HEADER HYDROLASE 13-OCT-09 3K7L TITLE STRUCTURES OF TWO ELAPID SNAKE VENOM METALLOPROTEASES WITH DISTINCT TITLE 2 ACTIVITIES HIGHLIGHT THE DISULFIDE PATTERNS IN THE D DOMAIN OF TITLE 3 ADAMALYSIN FAMILY PROTEINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATRAGIN; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NAJA ATRA; SOURCE 3 ORGANISM_COMMON: CHINESE COBRA; SOURCE 4 ORGANISM_TAXID: 8656 KEYWDS SVMP, METALLOPROTEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.H.GUAN,W.G.WU,C.J.CHEN REVDAT 3 01-NOV-23 3K7L 1 HETSYN REVDAT 2 29-JUL-20 3K7L 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE REVDAT 1 02-MAR-10 3K7L 0 JRNL AUTH H.H.GUAN,K.S.GOH,F.DAVAMANI,P.L.WU,Y.W.HUANG,J.JEYAKANTHAN, JRNL AUTH 2 W.G.WU,C.J.CHEN JRNL TITL STRUCTURES OF TWO ELAPID SNAKE VENOM METALLOPROTEASES WITH JRNL TITL 2 DISTINCT ACTIVITIES HIGHLIGHT THE DISULFIDE PATTERNS IN THE JRNL TITL 3 D DOMAIN OF ADAMALYSIN FAMILY PROTEINS JRNL REF J.STRUCT.BIOL. V. 169 294 2010 JRNL REFN ISSN 1047-8477 JRNL PMID 19932752 JRNL DOI 10.1016/J.JSB.2009.11.009 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.4 REMARK 3 NUMBER OF REFLECTIONS : 17673 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1759 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3207 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 75 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.033 REMARK 3 BOND ANGLES (DEGREES) : 2.750 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 42.85 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : NAG.PARAM REMARK 3 PARAMETER FILE 4 : WATER.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3K7L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055646. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-06; 09-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 110; 110 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : NSRRC; SPRING-8 REMARK 200 BEAMLINE : BL13B1; BL12B2 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1; 1 REMARK 200 MONOCHROMATOR : SI 111; SI 111 REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; ADSC QUANTUM REMARK 200 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18724 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.480 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 19.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04800 REMARK 200 FOR THE DATA SET : 43.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.26800 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2ERO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7% PEG6000, 0.1M SODIUM CITRATE, PH 5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.11750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.82500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.82500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 93.17625 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.82500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.82500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 31.05875 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.82500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.82500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 93.17625 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.82500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.82500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 31.05875 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 62.11750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 361 REMARK 465 LYS A 362 REMARK 465 CYS A 363 REMARK 465 VAL A 364 REMARK 465 MET A 365 REMARK 465 SER A 366 REMARK 465 THR A 367 REMARK 465 ARG A 368 REMARK 465 ARG A 369 REMARK 465 THR A 370 REMARK 465 LYS A 371 REMARK 465 PRO A 372 REMARK 465 ALA A 373 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 359 C PHE A 360 1.74 REMARK 500 ND2 ASN A 436 C2 NAG A 1 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 196 CG GLU A 196 CD 0.104 REMARK 500 TYR A 374 CZ TYR A 374 CE2 0.086 REMARK 500 ARG A 390 CG ARG A 390 CD 0.167 REMARK 500 GLU A 452 CB GLU A 452 CG 0.159 REMARK 500 GLU A 452 CG GLU A 452 CD 0.101 REMARK 500 ARG A 463 CB ARG A 463 CG 0.171 REMARK 500 LEU A 475 CG LEU A 475 CD2 0.226 REMARK 500 PHE A 491 CZ PHE A 491 CE2 0.170 REMARK 500 CYS A 498 CB CYS A 498 SG 0.129 REMARK 500 ASN A 571 CB ASN A 571 CG 0.155 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 293 CB - CA - C ANGL. DEV. = 13.8 DEGREES REMARK 500 ASP A 301 CB - CG - OD1 ANGL. DEV. = -6.8 DEGREES REMARK 500 ARG A 331 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 331 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 LEU A 347 CB - CG - CD1 ANGL. DEV. = -15.3 DEGREES REMARK 500 ASP A 352 N - CA - C ANGL. DEV. = -18.4 DEGREES REMARK 500 ARG A 353 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 353 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 GLY A 359 N - CA - C ANGL. DEV. = 19.2 DEGREES REMARK 500 PHE A 360 C - N - CA ANGL. DEV. = -24.3 DEGREES REMARK 500 ARG A 392 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 467 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 467 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP A 472 CB - CG - OD1 ANGL. DEV. = 8.6 DEGREES REMARK 500 LEU A 496 CB - CG - CD1 ANGL. DEV. = -10.6 DEGREES REMARK 500 PRO A 554 C - N - CA ANGL. DEV. = 11.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 221 30.77 -96.53 REMARK 500 ASN A 260 -71.54 -108.01 REMARK 500 LYS A 289 107.44 -163.93 REMARK 500 ASN A 293 149.64 -171.63 REMARK 500 PRO A 306 119.01 -25.33 REMARK 500 CYS A 316 -10.07 78.13 REMARK 500 ASP A 352 20.69 -147.65 REMARK 500 PHE A 355 -178.13 62.53 REMARK 500 CYS A 358 134.25 126.70 REMARK 500 GLN A 375 -166.15 -105.94 REMARK 500 ARG A 392 68.68 34.99 REMARK 500 TYR A 414 13.49 56.29 REMARK 500 GLU A 445 -2.32 67.00 REMARK 500 CYS A 448 164.04 178.78 REMARK 500 ASP A 449 -75.79 -129.09 REMARK 500 CYS A 453 44.07 -100.49 REMARK 500 ARG A 463 -8.34 67.93 REMARK 500 ASP A 471 173.76 175.59 REMARK 500 ASN A 507 46.18 35.59 REMARK 500 TYR A 549 8.98 87.24 REMARK 500 PRO A 554 157.07 -48.79 REMARK 500 ARG A 569 -162.13 -105.75 REMARK 500 ASN A 571 -57.74 68.76 REMARK 500 ASN A 603 50.62 36.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 353 GLY A 354 -148.20 REMARK 500 THR A 357 CYS A 358 102.44 REMARK 500 CYS A 358 GLY A 359 -129.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 208 OE1 REMARK 620 2 ASP A 292 OD1 80.9 REMARK 620 3 ASP A 292 OD2 82.3 46.1 REMARK 620 4 CYS A 395 O 161.9 101.3 112.3 REMARK 620 5 ASN A 398 OD1 107.5 155.4 155.7 63.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 703 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 410 O REMARK 620 2 ASN A 413 ND2 83.2 REMARK 620 3 PHE A 415 O 164.7 81.8 REMARK 620 4 GLU A 417 OE1 84.6 98.4 94.9 REMARK 620 5 GLU A 420 OE1 123.4 153.2 71.8 88.7 REMARK 620 6 GLU A 420 OE2 75.8 157.1 119.5 88.7 47.9 REMARK 620 7 ASP A 423 OD2 83.8 84.9 97.6 167.4 93.7 83.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 702 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 474 OD2 REMARK 620 2 LEU A 475 O 88.5 REMARK 620 3 GLU A 477 OE1 154.8 89.5 REMARK 620 4 GLU A 477 OE2 151.5 73.2 49.4 REMARK 620 5 ASP A 489 OD2 97.8 173.4 85.5 100.2 REMARK 620 6 VAL A 490 O 85.7 83.9 119.1 71.0 94.7 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3K7N RELATED DB: PDB DBREF 3K7L A 192 613 PDB 3K7L 3K7L 192 613 SEQRES 1 A 422 THR ASN THR PRO GLU GLN ASP ARG TYR LEU GLN ALA LYS SEQRES 2 A 422 LYS TYR ILE GLU PHE TYR VAL VAL VAL ASP ASN ILE MET SEQRES 3 A 422 TYR ARG HIS TYR LYS ARG ASP GLN PRO VAL ILE LYS ARG SEQRES 4 A 422 LYS VAL TYR GLU MET ILE ASN THR MET ASN MET ILE TYR SEQRES 5 A 422 ARG ARG LEU ASN PHE HIS ILE ALA LEU ILE GLY LEU GLU SEQRES 6 A 422 ILE TRP SER ASN ILE ASN GLU ILE ASN VAL GLN SER ASP SEQRES 7 A 422 VAL ARG ALA THR LEU ASN LEU PHE GLY GLU TRP ARG GLU SEQRES 8 A 422 LYS LYS LEU LEU PRO ARG LYS ARG ASN ASP ASN ALA GLN SEQRES 9 A 422 LEU LEU THR GLY ILE ASP PHE ASN GLY THR PRO VAL GLY SEQRES 10 A 422 LEU ALA TYR ILE GLY SER ILE CYS ASN PRO LYS THR SER SEQRES 11 A 422 ALA ALA VAL VAL GLN ASP TYR SER SER ARG THR ARG MET SEQRES 12 A 422 VAL ALA ILE THR MET ALA HIS GLU MET GLY HIS ASN LEU SEQRES 13 A 422 GLY MET ASN HIS ASP ARG GLY PHE CYS THR CYS GLY PHE SEQRES 14 A 422 ASN LYS CYS VAL MET SER THR ARG ARG THR LYS PRO ALA SEQRES 15 A 422 TYR GLN PHE SER SER CYS SER VAL ARG GLU HIS GLN ARG SEQRES 16 A 422 TYR LEU LEU ARG ASP ARG PRO GLN CYS ILE LEU ASN LYS SEQRES 17 A 422 PRO LEU SER THR ASP ILE VAL SER PRO PRO ILE CYS GLY SEQRES 18 A 422 ASN TYR PHE VAL GLU VAL GLY GLU GLU CYS ASP CYS GLY SEQRES 19 A 422 SER PRO ALA ASP CYS GLN SER ALA CYS CYS ASN ALA THR SEQRES 20 A 422 THR CYS LYS LEU GLN HIS GLU ALA GLN CYS ASP SER GLU SEQRES 21 A 422 GLU CYS CYS GLU LYS CYS LYS PHE LYS GLY ALA ARG ALA SEQRES 22 A 422 GLU CYS ARG ALA ALA LYS ASP ASP CYS ASP LEU PRO GLU SEQRES 23 A 422 LEU CYS THR GLY GLN SER ALA GLU CYS PRO THR ASP VAL SEQRES 24 A 422 PHE GLN ARG ASN GLY LEU PRO CYS GLN ASN ASN GLN GLY SEQRES 25 A 422 TYR CYS TYR ASN GLY LYS CYS PRO ILE MET THR ASN GLN SEQRES 26 A 422 CYS ILE ALA LEU ARG GLY PRO GLY VAL LYS VAL SER ARG SEQRES 27 A 422 ASP SER CYS PHE THR LEU ASN GLN ARG THR ARG GLY CYS SEQRES 28 A 422 GLY LEU CYS ARG MET GLU TYR GLY ARG LYS ILE PRO CYS SEQRES 29 A 422 ALA ALA LYS ASP VAL LYS CYS GLY ARG LEU PHE CYS LYS SEQRES 30 A 422 ARG ARG ASN SER MET ILE CYS ASN CYS SER ILE SER PRO SEQRES 31 A 422 ARG ASP PRO ASN TYR GLY MET VAL GLU PRO GLY THR LYS SEQRES 32 A 422 CYS GLY ASP GLY MET VAL CYS SER ASN ARG GLN CYS VAL SEQRES 33 A 422 ASP VAL LYS THR ALA TYR MODRES 3K7L ASN A 436 ASN GLYCOSYLATION SITE HET NAG A 1 14 HET ZN A 704 1 HET CA A 701 1 HET CA A 702 1 HET CA A 703 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG C8 H15 N O6 FORMUL 3 ZN ZN 2+ FORMUL 4 CA 3(CA 2+) FORMUL 7 HOH *75(H2 O) HELIX 1 1 THR A 194 LEU A 201 1 8 HELIX 2 2 ASP A 214 TYR A 221 1 8 HELIX 3 3 ASP A 224 ARG A 244 1 21 HELIX 4 4 ASP A 269 LYS A 284 1 16 HELIX 5 5 LEU A 285 LYS A 289 5 5 HELIX 6 6 ARG A 331 LEU A 347 1 17 HELIX 7 7 SER A 377 ARG A 392 1 16 HELIX 8 8 GLN A 394 ASN A 398 5 5 HELIX 9 9 LEU A 401 ILE A 405 5 5 HELIX 10 10 ILE A 512 GLY A 522 1 11 HELIX 11 11 ARG A 529 ARG A 538 5 10 HELIX 12 12 ALA A 556 GLY A 563 5 8 HELIX 13 13 VAL A 609 TYR A 613 1 5 SHEET 1 A 5 PHE A 248 ILE A 257 0 SHEET 2 A 5 LYS A 205 VAL A 213 1 N ILE A 207 O ALA A 251 SHEET 3 A 5 ASN A 293 THR A 298 1 O LEU A 297 N VAL A 212 SHEET 4 A 5 ALA A 323 GLN A 326 1 O VAL A 325 N LEU A 296 SHEET 5 A 5 GLY A 308 ALA A 310 -1 N LEU A 309 O VAL A 324 SHEET 1 B 2 CYS A 435 ASN A 436 0 SHEET 2 B 2 LYS A 441 LEU A 442 -1 O LYS A 441 N ASN A 436 SHEET 1 C 2 CYS A 454 GLU A 455 0 SHEET 2 C 2 LYS A 458 PHE A 459 -1 O LYS A 458 N GLU A 455 SHEET 1 D 2 GLU A 465 ARG A 467 0 SHEET 2 D 2 GLU A 477 LEU A 478 -1 O GLU A 477 N CYS A 466 SHEET 1 E 2 PRO A 497 CYS A 498 0 SHEET 2 E 2 GLY A 503 TYR A 504 -1 O GLY A 503 N CYS A 498 SHEET 1 F 2 LYS A 526 VAL A 527 0 SHEET 2 F 2 CYS A 567 LYS A 568 -1 O LYS A 568 N LYS A 526 SHEET 1 G 2 ARG A 546 GLU A 548 0 SHEET 2 G 2 ARG A 551 ILE A 553 -1 O ILE A 553 N ARG A 546 SHEET 1 H 3 LYS A 594 GLY A 596 0 SHEET 2 H 3 MET A 599 SER A 602 -1 O MET A 599 N CYS A 595 SHEET 3 H 3 GLN A 605 ASP A 608 -1 O VAL A 607 N VAL A 600 SSBOND 1 CYS A 316 CYS A 395 1555 1555 1.98 SSBOND 2 CYS A 356 CYS A 379 1555 1555 2.11 SSBOND 3 CYS A 411 CYS A 440 1555 1555 2.03 SSBOND 4 CYS A 422 CYS A 435 1555 1555 2.07 SSBOND 5 CYS A 424 CYS A 430 1555 1555 2.11 SSBOND 6 CYS A 434 CYS A 457 1555 1555 2.10 SSBOND 7 CYS A 448 CYS A 454 1555 1555 2.05 SSBOND 8 CYS A 453 CYS A 479 1555 1555 2.06 SSBOND 9 CYS A 466 CYS A 486 1555 1555 2.11 SSBOND 10 CYS A 473 CYS A 505 1555 1555 2.04 SSBOND 11 CYS A 498 CYS A 510 1555 1555 2.04 SSBOND 12 CYS A 517 CYS A 567 1555 1555 2.10 SSBOND 13 CYS A 532 CYS A 575 1555 1555 2.07 SSBOND 14 CYS A 542 CYS A 577 1555 1555 1.99 SSBOND 15 CYS A 545 CYS A 555 1555 1555 2.01 SSBOND 16 CYS A 562 CYS A 601 1555 1555 1.98 SSBOND 17 CYS A 595 CYS A 606 1555 1555 2.14 LINK C1 NAG A 1 ND2 ASN A 436 1555 1555 1.43 LINK OE1 GLU A 208 CA CA A 701 1555 1555 2.33 LINK OD1 ASP A 292 CA CA A 701 1555 1555 2.72 LINK OD2 ASP A 292 CA CA A 701 1555 1555 2.79 LINK NH1 ARG A 353 ZN ZN A 704 1555 1555 2.32 LINK O CYS A 395 CA CA A 701 1555 1555 2.50 LINK OD1 ASN A 398 CA CA A 701 1555 1555 2.37 LINK O ILE A 410 CA CA A 703 1555 1555 2.26 LINK ND2 ASN A 413 CA CA A 703 1555 1555 2.27 LINK O PHE A 415 CA CA A 703 1555 1555 2.37 LINK OE1 GLU A 417 CA CA A 703 1555 1555 2.33 LINK OE1 GLU A 420 CA CA A 703 1555 1555 2.57 LINK OE2 GLU A 420 CA CA A 703 1555 1555 2.61 LINK OD2 ASP A 423 CA CA A 703 1555 1555 2.38 LINK OD2 ASP A 474 CA CA A 702 1555 1555 2.30 LINK O LEU A 475 CA CA A 702 1555 1555 2.43 LINK OE1 GLU A 477 CA CA A 702 1555 1555 2.48 LINK OE2 GLU A 477 CA CA A 702 1555 1555 2.79 LINK OD2 ASP A 489 CA CA A 702 1555 1555 2.16 LINK O VAL A 490 CA CA A 702 1555 1555 2.57 CRYST1 91.650 91.650 124.235 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010911 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010911 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008049 0.00000