1.34 LINK C ALA B 38 N MSE B 39 1555 1555 1.33 LINK C MSE B 39 N ALA B 40 1555 1555 1.32 LINK C ASN B 117 N MSE B 118 1555 1555 1.32 LINK C MSE B 118 N ASP B 119 1555 1555 1.33 LINK C ASN B 123 N MSE B 124 1555 1555 1.32 LINK C MSE B 124 N LYS B 125 1555 1555 1.33 LINK C ASP B 130 N MSE B 131 1555 1555 1.33 LINK C MSE B 131 N TRP B 132 1555 1555 1.33 LINK C PHE B 142 N MSE B 143 1555 1555 1.33 LINK C MSE B 143 N LEU B 144 1555 1555 1.33 LINK C GLU B 160 N MSE B 161 1555 1555 1.33 LINK C MSE B 161 N ILE B 162 1555 1555 1.33 LINK C GLY B 188 N MSE B 189 1555 1555 1.33 LINK C MSE B 189 N VAL B 190 1555 1555 1.32 CISPEP 1 SER A 148 PRO A 149 0 -4.52 CISPEP 2 TYR A 225 PRO A 226 0 2.98 CISPEP 3 SER B 148 PRO B 149 0 -5.24 CISPEP 4 TYR B 225 PRO B 226 0 4.30 SITE 1 AC1 6 GLU A 160 ILE A 162 TRP A 164 PRO B 115 SITE 2 AC1 6 GLU B 160 TRP B 164 SITE 1 AC2 4 ASN A 123 ARG A 175 HOH A 328 HOH B 268 SITE 1 AC3 6 VAL A 64 GLN A 65 GLU A 87 PRO A 199 SITE 2 AC3 6 GLU A 200 SER A 202 SITE 1 AC4 4 PRO A 69 TYR A 70 ARG A 71 ASP A 72 SITE 1 AC5 2 HIS A 66 ARG A 71 SITE 1 AC6 7 ASN A 201 SER A 202 GLU A 203 ASN B 123 SITE 2 AC6 7 ARG B 175 GLU B 218 HOH B 315 SITE 1 AC7 6 ASN A 159 MSE A 161 ASP B 196 TYR B 197 SITE 2 AC7 6 ASN B 201 HOH B 253 SITE 1 AC8 5 GLN B 65 GLU B 87 GLU B 200 SER B 202 SITE 2 AC8 5 HOH B 302 SITE 1 AC9 4 PRO B 69 TYR B 70 ARG B 71 ASP B 72 SITE 1 BC1 4 LYS B 129 ARG B 141 ASP B 239 GLU B 242 CRYST1 157.670 51.245 112.783 90.00 135.03 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006342 0.000000 0.006348 0.00000 SCALE2 0.000000 0.019514 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012545 0.00000