HEADER OXIDOREDUCTASE 13-OCT-09 3K88 TITLE CRYSTAL STRUCTURE OF NADH:FAD OXIDOREDUCTASE (TFTC) - FAD, NADH TITLE 2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHLOROPHENOL-4-MONOOXYGENASE COMPONENT 1; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA CEPACIA; SOURCE 3 ORGANISM_TAXID: 292; SOURCE 4 STRAIN: AC1100; SOURCE 5 GENE: TFTC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET30 LIC KEYWDS NADH:FAD OXIDOREDUCTASE, MONOOXYGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.KANG,B.N.WEBB REVDAT 3 06-SEP-23 3K88 1 REMARK SEQADV REVDAT 2 02-MAR-10 3K88 1 JRNL REVDAT 1 10-NOV-09 3K88 0 JRNL AUTH B.N.WEBB,J.W.BALLINGER,E.KIM,S.M.BELCHIK,K.S.LAM,B.YOUN, JRNL AUTH 2 M.S.NISSEN,L.XUN,C.KANG JRNL TITL CHARACTERIZATION OF CHLOROPHENOL 4-MONOOXYGENASE (TFTD) AND JRNL TITL 2 NADH:FAD OXIDOREDUCTASE (TFTC) OF BURKHOLDERIA CEPACIA JRNL TITL 3 AC1100. JRNL REF J.BIOL.CHEM. V. 285 2014 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 19915006 JRNL DOI 10.1074/JBC.M109.056135 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 83.6 REMARK 3 NUMBER OF REFLECTIONS : 27350 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 1347 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.2360 - 4.2950 0.83 2585 135 0.1510 0.1690 REMARK 3 2 4.2950 - 3.4150 0.86 2702 141 0.1400 0.1680 REMARK 3 3 3.4150 - 2.9850 0.87 2687 138 0.1460 0.1840 REMARK 3 4 2.9850 - 2.7130 0.87 2698 138 0.1540 0.2090 REMARK 3 5 2.7130 - 2.5190 0.87 2716 139 0.1590 0.2080 REMARK 3 6 2.5190 - 2.3710 0.86 2633 141 0.1780 0.2380 REMARK 3 7 2.3710 - 2.2520 0.85 2695 131 0.1930 0.2760 REMARK 3 8 2.2520 - 2.1540 0.84 2597 136 0.1970 0.2380 REMARK 3 9 2.1540 - 2.0720 0.81 2551 133 0.2200 0.2710 REMARK 3 10 2.0720 - 2.0000 0.70 2139 115 0.2540 0.3040 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.39 REMARK 3 B_SOL : 58.96 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 1.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.20700 REMARK 3 B22 (A**2) : 0.20700 REMARK 3 B33 (A**2) : 2.78700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.022 2708 REMARK 3 ANGLE : 2.504 3728 REMARK 3 CHIRALITY : 0.146 404 REMARK 3 PLANARITY : 0.017 452 REMARK 3 DIHEDRAL : 22.258 1024 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3K88 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055669. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : KOHZU: DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : PT-COATED SI REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35903 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.580 REMARK 200 RESOLUTION RANGE LOW (A) : 35.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 3K86 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM FORMATE, 20% W/V PEG REMARK 280 4000, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 56.54700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.64743 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.89400 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 56.54700 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 32.64743 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 33.89400 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 56.54700 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 32.64743 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.89400 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 65.29485 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 67.78800 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 65.29485 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 67.78800 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 65.29485 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 67.78800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1001 REMARK 465 HIS A 1002 REMARK 465 ALA A 1003 REMARK 465 GLY A 1004 REMARK 465 GLU A 1005 REMARK 465 ALA A 1006 REMARK 465 VAL A 1007 REMARK 465 GLN A 1008 REMARK 465 GLN A 1009 REMARK 465 LEU A 1010 REMARK 465 LYS A 1011 REMARK 465 LYS A 1012 REMARK 465 ALA A 1013 REMARK 465 ALA A 1178 REMARK 465 GLU A 1179 REMARK 465 HIS A 1180 REMARK 465 HIS A 1181 REMARK 465 HIS A 1182 REMARK 465 HIS A 1183 REMARK 465 HIS A 1184 REMARK 465 HIS A 1185 REMARK 465 MET B 1 REMARK 465 HIS B 2 REMARK 465 ALA B 3 REMARK 465 GLY B 4 REMARK 465 GLU B 5 REMARK 465 ALA B 6 REMARK 465 VAL B 7 REMARK 465 GLN B 8 REMARK 465 GLN B 9 REMARK 465 LEU B 10 REMARK 465 LYS B 11 REMARK 465 LYS B 12 REMARK 465 ALA B 13 REMARK 465 ALA B 178 REMARK 465 GLU B 179 REMARK 465 HIS B 180 REMARK 465 HIS B 181 REMARK 465 HIS B 182 REMARK 465 HIS B 183 REMARK 465 HIS B 184 REMARK 465 HIS B 185 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 1124 OD2 ASP A 1133 1.53 REMARK 500 OH TYR B 124 OD1 ASP B 133 1.58 REMARK 500 O HOH B 196 O HOH B 284 2.09 REMARK 500 OH TYR A 1124 CG ASP A 1133 2.13 REMARK 500 O ALA B 122 CE2 TYR B 124 2.18 REMARK 500 CZ TYR B 124 OD1 ASP B 133 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 228 O HOH B 236 5655 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A1109 CD - NE - CZ ANGL. DEV. = 8.4 DEGREES REMARK 500 ARG A1109 NE - CZ - NH1 ANGL. DEV. = -7.6 DEGREES REMARK 500 ARG A1109 NE - CZ - NH2 ANGL. DEV. = 8.9 DEGREES REMARK 500 ARG B 155 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A1055 -60.11 -106.95 REMARK 500 ASP A1112 134.71 -33.18 REMARK 500 ILE A1118 -74.38 -128.73 REMARK 500 GLN B 116 -169.80 -129.79 REMARK 500 ILE B 118 -72.27 -115.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 1500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 1501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3K86 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NADH:FAD OXIDOREDUCTASE (TFTC), APO FORM REMARK 900 RELATED ID: 3K87 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NADH:FAD OXIDOREDUCTASE (TFTC), FAD COMPLEX DBREF 3K88 A 1001 1179 UNP O87008 O87008_BURCE 1 179 DBREF 3K88 B 1 179 UNP O87008 O87008_BURCE 1 179 SEQADV 3K88 HIS A 1180 UNP O87008 EXPRESSION TAG SEQADV 3K88 HIS A 1181 UNP O87008 EXPRESSION TAG SEQADV 3K88 HIS A 1182 UNP O87008 EXPRESSION TAG SEQADV 3K88 HIS A 1183 UNP O87008 EXPRESSION TAG SEQADV 3K88 HIS A 1184 UNP O87008 EXPRESSION TAG SEQADV 3K88 HIS A 1185 UNP O87008 EXPRESSION TAG SEQADV 3K88 HIS B 180 UNP O87008 EXPRESSION TAG SEQADV 3K88 HIS B 181 UNP O87008 EXPRESSION TAG SEQADV 3K88 HIS B 182 UNP O87008 EXPRESSION TAG SEQADV 3K88 HIS B 183 UNP O87008 EXPRESSION TAG SEQADV 3K88 HIS B 184 UNP O87008 EXPRESSION TAG SEQADV 3K88 HIS B 185 UNP O87008 EXPRESSION TAG SEQRES 1 A 185 MET HIS ALA GLY GLU ALA VAL GLN GLN LEU LYS LYS ALA SEQRES 2 A 185 PHE GLU THR VAL ALA SER PHE ASP PHE ARG ASP ALA LEU SEQRES 3 A 185 SER LYS ALA SER THR PRO VAL THR VAL VAL ALA THR ASN SEQRES 4 A 185 GLY PRO PHE GLY LEU ALA GLY LEU THR CYS SER ALA VAL SEQRES 5 A 185 CYS SER VAL CYS ASP ARG PRO PRO THR VAL LEU LEU CYS SEQRES 6 A 185 ILE ASN ARG LYS SER TYR ALA ALA GLY ILE ILE LYS SER SEQRES 7 A 185 ASN GLY VAL LEU SER VAL ASN TRP LEU ALA ALA GLY GLN SEQRES 8 A 185 ALA VAL ILE SER GLN THR PHE ALA GLY VAL GLY SER VAL SEQRES 9 A 185 PRO MET GLU GLU ARG PHE ALA ASP LYS GLY TRP GLN THR SEQRES 10 A 185 ILE ALA THR GLY ALA PRO TYR ARG MET ASP ALA ALA VAL SEQRES 11 A 185 SER PHE ASP CYS THR ILE ALA ASN ILE VAL ASP VAL GLY SEQRES 12 A 185 SER HIS SER VAL ILE PHE ALA GLU VAL VAL ALA ARG ASN SEQRES 13 A 185 HIS ALA GLU GLU CYS THR PRO LEU ILE TYR HIS ARG ARG SEQRES 14 A 185 GLN TYR ALA THR THR ARG SER LEU ALA GLU HIS HIS HIS SEQRES 15 A 185 HIS HIS HIS SEQRES 1 B 185 MET HIS ALA GLY GLU ALA VAL GLN GLN LEU LYS LYS ALA SEQRES 2 B 185 PHE GLU THR VAL ALA SER PHE ASP PHE ARG ASP ALA LEU SEQRES 3 B 185 SER LYS ALA SER THR PRO VAL THR VAL VAL ALA THR ASN SEQRES 4 B 185 GLY PRO PHE GLY LEU ALA GLY LEU THR CYS SER ALA VAL SEQRES 5 B 185 CYS SER VAL CYS ASP ARG PRO PRO THR VAL LEU LEU CYS SEQRES 6 B 185 ILE ASN ARG LYS SER TYR ALA ALA GLY ILE ILE LYS SER SEQRES 7 B 185 ASN GLY VAL LEU SER VAL ASN TRP LEU ALA ALA GLY GLN SEQRES 8 B 185 ALA VAL ILE SER GLN THR PHE ALA GLY VAL GLY SER VAL SEQRES 9 B 185 PRO MET GLU GLU ARG PHE ALA ASP LYS GLY TRP GLN THR SEQRES 10 B 185 ILE ALA THR GLY ALA PRO TYR ARG MET ASP ALA ALA VAL SEQRES 11 B 185 SER PHE ASP CYS THR ILE ALA ASN ILE VAL ASP VAL GLY SEQRES 12 B 185 SER HIS SER VAL ILE PHE ALA GLU VAL VAL ALA ARG ASN SEQRES 13 B 185 HIS ALA GLU GLU CYS THR PRO LEU ILE TYR HIS ARG ARG SEQRES 14 B 185 GLN TYR ALA THR THR ARG SER LEU ALA GLU HIS HIS HIS SEQRES 15 B 185 HIS HIS HIS HET FAD A1500 53 HET NAD A1501 44 HET FAD B 500 53 HET NAD B 501 44 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 NAD 2(C21 H27 N7 O14 P2) FORMUL 7 HOH *257(H2 O) HELIX 1 1 ALA A 1018 LYS A 1028 1 11 HELIX 2 2 SER A 1070 GLY A 1080 1 11 HELIX 3 3 ALA A 1088 GLY A 1090 5 3 HELIX 4 4 GLN A 1091 ALA A 1099 1 9 HELIX 5 5 PRO A 1105 ARG A 1109 5 5 HELIX 6 6 ALA B 18 LYS B 28 1 11 HELIX 7 7 SER B 70 GLY B 80 1 11 HELIX 8 8 GLN B 91 ALA B 99 1 9 HELIX 9 9 MET B 106 ALA B 111 5 6 SHEET 1 A 6 SER A1030 PRO A1032 0 SHEET 2 A 6 ILE A1165 HIS A1167 -1 O TYR A1166 N THR A1031 SHEET 3 A 6 GLN A1170 ARG A1175 -1 O ALA A1172 N ILE A1165 SHEET 4 A 6 GLN B 170 SER B 176 -1 O THR B 173 N ARG A1175 SHEET 5 A 6 ILE B 165 HIS B 167 -1 N ILE B 165 O ALA B 172 SHEET 6 A 6 SER B 30 PRO B 32 -1 N THR B 31 O TYR B 166 SHEET 1 B 7 ALA A1045 CYS A1049 0 SHEET 2 B 7 THR A1034 THR A1038 -1 N VAL A1036 O LEU A1047 SHEET 3 B 7 VAL A1081 TRP A1086 -1 O SER A1083 N ALA A1037 SHEET 4 B 7 VAL A1130 VAL A1142 -1 O PHE A1132 N VAL A1084 SHEET 5 B 7 HIS A1145 ARG A1155 -1 O PHE A1149 N ALA A1137 SHEET 6 B 7 THR A1061 ASN A1067 -1 N VAL A1062 O ALA A1150 SHEET 7 B 7 VAL A1052 CYS A1056 -1 N CYS A1053 O LEU A1063 SHEET 1 C 2 TRP A1115 GLN A1116 0 SHEET 2 C 2 TYR A1124 ARG A1125 -1 O TYR A1124 N GLN A1116 SHEET 1 D 7 ALA B 45 CYS B 49 0 SHEET 2 D 7 THR B 34 THR B 38 -1 N THR B 34 O CYS B 49 SHEET 3 D 7 VAL B 81 TRP B 86 -1 O SER B 83 N ALA B 37 SHEET 4 D 7 VAL B 130 VAL B 142 -1 O CYS B 134 N LEU B 82 SHEET 5 D 7 HIS B 145 ARG B 155 -1 O VAL B 147 N VAL B 140 SHEET 6 D 7 THR B 61 ASN B 67 -1 N LEU B 64 O ILE B 148 SHEET 7 D 7 VAL B 52 CYS B 56 -1 N VAL B 55 O THR B 61 SHEET 1 E 2 TRP B 115 GLN B 116 0 SHEET 2 E 2 TYR B 124 ARG B 125 -1 O TYR B 124 N GLN B 116 CISPEP 1 ARG A 1058 PRO A 1059 0 -4.90 CISPEP 2 ARG B 58 PRO B 59 0 -0.34 SITE 1 AC1 24 HOH A 59 HOH A 82 HOH A 104 HOH A 143 SITE 2 AC1 24 HOH A 157 HOH A 162 HOH A 220 THR A1048 SITE 3 AC1 24 CYS A1049 SER A1050 ALA A1051 CYS A1065 SITE 4 AC1 24 ILE A1066 ASN A1067 LYS A1069 ALA A1099 SITE 5 AC1 24 SER A1144 TYR A1166 NAD A1501 SER B 78 SITE 6 AC1 24 ASN B 79 GLY B 80 ILE B 136 HOH B 274 SITE 1 AC2 18 HOH A 56 HOH A 62 HOH A 82 HOH A 128 SITE 2 AC2 18 HOH A 143 HOH A 164 HOH A 191 HOH A 202 SITE 3 AC2 18 HOH A 215 ARG A1023 LEU A1026 ALA A1051 SITE 4 AC2 18 HIS A1145 TYR A1166 ARG A1169 FAD A1500 SITE 5 AC2 18 SER B 54 ASP B 57 SITE 1 AC3 25 THR B 48 CYS B 49 SER B 50 ALA B 51 SITE 2 AC3 25 CYS B 65 ILE B 66 ASN B 67 SER B 70 SITE 3 AC3 25 TYR B 71 ALA B 99 GLY B 100 VAL B 104 SITE 4 AC3 25 PRO B 105 MET B 106 ARG B 109 TYR B 166 SITE 5 AC3 25 HOH B 204 HOH B 237 HOH B 244 HOH B 266 SITE 6 AC3 25 HOH B 267 HOH B 276 HOH B 277 HOH B 281 SITE 7 AC3 25 NAD B 501 SITE 1 AC4 23 SER A1054 CYS A1056 ASP A1057 ARG B 23 SITE 2 AC4 23 LEU B 26 LYS B 113 GLN B 116 HIS B 145 SITE 3 AC4 23 TYR B 166 ARG B 169 HOH B 191 HOH B 196 SITE 4 AC4 23 HOH B 202 HOH B 215 HOH B 222 HOH B 242 SITE 5 AC4 23 HOH B 262 HOH B 268 HOH B 276 HOH B 284 SITE 6 AC4 23 HOH B 288 HOH B 297 FAD B 500 CRYST1 113.094 113.094 101.682 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008842 0.005105 0.000000 0.00000 SCALE2 0.000000 0.010210 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009835 0.00000