data_3K9I # _entry.id 3K9I # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3K9I pdb_00003k9i 10.2210/pdb3k9i/pdb RCSB RCSB055715 ? ? WWPDB D_1000055715 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 361720 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3K9I _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-10-15 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of Putative protein binding protein (NP_241345.1) from Bacillus halodurans at 2.71 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3K9I _cell.length_a 73.656 _cell.length_b 73.656 _cell.length_c 115.838 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3K9I _symmetry.Int_Tables_number 178 _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'BH0479 protein' _entity.formula_weight 13132.761 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'sequence database reference 49-164' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'putative binding protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GVLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYA(MSE)VLYNLGR YEQGVELLLKIIAETSDDETIQSYKQAILFYADKLDETWKA ; _entity_poly.pdbx_seq_one_letter_code_can ;GVLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG VELLLKIIAETSDDETIQSYKQAILFYADKLDETWKA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 361720 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 VAL n 1 3 LEU n 1 4 GLY n 1 5 LEU n 1 6 GLU n 1 7 ALA n 1 8 GLN n 1 9 ALA n 1 10 VAL n 1 11 PRO n 1 12 TYR n 1 13 TYR n 1 14 GLU n 1 15 LYS n 1 16 ALA n 1 17 ILE n 1 18 ALA n 1 19 SER n 1 20 GLY n 1 21 LEU n 1 22 GLN n 1 23 GLY n 1 24 LYS n 1 25 ASP n 1 26 LEU n 1 27 ALA n 1 28 GLU n 1 29 CYS n 1 30 TYR n 1 31 LEU n 1 32 GLY n 1 33 LEU n 1 34 GLY n 1 35 SER n 1 36 THR n 1 37 PHE n 1 38 ARG n 1 39 THR n 1 40 LEU n 1 41 GLY n 1 42 GLU n 1 43 TYR n 1 44 ARG n 1 45 LYS n 1 46 ALA n 1 47 GLU n 1 48 ALA n 1 49 VAL n 1 50 LEU n 1 51 ALA n 1 52 ASN n 1 53 GLY n 1 54 VAL n 1 55 LYS n 1 56 GLN n 1 57 PHE n 1 58 PRO n 1 59 ASN n 1 60 HIS n 1 61 GLN n 1 62 ALA n 1 63 LEU n 1 64 ARG n 1 65 VAL n 1 66 PHE n 1 67 TYR n 1 68 ALA n 1 69 MSE n 1 70 VAL n 1 71 LEU n 1 72 TYR n 1 73 ASN n 1 74 LEU n 1 75 GLY n 1 76 ARG n 1 77 TYR n 1 78 GLU n 1 79 GLN n 1 80 GLY n 1 81 VAL n 1 82 GLU n 1 83 LEU n 1 84 LEU n 1 85 LEU n 1 86 LYS n 1 87 ILE n 1 88 ILE n 1 89 ALA n 1 90 GLU n 1 91 THR n 1 92 SER n 1 93 ASP n 1 94 ASP n 1 95 GLU n 1 96 THR n 1 97 ILE n 1 98 GLN n 1 99 SER n 1 100 TYR n 1 101 LYS n 1 102 GLN n 1 103 ALA n 1 104 ILE n 1 105 LEU n 1 106 PHE n 1 107 TYR n 1 108 ALA n 1 109 ASP n 1 110 LYS n 1 111 LEU n 1 112 ASP n 1 113 GLU n 1 114 THR n 1 115 TRP n 1 116 LYS n 1 117 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene BH0479 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus halodurans' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 86665 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedETS _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9KFK0_BACHD _struct_ref.pdbx_db_accession Q9KFK0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV ELLLKIIAETSDDETIQSYKQAILFYADKLDETWKA ; _struct_ref.pdbx_align_begin 49 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3K9I _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 117 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9KFK0 _struct_ref_seq.db_align_beg 49 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 164 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 49 _struct_ref_seq.pdbx_auth_seq_align_end 164 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3K9I _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q9KFK0 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3K9I # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.45 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 64.38 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.07 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details '3.5M sodium formate, 0.1M HEPES pH 7.07, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.details 'Adjustable focusing mirrors in K-B geometry' _diffrn_detector.pdbx_collection_date 2006-08-12 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111) Double Crystal Monochrometer' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97925 1.0 2 0.94926 1.0 3 0.97939 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline 23-ID-D _diffrn_source.type 'APS BEAMLINE 23-ID-D' _diffrn_source.pdbx_wavelength_list 0.97925,0.94926,0.97939 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS # _reflns.entry_id 3K9I _reflns.d_resolution_high 2.71 _reflns.d_resolution_low 42.875 _reflns.number_obs 5493 _reflns.pdbx_Rmerge_I_obs 0.056 _reflns.pdbx_netI_over_sigmaI 25.030 _reflns.percent_possible_obs 99.800 _reflns.B_iso_Wilson_estimate 85.260 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.71 2.81 5349 ? 530 0.731 3.1 ? ? ? ? ? 99.30 1 1 2.81 2.92 5493 ? 524 0.563 4.2 ? ? ? ? ? 100.00 2 1 2.92 3.05 5472 ? 522 0.307 7.6 ? ? ? ? ? 100.00 3 1 3.05 3.21 5436 ? 520 0.195 11.5 ? ? ? ? ? 100.00 4 1 3.21 3.41 5606 ? 540 0.120 17.6 ? ? ? ? ? 100.00 5 1 3.41 3.67 5599 ? 542 0.087 23.7 ? ? ? ? ? 100.00 6 1 3.67 4.04 5505 ? 544 0.056 35.0 ? ? ? ? ? 100.00 7 1 4.04 4.62 5543 ? 557 0.042 45.0 ? ? ? ? ? 100.00 8 1 4.62 5.80 5518 ? 567 0.043 43.3 ? ? ? ? ? 100.00 9 1 5.80 42.875 5647 ? 645 0.028 50.7 ? ? ? ? ? 99.10 10 1 # _refine.entry_id 3K9I _refine.ls_d_res_high 2.710 _refine.ls_d_res_low 42.875 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.850 _refine.ls_number_reflns_obs 5461 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.221 _refine.ls_R_factor_R_work 0.221 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.233 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.500 _refine.ls_number_reflns_R_free 245 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 42.496 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.680 _refine.aniso_B[2][2] 0.680 _refine.aniso_B[3][3] -1.030 _refine.aniso_B[1][2] 0.340 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.944 _refine.correlation_coeff_Fo_to_Fc_free 0.941 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.433 _refine.pdbx_overall_ESU_R_Free 0.263 _refine.overall_SU_ML 0.223 _refine.overall_SU_B 24.849 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 80.03 _refine.B_iso_min 16.44 _refine.occupancy_max 1.00 _refine.occupancy_min 0.75 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 874 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 874 _refine_hist.d_res_high 2.710 _refine_hist.d_res_low 42.875 # loop_ _refine_ls_restr.type _refine_ls_restr.pdbx_refine_id _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 'X-RAY DIFFRACTION' 891 0.017 0.022 ? ? r_bond_other_d 'X-RAY DIFFRACTION' 593 0.001 0.020 ? ? r_angle_refined_deg 'X-RAY DIFFRACTION' 1205 1.530 1.968 ? ? r_angle_other_deg 'X-RAY DIFFRACTION' 1445 0.996 3.000 ? ? r_dihedral_angle_1_deg 'X-RAY DIFFRACTION' 109 5.547 5.000 ? ? r_dihedral_angle_2_deg 'X-RAY DIFFRACTION' 43 36.068 24.651 ? ? r_dihedral_angle_3_deg 'X-RAY DIFFRACTION' 152 16.720 15.000 ? ? r_dihedral_angle_4_deg 'X-RAY DIFFRACTION' 4 17.762 15.000 ? ? r_chiral_restr 'X-RAY DIFFRACTION' 132 0.087 0.200 ? ? r_gen_planes_refined 'X-RAY DIFFRACTION' 997 0.007 0.020 ? ? r_gen_planes_other 'X-RAY DIFFRACTION' 186 0.001 0.020 ? ? r_mcbond_it 'X-RAY DIFFRACTION' 543 1.573 3.000 ? ? r_mcbond_other 'X-RAY DIFFRACTION' 225 0.306 3.000 ? ? r_mcangle_it 'X-RAY DIFFRACTION' 861 2.885 5.000 ? ? r_scbond_it 'X-RAY DIFFRACTION' 348 5.693 8.000 ? ? r_scangle_it 'X-RAY DIFFRACTION' 344 8.177 11.000 ? ? # _refine_ls_shell.d_res_high 2.710 _refine_ls_shell.d_res_low 2.780 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 98.430 _refine_ls_shell.number_reflns_R_work 363 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.315 _refine_ls_shell.R_factor_R_free 0.472 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 13 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 376 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3K9I _struct.title 'Crystal structure of Putative protein binding protein (NP_241345.1) from Bacillus halodurans at 2.71 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;Putative protein binding protein, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, PROTEIN BINDING ; _struct_keywords.pdbx_keywords 'PROTEIN BINDING' _struct_keywords.entry_id 3K9I # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 9 ? ALA A 18 ? ALA A 56 ALA A 65 1 ? 10 HELX_P HELX_P2 2 GLN A 22 ? LEU A 40 ? GLN A 69 LEU A 87 1 ? 19 HELX_P HELX_P3 3 GLU A 42 ? PHE A 57 ? GLU A 89 PHE A 104 1 ? 16 HELX_P HELX_P4 4 HIS A 60 ? GLY A 75 ? HIS A 107 GLY A 122 1 ? 16 HELX_P HELX_P5 5 ARG A 76 ? SER A 92 ? ARG A 123 SER A 139 1 ? 17 HELX_P HELX_P6 6 ASP A 94 ? TYR A 100 ? ASP A 141 TYR A 147 1 ? 7 HELX_P HELX_P7 7 TYR A 100 ? ALA A 108 ? TYR A 147 ALA A 155 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ALA 68 C ? ? ? 1_555 A MSE 69 N ? ? A ALA 115 A MSE 116 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale2 covale both ? A MSE 69 C ? ? ? 1_555 A VAL 70 N ? ? A MSE 116 A VAL 117 1_555 ? ? ? ? ? ? ? 1.329 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 3K9I _atom_sites.fract_transf_matrix[1][1] 0.013577 _atom_sites.fract_transf_matrix[1][2] 0.007838 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015677 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008633 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 VAL 2 49 ? ? ? A . n A 1 3 LEU 3 50 ? ? ? A . n A 1 4 GLY 4 51 ? ? ? A . n A 1 5 LEU 5 52 ? ? ? A . n A 1 6 GLU 6 53 ? ? ? A . n A 1 7 ALA 7 54 54 ALA ALA A . n A 1 8 GLN 8 55 55 GLN GLN A . n A 1 9 ALA 9 56 56 ALA ALA A . n A 1 10 VAL 10 57 57 VAL VAL A . n A 1 11 PRO 11 58 58 PRO PRO A . n A 1 12 TYR 12 59 59 TYR TYR A . n A 1 13 TYR 13 60 60 TYR TYR A . n A 1 14 GLU 14 61 61 GLU GLU A . n A 1 15 LYS 15 62 62 LYS LYS A . n A 1 16 ALA 16 63 63 ALA ALA A . n A 1 17 ILE 17 64 64 ILE ILE A . n A 1 18 ALA 18 65 65 ALA ALA A . n A 1 19 SER 19 66 66 SER SER A . n A 1 20 GLY 20 67 67 GLY GLY A . n A 1 21 LEU 21 68 68 LEU LEU A . n A 1 22 GLN 22 69 69 GLN GLN A . n A 1 23 GLY 23 70 70 GLY GLY A . n A 1 24 LYS 24 71 71 LYS LYS A . n A 1 25 ASP 25 72 72 ASP ASP A . n A 1 26 LEU 26 73 73 LEU LEU A . n A 1 27 ALA 27 74 74 ALA ALA A . n A 1 28 GLU 28 75 75 GLU GLU A . n A 1 29 CYS 29 76 76 CYS CYS A . n A 1 30 TYR 30 77 77 TYR TYR A . n A 1 31 LEU 31 78 78 LEU LEU A . n A 1 32 GLY 32 79 79 GLY GLY A . n A 1 33 LEU 33 80 80 LEU LEU A . n A 1 34 GLY 34 81 81 GLY GLY A . n A 1 35 SER 35 82 82 SER SER A . n A 1 36 THR 36 83 83 THR THR A . n A 1 37 PHE 37 84 84 PHE PHE A . n A 1 38 ARG 38 85 85 ARG ARG A . n A 1 39 THR 39 86 86 THR THR A . n A 1 40 LEU 40 87 87 LEU LEU A . n A 1 41 GLY 41 88 88 GLY GLY A . n A 1 42 GLU 42 89 89 GLU GLU A . n A 1 43 TYR 43 90 90 TYR TYR A . n A 1 44 ARG 44 91 91 ARG ARG A . n A 1 45 LYS 45 92 92 LYS LYS A . n A 1 46 ALA 46 93 93 ALA ALA A . n A 1 47 GLU 47 94 94 GLU GLU A . n A 1 48 ALA 48 95 95 ALA ALA A . n A 1 49 VAL 49 96 96 VAL VAL A . n A 1 50 LEU 50 97 97 LEU LEU A . n A 1 51 ALA 51 98 98 ALA ALA A . n A 1 52 ASN 52 99 99 ASN ASN A . n A 1 53 GLY 53 100 100 GLY GLY A . n A 1 54 VAL 54 101 101 VAL VAL A . n A 1 55 LYS 55 102 102 LYS LYS A . n A 1 56 GLN 56 103 103 GLN GLN A . n A 1 57 PHE 57 104 104 PHE PHE A . n A 1 58 PRO 58 105 105 PRO PRO A . n A 1 59 ASN 59 106 106 ASN ASN A . n A 1 60 HIS 60 107 107 HIS HIS A . n A 1 61 GLN 61 108 108 GLN GLN A . n A 1 62 ALA 62 109 109 ALA ALA A . n A 1 63 LEU 63 110 110 LEU LEU A . n A 1 64 ARG 64 111 111 ARG ARG A . n A 1 65 VAL 65 112 112 VAL VAL A . n A 1 66 PHE 66 113 113 PHE PHE A . n A 1 67 TYR 67 114 114 TYR TYR A . n A 1 68 ALA 68 115 115 ALA ALA A . n A 1 69 MSE 69 116 116 MSE MSE A . n A 1 70 VAL 70 117 117 VAL VAL A . n A 1 71 LEU 71 118 118 LEU LEU A . n A 1 72 TYR 72 119 119 TYR TYR A . n A 1 73 ASN 73 120 120 ASN ASN A . n A 1 74 LEU 74 121 121 LEU LEU A . n A 1 75 GLY 75 122 122 GLY GLY A . n A 1 76 ARG 76 123 123 ARG ARG A . n A 1 77 TYR 77 124 124 TYR TYR A . n A 1 78 GLU 78 125 125 GLU GLU A . n A 1 79 GLN 79 126 126 GLN GLN A . n A 1 80 GLY 80 127 127 GLY GLY A . n A 1 81 VAL 81 128 128 VAL VAL A . n A 1 82 GLU 82 129 129 GLU GLU A . n A 1 83 LEU 83 130 130 LEU LEU A . n A 1 84 LEU 84 131 131 LEU LEU A . n A 1 85 LEU 85 132 132 LEU LEU A . n A 1 86 LYS 86 133 133 LYS LYS A . n A 1 87 ILE 87 134 134 ILE ILE A . n A 1 88 ILE 88 135 135 ILE ILE A . n A 1 89 ALA 89 136 136 ALA ALA A . n A 1 90 GLU 90 137 137 GLU GLU A . n A 1 91 THR 91 138 138 THR THR A . n A 1 92 SER 92 139 139 SER SER A . n A 1 93 ASP 93 140 140 ASP ASP A . n A 1 94 ASP 94 141 141 ASP ASP A . n A 1 95 GLU 95 142 142 GLU GLU A . n A 1 96 THR 96 143 143 THR THR A . n A 1 97 ILE 97 144 144 ILE ILE A . n A 1 98 GLN 98 145 145 GLN GLN A . n A 1 99 SER 99 146 146 SER SER A . n A 1 100 TYR 100 147 147 TYR TYR A . n A 1 101 LYS 101 148 148 LYS LYS A . n A 1 102 GLN 102 149 149 GLN GLN A . n A 1 103 ALA 103 150 150 ALA ALA A . n A 1 104 ILE 104 151 151 ILE ILE A . n A 1 105 LEU 105 152 152 LEU LEU A . n A 1 106 PHE 106 153 153 PHE PHE A . n A 1 107 TYR 107 154 154 TYR TYR A . n A 1 108 ALA 108 155 155 ALA ALA A . n A 1 109 ASP 109 156 156 ASP ASP A . n A 1 110 LYS 110 157 157 LYS LYS A . n A 1 111 LEU 111 158 158 LEU LEU A . n A 1 112 ASP 112 159 159 ASP ASP A . n A 1 113 GLU 113 160 160 GLU GLU A . n A 1 114 THR 114 161 161 THR THR A . n A 1 115 TRP 115 162 162 TRP TRP A . n A 1 116 LYS 116 163 163 LYS LYS A . n A 1 117 ALA 117 164 ? ? ? A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id MSE _pdbx_struct_mod_residue.label_seq_id 69 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id MSE _pdbx_struct_mod_residue.auth_seq_id 116 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id MET _pdbx_struct_mod_residue.details SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3760 ? 1 MORE -28 ? 1 'SSA (A^2)' 10550 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 10_664 -y+1,-x+1,-z-1/6 0.5000000000 -0.8660254038 0.0000000000 36.8280000000 -0.8660254038 -0.5000000000 0.0000000000 63.7879671411 0.0000000000 0.0000000000 -1.0000000000 -19.3063333333 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-11-24 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 4 'Structure model' 1 3 2019-07-17 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' software 3 4 'Structure model' struct_conn 4 5 'Structure model' database_2 5 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -5.4542 _pdbx_refine_tls.origin_y 47.5675 _pdbx_refine_tls.origin_z -0.0128 _pdbx_refine_tls.T[1][1] 0.3425 _pdbx_refine_tls.T[2][2] 0.2241 _pdbx_refine_tls.T[3][3] 0.2648 _pdbx_refine_tls.T[1][2] 0.1400 _pdbx_refine_tls.T[1][3] 0.1315 _pdbx_refine_tls.T[2][3] 0.1029 _pdbx_refine_tls.L[1][1] 1.8209 _pdbx_refine_tls.L[2][2] 3.2456 _pdbx_refine_tls.L[3][3] 9.0040 _pdbx_refine_tls.L[1][2] 0.6730 _pdbx_refine_tls.L[1][3] 0.7118 _pdbx_refine_tls.L[2][3] 1.5726 _pdbx_refine_tls.S[1][1] 0.0492 _pdbx_refine_tls.S[2][2] 0.1048 _pdbx_refine_tls.S[3][3] -0.1539 _pdbx_refine_tls.S[1][2] -0.0874 _pdbx_refine_tls.S[1][3] -0.0162 _pdbx_refine_tls.S[2][3] 0.3783 _pdbx_refine_tls.S[2][1] 0.7635 _pdbx_refine_tls.S[3][1] -0.4502 _pdbx_refine_tls.S[3][2] -0.9648 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 54 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 163 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.5.0102 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? 7 SHELXD . ? ? ? ? phasing ? ? ? 8 autoSHARP . ? ? ? ? phasing ? ? ? 9 # _pdbx_entry_details.entry_id 3K9I _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT (RESIDUES 49-164) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CB _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 TRP _pdbx_validate_rmsd_bond.auth_seq_id_1 162 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CG _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 TRP _pdbx_validate_rmsd_bond.auth_seq_id_2 162 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.635 _pdbx_validate_rmsd_bond.bond_target_value 1.498 _pdbx_validate_rmsd_bond.bond_deviation 0.137 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.018 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 85 ? ? CZ A ARG 85 ? ? NH2 A ARG 85 ? ? 116.44 120.30 -3.86 0.50 N 2 1 CA A TRP 162 ? ? CB A TRP 162 ? ? CG A TRP 162 ? ? 127.07 113.70 13.37 1.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 55 ? ? -88.09 32.20 2 1 ALA A 65 ? ? -65.95 68.30 3 1 SER A 66 ? ? 172.64 148.61 4 1 GLN A 69 ? ? -129.89 -157.61 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 163 ? CG ? A LYS 116 CG 2 1 Y 1 A LYS 163 ? CD ? A LYS 116 CD 3 1 Y 1 A LYS 163 ? CE ? A LYS 116 CE 4 1 Y 1 A LYS 163 ? NZ ? A LYS 116 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A VAL 49 ? A VAL 2 3 1 Y 1 A LEU 50 ? A LEU 3 4 1 Y 1 A GLY 51 ? A GLY 4 5 1 Y 1 A LEU 52 ? A LEU 5 6 1 Y 1 A GLU 53 ? A GLU 6 7 1 Y 1 A ALA 164 ? A ALA 117 #