HEADER BIOSYNTHETIC PROTEIN 15-OCT-09 3K9G TITLE CRYSTAL STRUCTURE OF A PLASMID PARTITION PROTEIN FROM BORRELIA TITLE 2 BURGDORFERI AT 2.25A RESOLUTION, IODIDE SOAK COMPND MOL_ID: 1; COMPND 2 MOLECULE: PF-32 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PLASMID PARTITION PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BORRELIA BURGDORFERI; SOURCE 3 ORGANISM_COMMON: LYME DISEASE SPIROCHETE; SOURCE 4 ORGANISM_TAXID: 224326; SOURCE 5 STRAIN: B31; SOURCE 6 GENE: PF-32, BB_S35; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS SSGCID, SBRI, DECODE BIOSTRUCTURES, UW, NIH, NIAID, BORELLIA KEYWDS 2 BURGDORFERI, PLASMID PARTITION PROTEIN, IODIDE, SAD PHASING, KEYWDS 3 STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 4 INFECTIOUS DISEASE, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 21-FEB-24 3K9G 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 3K9G 1 JRNL REVDAT 2 06-JUL-11 3K9G 1 JRNL REVDAT 1 03-NOV-09 3K9G 0 JRNL AUTH J.ABENDROTH,A.S.GARDBERG,J.I.ROBINSON,J.S.CHRISTENSEN, JRNL AUTH 2 B.L.STAKER,P.J.MYLER,L.J.STEWART,T.E.EDWARDS JRNL TITL SAD PHASING USING IODIDE IONS IN A HIGH-THROUGHPUT JRNL TITL 2 STRUCTURAL GENOMICS ENVIRONMENT. JRNL REF J STRUCT FUNCT GENOMICS V. 12 83 2011 JRNL REFN JRNL PMID 21359836 JRNL DOI 10.1007/S10969-011-9101-7 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0104 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 15985 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 795 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1080 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 54 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1749 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 91 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.45 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.70000 REMARK 3 B22 (A**2) : 0.70000 REMARK 3 B33 (A**2) : -1.41000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.250 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.213 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.133 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.088 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.891 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1784 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1132 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2431 ; 1.360 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2804 ; 0.918 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 226 ; 6.242 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 69 ;38.316 ;25.507 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 306 ;14.756 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;12.343 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 307 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1947 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 343 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1131 ; 0.944 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 453 ; 0.168 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1832 ; 1.710 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 653 ; 2.225 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 598 ; 3.530 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3K9G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055713. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15985 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 30.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 25.00 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 34.5300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.00 REMARK 200 R MERGE FOR SHELL (I) : 0.58200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: INDEX SCREEN A10: 3M NACL, 100MM REMARK 280 BISTRIS PH 6.5 EXCHANGED IN 2M NACL, 1M KI, BOBUA.01478.A AT REMARK 280 33MG/ML, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 100.45000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 27.90500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 27.90500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 150.67500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 27.90500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 27.90500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 50.22500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 27.90500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 27.90500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 150.67500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 27.90500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 27.90500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 50.22500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 100.45000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 200.90000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 299 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 301 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 ALA A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 THR A -10 REMARK 465 LEU A -9 REMARK 465 GLU A -8 REMARK 465 ALA A -7 REMARK 465 GLN A -6 REMARK 465 THR A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 ASN A 3 REMARK 465 LYS A 4 REMARK 465 ARG A 212 REMARK 465 GLU A 213 REMARK 465 ASP A 214 REMARK 465 LEU A 215 REMARK 465 ASN A 216 REMARK 465 ARG A 217 REMARK 465 ARG A 218 REMARK 465 ILE A 219 REMARK 465 ALA A 220 REMARK 465 GLU A 221 REMARK 465 ASN A 222 REMARK 465 ASN A 223 REMARK 465 ASN A 224 REMARK 465 PHE A 225 REMARK 465 ASP A 226 REMARK 465 LEU A 227 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 5 CG CD CE NZ REMARK 470 LYS A 15 CG CD CE NZ REMARK 470 LYS A 36 CG CD CE NZ REMARK 470 GLU A 54 CG CD OE1 OE2 REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 LYS A 58 CG CD CE NZ REMARK 470 LYS A 65 CG CD CE NZ REMARK 470 LYS A 105 CG CD CE NZ REMARK 470 GLU A 107 CG CD OE1 OE2 REMARK 470 HIS A 108 CG ND1 CD2 CE1 NE2 REMARK 470 TYR A 121 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TYR A 122 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 123 CG CD CE NZ REMARK 470 LYS A 172 CG CD CE NZ REMARK 470 ARG A 185 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 188 CG CD CE NZ REMARK 470 ASN A 189 CG OD1 ND2 REMARK 470 THR A 191 OG1 CG2 REMARK 470 LYS A 200 CG CD CE NZ REMARK 470 ASN A 228 CG OD1 ND2 REMARK 470 LYS A 229 CG CD CE NZ REMARK 470 ASP A 230 CG OD1 OD2 REMARK 470 TYR A 231 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 233 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 145 CB CYS A 145 SG -0.106 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 120 -84.01 -136.77 REMARK 500 TYR A 121 -83.60 34.44 REMARK 500 TYR A 122 -19.08 -32.96 REMARK 500 ASN A 174 46.39 70.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 300 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 99 O REMARK 620 2 SER A 102 OG 99.1 REMARK 620 3 HOH A 267 O 70.8 84.7 REMARK 620 4 HOH A 282 O 90.5 169.0 93.5 REMARK 620 5 HOH A 313 O 161.8 78.1 91.0 91.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 247 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 248 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 249 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 252 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 254 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 255 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 257 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 258 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: BOBUA.01478.A RELATED DB: TARGETDB REMARK 900 RELATED ID: 3K9H RELATED DB: PDB DBREF 3K9G A 1 246 UNP O68233 O68233_BORBU 1 246 SEQADV 3K9G MET A -20 UNP O68233 EXPRESSION TAG SEQADV 3K9G ALA A -19 UNP O68233 EXPRESSION TAG SEQADV 3K9G HIS A -18 UNP O68233 EXPRESSION TAG SEQADV 3K9G HIS A -17 UNP O68233 EXPRESSION TAG SEQADV 3K9G HIS A -16 UNP O68233 EXPRESSION TAG SEQADV 3K9G HIS A -15 UNP O68233 EXPRESSION TAG SEQADV 3K9G HIS A -14 UNP O68233 EXPRESSION TAG SEQADV 3K9G HIS A -13 UNP O68233 EXPRESSION TAG SEQADV 3K9G MET A -12 UNP O68233 EXPRESSION TAG SEQADV 3K9G GLY A -11 UNP O68233 EXPRESSION TAG SEQADV 3K9G THR A -10 UNP O68233 EXPRESSION TAG SEQADV 3K9G LEU A -9 UNP O68233 EXPRESSION TAG SEQADV 3K9G GLU A -8 UNP O68233 EXPRESSION TAG SEQADV 3K9G ALA A -7 UNP O68233 EXPRESSION TAG SEQADV 3K9G GLN A -6 UNP O68233 EXPRESSION TAG SEQADV 3K9G THR A -5 UNP O68233 EXPRESSION TAG SEQADV 3K9G GLN A -4 UNP O68233 EXPRESSION TAG SEQADV 3K9G GLY A -3 UNP O68233 EXPRESSION TAG SEQADV 3K9G PRO A -2 UNP O68233 EXPRESSION TAG SEQADV 3K9G GLY A -1 UNP O68233 EXPRESSION TAG SEQADV 3K9G SER A 0 UNP O68233 EXPRESSION TAG SEQRES 1 A 267 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 267 ALA GLN THR GLN GLY PRO GLY SER MET ASP ASN LYS LYS SEQRES 3 A 267 PRO LYS ILE ILE THR ILE ALA SER ILE LYS GLY GLY VAL SEQRES 4 A 267 GLY LYS SER THR SER ALA ILE ILE LEU ALA THR LEU LEU SEQRES 5 A 267 SER LYS ASN ASN LYS VAL LEU LEU ILE ASP MET ASP THR SEQRES 6 A 267 GLN ALA SER ILE THR SER TYR PHE TYR GLU LYS ILE GLU SEQRES 7 A 267 LYS LEU GLY ILE ASN PHE THR LYS PHE ASN ILE TYR GLU SEQRES 8 A 267 ILE LEU LYS GLU ASN VAL ASP ILE ASP SER THR ILE ILE SEQRES 9 A 267 ASN VAL ASP ASN ASN LEU ASP LEU ILE PRO SER TYR LEU SEQRES 10 A 267 THR LEU HIS ASN PHE SER GLU ASP LYS ILE GLU HIS LYS SEQRES 11 A 267 ASP PHE LEU LEU LYS THR SER LEU GLY THR LEU TYR TYR SEQRES 12 A 267 LYS TYR ASP TYR ILE VAL ILE ASP THR ASN PRO SER LEU SEQRES 13 A 267 ASP VAL THR LEU LYS ASN ALA LEU LEU CYS SER ASP TYR SEQRES 14 A 267 VAL ILE ILE PRO MET THR ALA GLU LYS TRP ALA VAL GLU SEQRES 15 A 267 SER LEU ASP LEU PHE ASN PHE PHE VAL ARG LYS LEU ASN SEQRES 16 A 267 LEU PHE LEU PRO ILE PHE LEU ILE ILE THR ARG PHE LYS SEQRES 17 A 267 LYS ASN ARG THR HIS LYS THR LEU PHE GLU ILE LEU LYS SEQRES 18 A 267 THR LYS ASP ARG PHE LEU GLY THR ILE SER GLU ARG GLU SEQRES 19 A 267 ASP LEU ASN ARG ARG ILE ALA GLU ASN ASN ASN PHE ASP SEQRES 20 A 267 LEU ASN LYS ASP TYR ILE LYS GLU TYR GLU ASN ILE LEU SEQRES 21 A 267 GLU ILE PHE LEU LYS LYS ILE HET NA A 300 1 HET IOD A 247 1 HET IOD A 248 1 HET IOD A 249 1 HET IOD A 250 1 HET IOD A 251 1 HET IOD A 252 1 HET IOD A 253 1 HET IOD A 254 1 HET IOD A 255 1 HET IOD A 256 1 HET IOD A 257 1 HET IOD A 258 1 HETNAM NA SODIUM ION HETNAM IOD IODIDE ION FORMUL 2 NA NA 1+ FORMUL 3 IOD 12(I 1-) FORMUL 15 HOH *91(H2 O) HELIX 1 1 GLY A 19 SER A 32 1 14 HELIX 2 2 ALA A 46 PHE A 52 1 7 HELIX 3 3 PHE A 52 LEU A 59 1 8 HELIX 4 4 ASN A 67 LYS A 73 1 7 HELIX 5 5 ASP A 77 ILE A 82 5 6 HELIX 6 6 TYR A 95 PHE A 101 5 7 HELIX 7 7 HIS A 108 ASP A 110 5 3 HELIX 8 8 PHE A 111 THR A 119 1 9 HELIX 9 9 ASP A 136 LEU A 144 1 9 HELIX 10 10 TRP A 158 LYS A 172 1 15 HELIX 11 11 LYS A 193 LYS A 200 1 8 HELIX 12 12 LYS A 229 ILE A 246 1 18 SHEET 1 A 8 ILE A 83 ASP A 86 0 SHEET 2 A 8 LEU A 89 ILE A 92 -1 O LEU A 89 N VAL A 85 SHEET 3 A 8 VAL A 37 MET A 42 1 N LEU A 39 O ASP A 90 SHEET 4 A 8 TYR A 126 THR A 131 1 O VAL A 128 N ILE A 40 SHEET 5 A 8 LYS A 7 ILE A 11 1 N ILE A 9 O ILE A 127 SHEET 6 A 8 TYR A 148 THR A 154 1 O TYR A 148 N THR A 10 SHEET 7 A 8 ILE A 179 PHE A 186 1 O ILE A 182 N MET A 153 SHEET 8 A 8 PHE A 205 SER A 210 1 O LEU A 206 N LEU A 181 LINK O HIS A 99 NA NA A 300 1555 1555 2.63 LINK OG SER A 102 NA NA A 300 1555 1555 2.26 LINK O HOH A 267 NA NA A 300 1555 1555 2.51 LINK O HOH A 282 NA NA A 300 1555 1555 2.48 LINK NA NA A 300 O HOH A 313 1555 1555 2.48 SITE 1 AC1 6 HIS A 99 SER A 102 LEU A 135 HOH A 267 SITE 2 AC1 6 HOH A 282 HOH A 313 SITE 1 AC2 1 ALA A 155 SITE 1 AC3 2 LYS A 33 ASN A 87 SITE 1 AC4 2 ASN A 167 HOH A 281 SITE 1 AC5 1 ILE A 14 SITE 1 AC6 2 ASN A 34 ASN A 88 SITE 1 AC7 2 SER A 50 TRP A 158 SITE 1 AC8 1 HOH A 272 SITE 1 AC9 1 HOH A 330 SITE 1 BC1 1 ASN A 35 CRYST1 55.810 55.810 200.900 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017918 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017918 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004978 0.00000