HEADER HYDROLASE 13-OCT-09 3K7N TITLE STRUCTURES OF TWO ELAPID SNAKE VENOM METALLOPROTEASES WITH DISTINCT TITLE 2 ACTIVITIES HIGHLIGHT THE DISULFIDE PATTERNS IN THE D DOMAIN OF TITLE 3 ADAMALYSIN FAMILY PROTEINS CAVEAT 3K7N SER A 486 HAS WRONG CHIRALITY AT ATOM CA COMPND MOL_ID: 1; COMPND 2 MOLECULE: K-LIKE; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NAJA ATRA; SOURCE 3 ORGANISM_COMMON: CHINESE COBRA; SOURCE 4 ORGANISM_TAXID: 8656 KEYWDS SVMP, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.H.GUAN,Y.W.HUANG,W.G.WU,C.J.CHEN REVDAT 3 01-NOV-23 3K7N 1 HETSYN REVDAT 2 29-JUL-20 3K7N 1 CAVEAT COMPND REMARK HETNAM REVDAT 2 2 1 LINK SITE ATOM REVDAT 1 02-MAR-10 3K7N 0 JRNL AUTH H.H.GUAN,K.S.GOH,F.DAVAMANI,P.L.WU,Y.W.HUANG,J.JEYAKANTHAN, JRNL AUTH 2 W.G.WU,C.J.CHEN JRNL TITL STRUCTURES OF TWO ELAPID SNAKE VENOM METALLOPROTEASES WITH JRNL TITL 2 DISTINCT ACTIVITIES HIGHLIGHT THE DISULFIDE PATTERNS IN THE JRNL TITL 3 D DOMAIN OF ADAMALYSIN FAMILY PROTEINS JRNL REF J.STRUCT.BIOL. V. 169 294 2010 JRNL REFN ISSN 1047-8477 JRNL PMID 19932752 JRNL DOI 10.1016/J.JSB.2009.11.009 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 25427 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2512 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3067 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 117 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.029 REMARK 3 BOND ANGLES (DEGREES) : 2.560 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 46.30 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : NAG.PARAM REMARK 3 PARAMETER FILE 4 : WATER.PARAM REMARK 3 PARAMETER FILE 5 : FUC1.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3K7N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055648. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-07; 10-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 110; 110 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : NSRRC; SPRING-8 REMARK 200 BEAMLINE : BL13B1; BL12B2 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1; 1 REMARK 200 MONOCHROMATOR : SI 111; SI 111 REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; ADSC QUANTUM REMARK 200 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25427 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07400 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.10600 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 3K7L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG8000, 8% ETHYLENE GLYCOL, 0.1M REMARK 280 HEPES, PH 6.8, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 136.63250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.49950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.49950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 204.94875 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.49950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.49950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 68.31625 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.49950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.49950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 204.94875 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.49950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.49950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 68.31625 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 136.63250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 197 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 231 CD LYS A 231 CE 0.191 REMARK 500 CYS A 316 CB CYS A 316 SG 0.113 REMARK 500 CYS A 411 CB CYS A 411 SG 0.131 REMARK 500 CYS A 424 CB CYS A 424 SG 0.181 REMARK 500 SER A 486 CB SER A 486 OG 0.086 REMARK 500 SER A 486 C TYR A 487 N 0.197 REMARK 500 CYS A 538 CB CYS A 538 SG 0.111 REMARK 500 TYR A 549 CE2 TYR A 549 CD2 0.106 REMARK 500 CYS A 558 C LEU A 559 N 0.246 REMARK 500 GLU A 570 CD GLU A 570 OE2 0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 200 CB - CA - C ANGL. DEV. = 17.4 DEGREES REMARK 500 GLN A 202 N - CA - C ANGL. DEV. = 21.2 DEGREES REMARK 500 LYS A 231 CD - CE - NZ ANGL. DEV. = -15.5 DEGREES REMARK 500 ARG A 331 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 331 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 CYS A 358 N - CA - C ANGL. DEV. = -16.9 DEGREES REMARK 500 ILE A 359 CB - CA - C ANGL. DEV. = 12.8 DEGREES REMARK 500 GLN A 441 O - C - N ANGL. DEV. = -10.6 DEGREES REMARK 500 GLN A 485 N - CA - C ANGL. DEV. = 18.9 DEGREES REMARK 500 GLN A 485 CA - C - N ANGL. DEV. = -23.6 DEGREES REMARK 500 GLN A 485 O - C - N ANGL. DEV. = 27.5 DEGREES REMARK 500 SER A 486 CB - CA - C ANGL. DEV. = 18.0 DEGREES REMARK 500 SER A 486 O - C - N ANGL. DEV. = -31.4 DEGREES REMARK 500 TYR A 487 CB - CA - C ANGL. DEV. = 14.8 DEGREES REMARK 500 TYR A 487 N - CA - CB ANGL. DEV. = -30.3 DEGREES REMARK 500 TYR A 487 N - CA - C ANGL. DEV. = 27.9 DEGREES REMARK 500 ARG A 547 CG - CD - NE ANGL. DEV. = -13.4 DEGREES REMARK 500 ARG A 547 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 547 NE - CZ - NH2 ANGL. DEV. = -6.4 DEGREES REMARK 500 LEU A 548 CB - CG - CD2 ANGL. DEV. = 10.2 DEGREES REMARK 500 CYS A 558 O - C - N ANGL. DEV. = -23.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 200 -121.98 46.62 REMARK 500 GLN A 202 -58.19 75.41 REMARK 500 CYS A 316 -8.01 68.67 REMARK 500 VAL A 322 139.86 -170.56 REMARK 500 ILE A 357 -65.69 -135.79 REMARK 500 ASP A 454 -166.46 -168.93 REMARK 500 GLN A 465 25.26 -153.53 REMARK 500 GLN A 482 68.36 35.16 REMARK 500 GLN A 485 -32.84 -132.72 REMARK 500 PRO A 564 -50.31 -29.80 REMARK 500 GLN A 590 52.56 -95.43 REMARK 500 THR A 591 68.47 -119.21 REMARK 500 ALA A 592 42.13 33.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 199 TYR A 200 34.97 REMARK 500 TYR A 200 LEU A 201 -36.45 REMARK 500 CYS A 356 ILE A 357 -55.46 REMARK 500 ILE A 357 CYS A 358 -89.39 REMARK 500 ILE A 359 PRO A 360 -36.36 REMARK 500 GLN A 485 SER A 486 140.82 REMARK 500 SER A 486 TYR A 487 82.92 REMARK 500 ASP A 588 VAL A 589 143.04 REMARK 500 GLN A 590 THR A 591 140.51 REMARK 500 THR A 591 ALA A 592 37.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 486 37.59 REMARK 500 CYS A 558 -28.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 16 O REMARK 620 2 HOH A 23 O 146.0 REMARK 620 3 GLU A 208 OE1 89.3 91.0 REMARK 620 4 ASP A 292 OD1 137.4 75.6 101.3 REMARK 620 5 ASP A 292 OD2 85.4 126.9 105.8 52.0 REMARK 620 6 CYS A 395 O 84.1 88.4 167.1 91.1 84.7 REMARK 620 7 ASN A 398 ND2 70.2 75.9 87.1 150.4 152.4 80.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 704 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 115 O REMARK 620 2 HIS A 345 NE2 110.7 REMARK 620 3 HIS A 351 NE2 119.9 94.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 702 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 410 O REMARK 620 2 ASN A 413 ND2 75.6 REMARK 620 3 PHE A 415 O 151.5 75.9 REMARK 620 4 GLU A 417 OE1 89.8 85.5 88.9 REMARK 620 5 GLU A 420 OE1 126.9 155.0 81.0 103.4 REMARK 620 6 GLU A 420 OE2 78.3 153.5 130.2 89.5 51.2 REMARK 620 7 ASP A 423 OD2 78.3 82.7 97.2 165.0 91.2 96.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 703 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 457 OD2 REMARK 620 2 LEU A 458 O 80.0 REMARK 620 3 GLU A 460 OE1 151.3 96.5 REMARK 620 4 GLU A 460 OE2 157.2 83.9 46.6 REMARK 620 5 ASP A 472 OD1 89.0 165.7 88.8 109.1 REMARK 620 6 SER A 473 O 84.1 100.0 124.4 82.9 87.8 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3K7L RELATED DB: PDB REMARK 900 THE HOMOLOGOUS PROTEIN DBREF 3K7N A 197 593 PDB 3K7N 3K7N 197 593 SEQRES 1 A 397 GLN ASP ARG TYR LEU GLN ASP LYS LYS TYR ILE GLU PHE SEQRES 2 A 397 TYR VAL ILE VAL ASP ASN ARG MET TYR ARG TYR TYR ASN SEQRES 3 A 397 ASN ASP LYS PRO ALA ILE LYS ILE LYS VAL TYR GLU MET SEQRES 4 A 397 ILE ASN ALA VAL ASN THR LYS PHE ARG PRO LEU LYS ILE SEQRES 5 A 397 HIS ILE ALA LEU ILE GLY LEU GLU ILE TRP SER ASN LYS SEQRES 6 A 397 ASP LYS PHE GLU VAL LYS PRO ALA ALA SER VAL THR LEU SEQRES 7 A 397 LYS SER PHE GLY GLU TRP ARG GLU THR VAL LEU LEU PRO SEQRES 8 A 397 ARG LYS ARG ASN ASP ASN ALA GLN LEU LEU THR GLY ILE SEQRES 9 A 397 ASP PHE ASN GLY ASN THR VAL GLY ARG ALA TYR ILE GLY SEQRES 10 A 397 SER LEU CYS LYS THR ASN GLU SER VAL ALA ILE VAL GLN SEQRES 11 A 397 ASP TYR ASN ARG ARG ILE SER LEU VAL ALA SER THR ILE SEQRES 12 A 397 THR HIS GLU LEU GLY HIS ASN LEU GLY ILE HIS HIS ASP SEQRES 13 A 397 LYS ALA SER CYS ILE CYS ILE PRO GLY PRO CYS ILE MET SEQRES 14 A 397 LEU LYS LYS ARG THR ALA PRO ALA PHE GLN PHE SER SER SEQRES 15 A 397 CYS SER ILE ARG GLU TYR ARG GLU TYR LEU LEU ARG ASP SEQRES 16 A 397 ARG PRO GLN CYS ILE LEU ASN LYS PRO LEU SER THR ASP SEQRES 17 A 397 ILE VAL SER PRO PRO ILE CYS GLY ASN TYR PHE VAL GLU SEQRES 18 A 397 VAL GLY GLU GLU CYS ASP CYS GLY SER PRO GLN ALA CYS SEQRES 19 A 397 GLN SER ALA CYS CYS ASN ALA ALA THR CYS GLN PHE LYS SEQRES 20 A 397 GLY ALA GLU THR GLU CYS ARG VAL ALA LYS ASP ASP CYS SEQRES 21 A 397 ASP LEU PRO GLU LEU CYS THR GLY GLN SER ALA GLU CYS SEQRES 22 A 397 PRO THR ASP SER LEU GLN ARG ASN GLY HIS PRO CYS GLN SEQRES 23 A 397 ASN ASN GLN SER TYR CYS TYR ASN GLY THR CYS PRO THR SEQRES 24 A 397 LEU THR ASN GLN CYS ILE THR LEU LEU GLY PRO HIS PHE SEQRES 25 A 397 THR VAL SER PRO LYS GLY CYS PHE ASN LEU ASN MET ARG SEQRES 26 A 397 GLY ASP ASP GLY SER PHE CYS ARG MET GLU ASP GLY THR SEQRES 27 A 397 LYS ILE PRO CYS ALA ALA LYS ASP VAL LYS CYS GLY ARG SEQRES 28 A 397 LEU TYR CYS THR GLU LYS ASN THR MET SER CYS LEU ILE SEQRES 29 A 397 PRO PRO ASN PRO ASP GLY ILE MET ALA GLU PRO GLY THR SEQRES 30 A 397 LYS CYS GLY ASP GLY MET VAL CYS SER LYS GLY GLN CYS SEQRES 31 A 397 VAL ASP VAL GLN THR ALA TYR MODRES 3K7N ASN A 319 ASN GLYCOSYLATION SITE MODRES 3K7N ASN A 490 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET FUC B 3 10 HET NAG C 1 14 HET NAG C 2 14 HET FUL C 3 10 HET ZN A 704 1 HET CA A 701 1 HET CA A 702 1 HET CA A 703 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM FUL BETA-L-FUCOPYRANOSE HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN FUL BETA-L-FUCOSE; 6-DEOXY-BETA-L-GALACTOPYRANOSE; L- HETSYN 2 FUL FUCOSE; FUCOSE; 6-DEOXY-BETA-L-GALACTOSE FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 2 FUC C6 H12 O5 FORMUL 3 FUL C6 H12 O5 FORMUL 4 ZN ZN 2+ FORMUL 5 CA 3(CA 2+) FORMUL 8 HOH *117(H2 O) HELIX 1 1 ASP A 214 TYR A 221 1 8 HELIX 2 2 ASP A 224 ARG A 244 1 21 HELIX 3 3 ALA A 269 VAL A 284 1 16 HELIX 4 4 ARG A 331 LEU A 347 1 17 HELIX 5 5 SER A 377 ARG A 392 1 16 HELIX 6 6 PRO A 393 LEU A 397 5 5 HELIX 7 7 LEU A 401 ILE A 405 5 5 HELIX 8 8 THR A 495 GLY A 505 1 11 HELIX 9 9 PRO A 512 ARG A 521 5 10 HELIX 10 10 ASP A 542 GLY A 546 5 5 SHEET 1 A 5 ILE A 248 ILE A 257 0 SHEET 2 A 5 LYS A 205 VAL A 213 1 N ILE A 207 O ALA A 251 SHEET 3 A 5 ASN A 293 THR A 298 1 O LEU A 297 N ILE A 212 SHEET 4 A 5 VAL A 322 GLN A 326 1 O VAL A 325 N THR A 298 SHEET 5 A 5 GLY A 308 ALA A 310 -1 N ARG A 309 O ILE A 324 SHEET 1 B 2 CYS A 435 ASN A 436 0 SHEET 2 B 2 GLN A 441 PHE A 442 -1 O GLN A 441 N ASN A 436 SHEET 1 C 2 GLU A 448 ARG A 450 0 SHEET 2 C 2 GLU A 460 LEU A 461 -1 O GLU A 460 N ARG A 450 SHEET 1 D 2 PHE A 508 VAL A 510 0 SHEET 2 D 2 CYS A 550 GLU A 552 -1 O THR A 551 N THR A 509 SHEET 1 E 2 CYS A 528 ARG A 529 0 SHEET 2 E 2 LYS A 535 ILE A 536 -1 O ILE A 536 N CYS A 528 SHEET 1 F 3 LYS A 574 GLY A 576 0 SHEET 2 F 3 MET A 579 SER A 582 -1 O MET A 579 N GLY A 576 SHEET 3 F 3 GLN A 585 ASP A 588 -1 O GLN A 585 N SER A 582 SSBOND 1 CYS A 316 CYS A 395 1555 1555 1.92 SSBOND 2 CYS A 356 CYS A 379 1555 1555 2.11 SSBOND 3 CYS A 358 CYS A 363 1555 1555 2.09 SSBOND 4 CYS A 411 CYS A 440 1555 1555 2.11 SSBOND 5 CYS A 422 CYS A 435 1555 1555 2.21 SSBOND 6 CYS A 424 CYS A 430 1555 1555 2.18 SSBOND 7 CYS A 434 CYS A 462 1555 1555 2.13 SSBOND 8 CYS A 449 CYS A 469 1555 1555 2.11 SSBOND 9 CYS A 456 CYS A 488 1555 1555 2.14 SSBOND 10 CYS A 481 CYS A 493 1555 1555 2.09 SSBOND 11 CYS A 500 CYS A 550 1555 1555 2.17 SSBOND 12 CYS A 515 CYS A 558 1555 1555 2.07 SSBOND 13 CYS A 528 CYS A 538 1555 1555 2.03 SSBOND 14 CYS A 545 CYS A 581 1555 1555 2.10 SSBOND 15 CYS A 575 CYS A 586 1555 1555 2.13 LINK ND2 ASN A 319 C1 NAG B 1 1555 1555 1.46 LINK ND2 ASN A 490 C1 NAG C 1 1555 1555 1.47 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.48 LINK O6 NAG B 1 C1 FUC B 3 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.46 LINK O6 NAG C 1 C1 FUL C 3 1555 1555 1.49 LINK O HOH A 16 CA CA A 701 1555 1555 2.37 LINK O HOH A 23 CA CA A 701 1555 1555 2.26 LINK O HOH A 115 ZN ZN A 704 1555 1555 2.62 LINK OE1 GLU A 208 CA CA A 701 1555 1555 2.32 LINK OD1 ASP A 292 CA CA A 701 1555 1555 2.49 LINK OD2 ASP A 292 CA CA A 701 1555 1555 2.55 LINK NE2 HIS A 345 ZN ZN A 704 1555 1555 2.12 LINK NE2 HIS A 351 ZN ZN A 704 1555 1555 2.03 LINK O CYS A 395 CA CA A 701 1555 1555 2.23 LINK ND2 ASN A 398 CA CA A 701 1555 1555 2.50 LINK O ILE A 410 CA CA A 702 1555 1555 2.49 LINK ND2 ASN A 413 CA CA A 702 1555 1555 2.49 LINK O PHE A 415 CA CA A 702 1555 1555 2.27 LINK OE1 GLU A 417 CA CA A 702 1555 1555 2.38 LINK OE1 GLU A 420 CA CA A 702 1555 1555 2.38 LINK OE2 GLU A 420 CA CA A 702 1555 1555 2.62 LINK OD2 ASP A 423 CA CA A 702 1555 1555 2.34 LINK OD2 ASP A 457 CA CA A 703 1555 1555 2.57 LINK O LEU A 458 CA CA A 703 1555 1555 2.21 LINK OE1 GLU A 460 CA CA A 703 1555 1555 2.74 LINK OE2 GLU A 460 CA CA A 703 1555 1555 2.71 LINK OD1 ASP A 472 CA CA A 703 1555 1555 2.19 LINK O SER A 473 CA CA A 703 1555 1555 2.42 CISPEP 1 LEU A 201 GLN A 202 0 20.18 CISPEP 2 ASP A 532 GLY A 533 0 -29.82 CISPEP 3 ASP A 565 GLY A 566 0 -2.45 CISPEP 4 VAL A 589 GLN A 590 0 14.45 CISPEP 5 ALA A 592 TYR A 593 0 3.05 CRYST1 62.999 62.999 273.265 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015873 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015873 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003659 0.00000