data_3K9P # _entry.id 3K9P # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.388 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3K9P pdb_00003k9p 10.2210/pdb3k9p/pdb RCSB RCSB055722 ? ? WWPDB D_1000055722 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-09-08 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-03-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3K9P _pdbx_database_status.recvd_initial_deposition_date 2009-10-16 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3K9O _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kang, G.B.' 1 'Ko, S.' 2 'Song, S.M.' 3 'Lee, W.' 4 'Eom, S.H.' 5 # _citation.id primary _citation.title 'Structural basis of E2-25K/UBB+1 interaction leading to proteasome inhibition and neurotoxicity' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 285 _citation.page_first 36070 _citation.page_last 36080 _citation.year 2010 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20826778 _citation.pdbx_database_id_DOI 10.1074/jbc.M110.145219 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ko, S.' 1 ? primary 'Kang, G.B.' 2 ? primary 'Song, S.M.' 3 ? primary 'Lee, J.-G.' 4 ? primary 'Shin, D.Y.' 5 ? primary 'Yun, J.-H.' 6 ? primary 'Sheng, Y.' 7 ? primary 'Cheong, C.' 8 ? primary 'Jeon, Y.H.' 9 ? primary 'Jung, Y.-K.' 10 ? primary 'Arrowsmith, C.H.' 11 ? primary 'Avvakumov, G.V.' 12 ? primary 'Dhe-Paganon, S.' 13 ? primary 'Yoo, Y.J.' 14 ? primary 'Eom, S.H.' 15 ? primary 'Lee, W.' 16 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ubiquitin-conjugating enzyme E2 K' 24094.465 1 6.3.2.19 ? ? ? 2 polymer man Ubiquitin 8859.106 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;Ubiquitin-conjugating enzyme E2-25 kDa, E2(25K), E2-25K, Ubiquitin-protein ligase, Ubiquitin carrier protein, Huntingtin-interacting protein 2, HIP-2 ; # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSHMASMTGGQQMGRGSMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQ TARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVIVALSSKSWDVETATELLLSN ; ;GSHMASMTGGQQMGRGSMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQ TARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVIVALSSKSWDVETATELLLSN ; A ? 2 'polypeptide(L)' no no GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 ALA n 1 6 SER n 1 7 MET n 1 8 THR n 1 9 GLY n 1 10 GLY n 1 11 GLN n 1 12 GLN n 1 13 MET n 1 14 GLY n 1 15 ARG n 1 16 GLY n 1 17 SER n 1 18 MET n 1 19 ALA n 1 20 ASN n 1 21 ILE n 1 22 ALA n 1 23 VAL n 1 24 GLN n 1 25 ARG n 1 26 ILE n 1 27 LYS n 1 28 ARG n 1 29 GLU n 1 30 PHE n 1 31 LYS n 1 32 GLU n 1 33 VAL n 1 34 LEU n 1 35 LYS n 1 36 SER n 1 37 GLU n 1 38 GLU n 1 39 THR n 1 40 SER n 1 41 LYS n 1 42 ASN n 1 43 GLN n 1 44 ILE n 1 45 LYS n 1 46 VAL n 1 47 ASP n 1 48 LEU n 1 49 VAL n 1 50 ASP n 1 51 GLU n 1 52 ASN n 1 53 PHE n 1 54 THR n 1 55 GLU n 1 56 LEU n 1 57 ARG n 1 58 GLY n 1 59 GLU n 1 60 ILE n 1 61 ALA n 1 62 GLY n 1 63 PRO n 1 64 PRO n 1 65 ASP n 1 66 THR n 1 67 PRO n 1 68 TYR n 1 69 GLU n 1 70 GLY n 1 71 GLY n 1 72 ARG n 1 73 TYR n 1 74 GLN n 1 75 LEU n 1 76 GLU n 1 77 ILE n 1 78 LYS n 1 79 ILE n 1 80 PRO n 1 81 GLU n 1 82 THR n 1 83 TYR n 1 84 PRO n 1 85 PHE n 1 86 ASN n 1 87 PRO n 1 88 PRO n 1 89 LYS n 1 90 VAL n 1 91 ARG n 1 92 PHE n 1 93 ILE n 1 94 THR n 1 95 LYS n 1 96 ILE n 1 97 TRP n 1 98 HIS n 1 99 PRO n 1 100 ASN n 1 101 ILE n 1 102 SER n 1 103 SER n 1 104 VAL n 1 105 THR n 1 106 GLY n 1 107 ALA n 1 108 ILE n 1 109 CYS n 1 110 LEU n 1 111 ASP n 1 112 ILE n 1 113 LEU n 1 114 LYS n 1 115 ASP n 1 116 GLN n 1 117 TRP n 1 118 ALA n 1 119 ALA n 1 120 ALA n 1 121 MET n 1 122 THR n 1 123 LEU n 1 124 ARG n 1 125 THR n 1 126 VAL n 1 127 LEU n 1 128 LEU n 1 129 SER n 1 130 LEU n 1 131 GLN n 1 132 ALA n 1 133 LEU n 1 134 LEU n 1 135 ALA n 1 136 ALA n 1 137 ALA n 1 138 GLU n 1 139 PRO n 1 140 ASP n 1 141 ASP n 1 142 PRO n 1 143 GLN n 1 144 ASP n 1 145 ALA n 1 146 VAL n 1 147 VAL n 1 148 ALA n 1 149 ASN n 1 150 GLN n 1 151 TYR n 1 152 LYS n 1 153 GLN n 1 154 ASN n 1 155 PRO n 1 156 GLU n 1 157 MET n 1 158 PHE n 1 159 LYS n 1 160 GLN n 1 161 THR n 1 162 ALA n 1 163 ARG n 1 164 LEU n 1 165 TRP n 1 166 ALA n 1 167 HIS n 1 168 VAL n 1 169 TYR n 1 170 ALA n 1 171 GLY n 1 172 ALA n 1 173 PRO n 1 174 VAL n 1 175 SER n 1 176 SER n 1 177 PRO n 1 178 GLU n 1 179 TYR n 1 180 THR n 1 181 LYS n 1 182 LYS n 1 183 ILE n 1 184 GLU n 1 185 ASN n 1 186 LEU n 1 187 CYS n 1 188 ALA n 1 189 MET n 1 190 GLY n 1 191 PHE n 1 192 ASP n 1 193 ARG n 1 194 ASN n 1 195 ALA n 1 196 VAL n 1 197 ILE n 1 198 VAL n 1 199 ALA n 1 200 LEU n 1 201 SER n 1 202 SER n 1 203 LYS n 1 204 SER n 1 205 TRP n 1 206 ASP n 1 207 VAL n 1 208 GLU n 1 209 THR n 1 210 ALA n 1 211 THR n 1 212 GLU n 1 213 LEU n 1 214 LEU n 1 215 LEU n 1 216 SER n 1 217 ASN n 2 1 GLY n 2 2 SER n 2 3 HIS n 2 4 MET n 2 5 GLN n 2 6 ILE n 2 7 PHE n 2 8 VAL n 2 9 LYS n 2 10 THR n 2 11 LEU n 2 12 THR n 2 13 GLY n 2 14 LYS n 2 15 THR n 2 16 ILE n 2 17 THR n 2 18 LEU n 2 19 GLU n 2 20 VAL n 2 21 GLU n 2 22 PRO n 2 23 SER n 2 24 ASP n 2 25 THR n 2 26 ILE n 2 27 GLU n 2 28 ASN n 2 29 VAL n 2 30 LYS n 2 31 ALA n 2 32 LYS n 2 33 ILE n 2 34 GLN n 2 35 ASP n 2 36 LYS n 2 37 GLU n 2 38 GLY n 2 39 ILE n 2 40 PRO n 2 41 PRO n 2 42 ASP n 2 43 GLN n 2 44 GLN n 2 45 ARG n 2 46 LEU n 2 47 ILE n 2 48 PHE n 2 49 ALA n 2 50 GLY n 2 51 LYS n 2 52 GLN n 2 53 LEU n 2 54 GLU n 2 55 ASP n 2 56 GLY n 2 57 ARG n 2 58 THR n 2 59 LEU n 2 60 SER n 2 61 ASP n 2 62 TYR n 2 63 ASN n 2 64 ILE n 2 65 GLN n 2 66 LYS n 2 67 GLU n 2 68 SER n 2 69 THR n 2 70 LEU n 2 71 HIS n 2 72 LEU n 2 73 VAL n 2 74 LEU n 2 75 ARG n 2 76 LEU n 2 77 ARG n 2 78 GLY n 2 79 GLY n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? human ? 'UBE2K, HIP2, LIG' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? ? human ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -16 ? ? ? A . n A 1 2 SER 2 -15 ? ? ? A . n A 1 3 HIS 3 -14 ? ? ? A . n A 1 4 MET 4 -13 ? ? ? A . n A 1 5 ALA 5 -12 ? ? ? A . n A 1 6 SER 6 -11 ? ? ? A . n A 1 7 MET 7 -10 ? ? ? A . n A 1 8 THR 8 -9 ? ? ? A . n A 1 9 GLY 9 -8 ? ? ? A . n A 1 10 GLY 10 -7 ? ? ? A . n A 1 11 GLN 11 -6 ? ? ? A . n A 1 12 GLN 12 -5 ? ? ? A . n A 1 13 MET 13 -4 ? ? ? A . n A 1 14 GLY 14 -3 ? ? ? A . n A 1 15 ARG 15 -2 ? ? ? A . n A 1 16 GLY 16 -1 ? ? ? A . n A 1 17 SER 17 0 ? ? ? A . n A 1 18 MET 18 1 1 MET MET A . n A 1 19 ALA 19 2 2 ALA ALA A . n A 1 20 ASN 20 3 3 ASN ASN A . n A 1 21 ILE 21 4 4 ILE ILE A . n A 1 22 ALA 22 5 5 ALA ALA A . n A 1 23 VAL 23 6 6 VAL VAL A . n A 1 24 GLN 24 7 7 GLN GLN A . n A 1 25 ARG 25 8 8 ARG ARG A . n A 1 26 ILE 26 9 9 ILE ILE A . n A 1 27 LYS 27 10 10 LYS LYS A . n A 1 28 ARG 28 11 11 ARG ARG A . n A 1 29 GLU 29 12 12 GLU GLU A . n A 1 30 PHE 30 13 13 PHE PHE A . n A 1 31 LYS 31 14 14 LYS LYS A . n A 1 32 GLU 32 15 15 GLU GLU A . n A 1 33 VAL 33 16 16 VAL VAL A . n A 1 34 LEU 34 17 17 LEU LEU A . n A 1 35 LYS 35 18 18 LYS LYS A . n A 1 36 SER 36 19 19 SER SER A . n A 1 37 GLU 37 20 20 GLU GLU A . n A 1 38 GLU 38 21 21 GLU GLU A . n A 1 39 THR 39 22 22 THR THR A . n A 1 40 SER 40 23 23 SER SER A . n A 1 41 LYS 41 24 24 LYS LYS A . n A 1 42 ASN 42 25 25 ASN ASN A . n A 1 43 GLN 43 26 26 GLN GLN A . n A 1 44 ILE 44 27 27 ILE ILE A . n A 1 45 LYS 45 28 28 LYS LYS A . n A 1 46 VAL 46 29 29 VAL VAL A . n A 1 47 ASP 47 30 30 ASP ASP A . n A 1 48 LEU 48 31 31 LEU LEU A . n A 1 49 VAL 49 32 32 VAL VAL A . n A 1 50 ASP 50 33 33 ASP ASP A . n A 1 51 GLU 51 34 34 GLU GLU A . n A 1 52 ASN 52 35 35 ASN ASN A . n A 1 53 PHE 53 36 36 PHE PHE A . n A 1 54 THR 54 37 37 THR THR A . n A 1 55 GLU 55 38 38 GLU GLU A . n A 1 56 LEU 56 39 39 LEU LEU A . n A 1 57 ARG 57 40 40 ARG ARG A . n A 1 58 GLY 58 41 41 GLY GLY A . n A 1 59 GLU 59 42 42 GLU GLU A . n A 1 60 ILE 60 43 43 ILE ILE A . n A 1 61 ALA 61 44 44 ALA ALA A . n A 1 62 GLY 62 45 45 GLY GLY A . n A 1 63 PRO 63 46 46 PRO PRO A . n A 1 64 PRO 64 47 47 PRO PRO A . n A 1 65 ASP 65 48 48 ASP ASP A . n A 1 66 THR 66 49 49 THR THR A . n A 1 67 PRO 67 50 50 PRO PRO A . n A 1 68 TYR 68 51 51 TYR TYR A . n A 1 69 GLU 69 52 52 GLU GLU A . n A 1 70 GLY 70 53 53 GLY GLY A . n A 1 71 GLY 71 54 54 GLY GLY A . n A 1 72 ARG 72 55 55 ARG ARG A . n A 1 73 TYR 73 56 56 TYR TYR A . n A 1 74 GLN 74 57 57 GLN GLN A . n A 1 75 LEU 75 58 58 LEU LEU A . n A 1 76 GLU 76 59 59 GLU GLU A . n A 1 77 ILE 77 60 60 ILE ILE A . n A 1 78 LYS 78 61 61 LYS LYS A . n A 1 79 ILE 79 62 62 ILE ILE A . n A 1 80 PRO 80 63 63 PRO PRO A . n A 1 81 GLU 81 64 64 GLU GLU A . n A 1 82 THR 82 65 65 THR THR A . n A 1 83 TYR 83 66 66 TYR TYR A . n A 1 84 PRO 84 67 67 PRO PRO A . n A 1 85 PHE 85 68 68 PHE PHE A . n A 1 86 ASN 86 69 69 ASN ASN A . n A 1 87 PRO 87 70 70 PRO PRO A . n A 1 88 PRO 88 71 71 PRO PRO A . n A 1 89 LYS 89 72 72 LYS LYS A . n A 1 90 VAL 90 73 73 VAL VAL A . n A 1 91 ARG 91 74 74 ARG ARG A . n A 1 92 PHE 92 75 75 PHE PHE A . n A 1 93 ILE 93 76 76 ILE ILE A . n A 1 94 THR 94 77 77 THR THR A . n A 1 95 LYS 95 78 78 LYS LYS A . n A 1 96 ILE 96 79 79 ILE ILE A . n A 1 97 TRP 97 80 80 TRP TRP A . n A 1 98 HIS 98 81 81 HIS HIS A . n A 1 99 PRO 99 82 82 PRO PRO A . n A 1 100 ASN 100 83 83 ASN ASN A . n A 1 101 ILE 101 84 84 ILE ILE A . n A 1 102 SER 102 85 85 SER SER A . n A 1 103 SER 103 86 86 SER SER A . n A 1 104 VAL 104 87 87 VAL VAL A . n A 1 105 THR 105 88 88 THR THR A . n A 1 106 GLY 106 89 89 GLY GLY A . n A 1 107 ALA 107 90 90 ALA ALA A . n A 1 108 ILE 108 91 91 ILE ILE A . n A 1 109 CYS 109 92 92 CYS CYS A . n A 1 110 LEU 110 93 93 LEU LEU A . n A 1 111 ASP 111 94 94 ASP ASP A . n A 1 112 ILE 112 95 95 ILE ILE A . n A 1 113 LEU 113 96 96 LEU LEU A . n A 1 114 LYS 114 97 97 LYS LYS A . n A 1 115 ASP 115 98 98 ASP ASP A . n A 1 116 GLN 116 99 99 GLN GLN A . n A 1 117 TRP 117 100 100 TRP TRP A . n A 1 118 ALA 118 101 101 ALA ALA A . n A 1 119 ALA 119 102 102 ALA ALA A . n A 1 120 ALA 120 103 103 ALA ALA A . n A 1 121 MET 121 104 104 MET MET A . n A 1 122 THR 122 105 105 THR THR A . n A 1 123 LEU 123 106 106 LEU LEU A . n A 1 124 ARG 124 107 107 ARG ARG A . n A 1 125 THR 125 108 108 THR THR A . n A 1 126 VAL 126 109 109 VAL VAL A . n A 1 127 LEU 127 110 110 LEU LEU A . n A 1 128 LEU 128 111 111 LEU LEU A . n A 1 129 SER 129 112 112 SER SER A . n A 1 130 LEU 130 113 113 LEU LEU A . n A 1 131 GLN 131 114 114 GLN GLN A . n A 1 132 ALA 132 115 115 ALA ALA A . n A 1 133 LEU 133 116 116 LEU LEU A . n A 1 134 LEU 134 117 117 LEU LEU A . n A 1 135 ALA 135 118 118 ALA ALA A . n A 1 136 ALA 136 119 119 ALA ALA A . n A 1 137 ALA 137 120 120 ALA ALA A . n A 1 138 GLU 138 121 121 GLU GLU A . n A 1 139 PRO 139 122 122 PRO PRO A . n A 1 140 ASP 140 123 123 ASP ASP A . n A 1 141 ASP 141 124 124 ASP ASP A . n A 1 142 PRO 142 125 125 PRO PRO A . n A 1 143 GLN 143 126 126 GLN GLN A . n A 1 144 ASP 144 127 127 ASP ASP A . n A 1 145 ALA 145 128 128 ALA ALA A . n A 1 146 VAL 146 129 129 VAL VAL A . n A 1 147 VAL 147 130 130 VAL VAL A . n A 1 148 ALA 148 131 131 ALA ALA A . n A 1 149 ASN 149 132 132 ASN ASN A . n A 1 150 GLN 150 133 133 GLN GLN A . n A 1 151 TYR 151 134 134 TYR TYR A . n A 1 152 LYS 152 135 135 LYS LYS A . n A 1 153 GLN 153 136 136 GLN GLN A . n A 1 154 ASN 154 137 137 ASN ASN A . n A 1 155 PRO 155 138 138 PRO PRO A . n A 1 156 GLU 156 139 139 GLU GLU A . n A 1 157 MET 157 140 140 MET MET A . n A 1 158 PHE 158 141 141 PHE PHE A . n A 1 159 LYS 159 142 142 LYS LYS A . n A 1 160 GLN 160 143 143 GLN GLN A . n A 1 161 THR 161 144 144 THR THR A . n A 1 162 ALA 162 145 145 ALA ALA A . n A 1 163 ARG 163 146 146 ARG ARG A . n A 1 164 LEU 164 147 147 LEU LEU A . n A 1 165 TRP 165 148 148 TRP TRP A . n A 1 166 ALA 166 149 149 ALA ALA A . n A 1 167 HIS 167 150 150 HIS HIS A . n A 1 168 VAL 168 151 151 VAL VAL A . n A 1 169 TYR 169 152 152 TYR TYR A . n A 1 170 ALA 170 153 153 ALA ALA A . n A 1 171 GLY 171 154 154 GLY GLY A . n A 1 172 ALA 172 155 155 ALA ALA A . n A 1 173 PRO 173 156 156 PRO PRO A . n A 1 174 VAL 174 157 157 VAL VAL A . n A 1 175 SER 175 158 158 SER SER A . n A 1 176 SER 176 159 159 SER SER A . n A 1 177 PRO 177 160 160 PRO PRO A . n A 1 178 GLU 178 161 161 GLU GLU A . n A 1 179 TYR 179 162 162 TYR TYR A . n A 1 180 THR 180 163 163 THR THR A . n A 1 181 LYS 181 164 164 LYS LYS A . n A 1 182 LYS 182 165 165 LYS LYS A . n A 1 183 ILE 183 166 166 ILE ILE A . n A 1 184 GLU 184 167 167 GLU GLU A . n A 1 185 ASN 185 168 168 ASN ASN A . n A 1 186 LEU 186 169 169 LEU LEU A . n A 1 187 CYS 187 170 170 CYS CYS A . n A 1 188 ALA 188 171 171 ALA ALA A . n A 1 189 MET 189 172 172 MET MET A . n A 1 190 GLY 190 173 173 GLY GLY A . n A 1 191 PHE 191 174 174 PHE PHE A . n A 1 192 ASP 192 175 175 ASP ASP A . n A 1 193 ARG 193 176 176 ARG ARG A . n A 1 194 ASN 194 177 177 ASN ASN A . n A 1 195 ALA 195 178 178 ALA ALA A . n A 1 196 VAL 196 179 179 VAL VAL A . n A 1 197 ILE 197 180 180 ILE ILE A . n A 1 198 VAL 198 181 181 VAL VAL A . n A 1 199 ALA 199 182 182 ALA ALA A . n A 1 200 LEU 200 183 183 LEU LEU A . n A 1 201 SER 201 184 184 SER SER A . n A 1 202 SER 202 185 185 SER SER A . n A 1 203 LYS 203 186 186 LYS LYS A . n A 1 204 SER 204 187 187 SER SER A . n A 1 205 TRP 205 188 188 TRP TRP A . n A 1 206 ASP 206 189 189 ASP ASP A . n A 1 207 VAL 207 190 190 VAL VAL A . n A 1 208 GLU 208 191 191 GLU GLU A . n A 1 209 THR 209 192 192 THR THR A . n A 1 210 ALA 210 193 193 ALA ALA A . n A 1 211 THR 211 194 194 THR THR A . n A 1 212 GLU 212 195 195 GLU GLU A . n A 1 213 LEU 213 196 196 LEU LEU A . n A 1 214 LEU 214 197 197 LEU LEU A . n A 1 215 LEU 215 198 198 LEU LEU A . n A 1 216 SER 216 199 199 SER SER A . n A 1 217 ASN 217 200 ? ? ? A . n B 2 1 GLY 1 -2 ? ? ? B . n B 2 2 SER 2 -1 ? ? ? B . n B 2 3 HIS 3 0 ? ? ? B . n B 2 4 MET 4 1 1 MET MET B . n B 2 5 GLN 5 2 2 GLN GLN B . n B 2 6 ILE 6 3 3 ILE ILE B . n B 2 7 PHE 7 4 4 PHE PHE B . n B 2 8 VAL 8 5 5 VAL VAL B . n B 2 9 LYS 9 6 6 LYS LYS B . n B 2 10 THR 10 7 7 THR THR B . n B 2 11 LEU 11 8 8 LEU LEU B . n B 2 12 THR 12 9 9 THR THR B . n B 2 13 GLY 13 10 10 GLY GLY B . n B 2 14 LYS 14 11 11 LYS LYS B . n B 2 15 THR 15 12 12 THR THR B . n B 2 16 ILE 16 13 13 ILE ILE B . n B 2 17 THR 17 14 14 THR THR B . n B 2 18 LEU 18 15 15 LEU LEU B . n B 2 19 GLU 19 16 16 GLU GLU B . n B 2 20 VAL 20 17 17 VAL VAL B . n B 2 21 GLU 21 18 18 GLU GLU B . n B 2 22 PRO 22 19 19 PRO PRO B . n B 2 23 SER 23 20 20 SER SER B . n B 2 24 ASP 24 21 21 ASP ASP B . n B 2 25 THR 25 22 22 THR THR B . n B 2 26 ILE 26 23 23 ILE ILE B . n B 2 27 GLU 27 24 24 GLU GLU B . n B 2 28 ASN 28 25 25 ASN ASN B . n B 2 29 VAL 29 26 26 VAL VAL B . n B 2 30 LYS 30 27 27 LYS LYS B . n B 2 31 ALA 31 28 28 ALA ALA B . n B 2 32 LYS 32 29 29 LYS LYS B . n B 2 33 ILE 33 30 30 ILE ILE B . n B 2 34 GLN 34 31 31 GLN GLN B . n B 2 35 ASP 35 32 32 ASP ASP B . n B 2 36 LYS 36 33 33 LYS LYS B . n B 2 37 GLU 37 34 34 GLU GLU B . n B 2 38 GLY 38 35 35 GLY GLY B . n B 2 39 ILE 39 36 36 ILE ILE B . n B 2 40 PRO 40 37 37 PRO PRO B . n B 2 41 PRO 41 38 38 PRO PRO B . n B 2 42 ASP 42 39 39 ASP ASP B . n B 2 43 GLN 43 40 40 GLN GLN B . n B 2 44 GLN 44 41 41 GLN GLN B . n B 2 45 ARG 45 42 42 ARG ARG B . n B 2 46 LEU 46 43 43 LEU LEU B . n B 2 47 ILE 47 44 44 ILE ILE B . n B 2 48 PHE 48 45 45 PHE PHE B . n B 2 49 ALA 49 46 46 ALA ALA B . n B 2 50 GLY 50 47 47 GLY GLY B . n B 2 51 LYS 51 48 48 LYS LYS B . n B 2 52 GLN 52 49 49 GLN GLN B . n B 2 53 LEU 53 50 50 LEU LEU B . n B 2 54 GLU 54 51 51 GLU GLU B . n B 2 55 ASP 55 52 52 ASP ASP B . n B 2 56 GLY 56 53 53 GLY GLY B . n B 2 57 ARG 57 54 54 ARG ARG B . n B 2 58 THR 58 55 55 THR THR B . n B 2 59 LEU 59 56 56 LEU LEU B . n B 2 60 SER 60 57 57 SER SER B . n B 2 61 ASP 61 58 58 ASP ASP B . n B 2 62 TYR 62 59 59 TYR TYR B . n B 2 63 ASN 63 60 60 ASN ASN B . n B 2 64 ILE 64 61 61 ILE ILE B . n B 2 65 GLN 65 62 62 GLN GLN B . n B 2 66 LYS 66 63 63 LYS LYS B . n B 2 67 GLU 67 64 64 GLU GLU B . n B 2 68 SER 68 65 65 SER SER B . n B 2 69 THR 69 66 66 THR THR B . n B 2 70 LEU 70 67 67 LEU LEU B . n B 2 71 HIS 71 68 68 HIS HIS B . n B 2 72 LEU 72 69 69 LEU LEU B . n B 2 73 VAL 73 70 70 VAL VAL B . n B 2 74 LEU 74 71 71 LEU LEU B . n B 2 75 ARG 75 72 72 ARG ALA B . n B 2 76 LEU 76 73 ? ? ? B . n B 2 77 ARG 77 74 ? ? ? B . n B 2 78 GLY 78 75 ? ? ? B . n B 2 79 GLY 79 76 ? ? ? B . n # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B ARG 72 ? CG ? B ARG 75 CG 2 1 Y 1 B ARG 72 ? CD ? B ARG 75 CD 3 1 Y 1 B ARG 72 ? NE ? B ARG 75 NE 4 1 Y 1 B ARG 72 ? CZ ? B ARG 75 CZ 5 1 Y 1 B ARG 72 ? NH1 ? B ARG 75 NH1 6 1 Y 1 B ARG 72 ? NH2 ? B ARG 75 NH2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 MOLREP phasing . ? 2 CNS refinement 1.1 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _cell.entry_id 3K9P _cell.length_a 43.554 _cell.length_b 50.974 _cell.length_c 63.906 _cell.angle_alpha 90.00 _cell.angle_beta 102.62 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3K9P _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3K9P _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.10 _exptl_crystal.density_percent_sol 41.45 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '100mM HEPES-NaOH (pH 7.5), 25% (w/v) PEG 3350, 50mM Sodium Fluoride, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2008-02-27 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'DOUBLE CRYSTAL MONOCHROMATOR' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PAL/PLS BEAMLINE 4A' _diffrn_source.pdbx_synchrotron_site PAL/PLS _diffrn_source.pdbx_synchrotron_beamline 4A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0000 # _reflns.entry_id 3K9P _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.8 _reflns.number_obs 6522 _reflns.number_all 6522 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.8 _reflns_shell.d_res_low 2.85 _reflns_shell.percent_possible_all 99.4 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3K9P _refine.ls_number_reflns_obs 6522 _refine.ls_number_reflns_all 6522 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 42.50 _refine.ls_d_res_high 2.8 _refine.ls_percent_reflns_obs 94.700 _refine.ls_R_factor_obs 0.232 _refine.ls_R_factor_all 0.282 _refine.ls_R_factor_R_work 0.232 _refine.ls_R_factor_R_free 0.296 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.300 _refine.ls_number_reflns_R_free 711 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 47.289 _refine.aniso_B[1][1] -16.326 _refine.aniso_B[2][2] 23.281 _refine.aniso_B[3][3] -6.955 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] -31.012 _refine.aniso_B[2][3] 0.000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 82.78 _refine.B_iso_min 19.60 _refine.occupancy_max 1.00 _refine.occupancy_min 1.00 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2137 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2137 _refine_hist.d_res_high 2.8 _refine_hist.d_res_low 42.50 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.010 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.536 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 2.8 _refine_ls_shell.d_res_low 2.97 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.329 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.434 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 844 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 CNS_TOPPAR:protein_rep.param ? 'X-RAY DIFFRACTION' 2 CNS_TOPPAR:water_rep.param ? # _database_PDB_matrix.entry_id 3K9P _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3K9P _struct.title 'The crystal structure of E2-25K and ubiquitin complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3K9P _struct_keywords.pdbx_keywords 'LIGASE/SIGNALING PROTEIN' _struct_keywords.text ;E2-25K, ubiquitin, complex structure, ATP-binding, Isopeptide bond, Ligase, Nucleotide-binding, Ubl conjugation pathway, Nucleus, Phosphoprotein, LIGASE-SIGNALING PROTEIN complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP UBE2K_HUMAN P61086 1 ;MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSP EYTKKIENLCAMGFDRNAVIVALSSKSWDVETATELLLSN ; 1 ? 2 UNP UBIQ_HUMAN P62988 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3K9P A 18 ? 217 ? P61086 1 ? 200 ? 1 200 2 2 3K9P B 4 ? 79 ? P62988 1 ? 76 ? 1 76 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3K9P GLY A 1 ? UNP P61086 ? ? 'expression tag' -16 1 1 3K9P SER A 2 ? UNP P61086 ? ? 'expression tag' -15 2 1 3K9P HIS A 3 ? UNP P61086 ? ? 'expression tag' -14 3 1 3K9P MET A 4 ? UNP P61086 ? ? 'expression tag' -13 4 1 3K9P ALA A 5 ? UNP P61086 ? ? 'expression tag' -12 5 1 3K9P SER A 6 ? UNP P61086 ? ? 'expression tag' -11 6 1 3K9P MET A 7 ? UNP P61086 ? ? 'expression tag' -10 7 1 3K9P THR A 8 ? UNP P61086 ? ? 'expression tag' -9 8 1 3K9P GLY A 9 ? UNP P61086 ? ? 'expression tag' -8 9 1 3K9P GLY A 10 ? UNP P61086 ? ? 'expression tag' -7 10 1 3K9P GLN A 11 ? UNP P61086 ? ? 'expression tag' -6 11 1 3K9P GLN A 12 ? UNP P61086 ? ? 'expression tag' -5 12 1 3K9P MET A 13 ? UNP P61086 ? ? 'expression tag' -4 13 1 3K9P GLY A 14 ? UNP P61086 ? ? 'expression tag' -3 14 1 3K9P ARG A 15 ? UNP P61086 ? ? 'expression tag' -2 15 1 3K9P GLY A 16 ? UNP P61086 ? ? 'expression tag' -1 16 1 3K9P SER A 17 ? UNP P61086 ? ? 'expression tag' 0 17 2 3K9P GLY B 1 ? UNP P62988 ? ? 'expression tag' -2 18 2 3K9P SER B 2 ? UNP P62988 ? ? 'expression tag' -1 19 2 3K9P HIS B 3 ? UNP P62988 ? ? 'expression tag' 0 20 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 software_defined_assembly PISA monomeric 1 3 software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B 2 1 A 3 1 B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 22 ? LYS A 35 ? ALA A 5 LYS A 18 1 ? 14 HELX_P HELX_P2 2 SER A 36 ? LYS A 41 ? SER A 19 LYS A 24 1 ? 6 HELX_P HELX_P3 3 LEU A 110 ? LYS A 114 ? LEU A 93 LYS A 97 5 ? 5 HELX_P HELX_P4 4 THR A 122 ? ALA A 136 ? THR A 105 ALA A 119 1 ? 15 HELX_P HELX_P5 5 ASP A 144 ? ASN A 154 ? ASP A 127 ASN A 137 1 ? 11 HELX_P HELX_P6 6 ASN A 154 ? GLY A 171 ? ASN A 137 GLY A 154 1 ? 18 HELX_P HELX_P7 7 SER A 176 ? ALA A 188 ? SER A 159 ALA A 171 1 ? 13 HELX_P HELX_P8 8 ASP A 192 ? LYS A 203 ? ASP A 175 LYS A 186 1 ? 12 HELX_P HELX_P9 9 ASP A 206 ? LEU A 214 ? ASP A 189 LEU A 197 1 ? 9 HELX_P HELX_P10 10 THR B 25 ? GLY B 38 ? THR B 22 GLY B 35 1 ? 14 HELX_P HELX_P11 11 PRO B 40 ? GLN B 44 ? PRO B 37 GLN B 41 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 44 ? LEU A 48 ? ILE A 27 LEU A 31 A 2 GLU A 55 ? ALA A 61 ? GLU A 38 ALA A 44 A 3 ARG A 72 ? LYS A 78 ? ARG A 55 LYS A 61 A 4 LYS A 89 ? PHE A 92 ? LYS A 72 PHE A 75 B 1 THR B 15 ? GLU B 19 ? THR B 12 GLU B 16 B 2 GLN B 5 ? THR B 10 ? GLN B 2 THR B 7 B 3 THR B 69 ? LEU B 72 ? THR B 66 LEU B 69 B 4 LEU B 46 ? ILE B 47 ? LEU B 43 ILE B 44 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ASP A 47 ? N ASP A 30 O ARG A 57 ? O ARG A 40 A 2 3 N GLY A 58 ? N GLY A 41 O LEU A 75 ? O LEU A 58 A 3 4 N GLU A 76 ? N GLU A 59 O ARG A 91 ? O ARG A 74 B 1 2 O ILE B 16 ? O ILE B 13 N VAL B 8 ? N VAL B 5 B 2 3 N PHE B 7 ? N PHE B 4 O LEU B 70 ? O LEU B 67 B 3 4 O HIS B 71 ? O HIS B 68 N ILE B 47 ? N ILE B 44 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 C _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 GLU _pdbx_validate_rmsd_angle.auth_seq_id_1 121 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 N _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 PRO _pdbx_validate_rmsd_angle.auth_seq_id_2 122 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CA _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 PRO _pdbx_validate_rmsd_angle.auth_seq_id_3 122 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 128.71 _pdbx_validate_rmsd_angle.angle_target_value 119.30 _pdbx_validate_rmsd_angle.angle_deviation 9.41 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.50 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ILE A 4 ? ? -35.74 -88.24 2 1 GLN A 7 ? ? -111.73 68.89 3 1 ARG A 8 ? ? -173.43 -45.76 4 1 PHE A 36 ? ? 79.86 46.60 5 1 TYR A 66 ? ? -66.15 -83.67 6 1 VAL A 87 ? ? -140.59 20.60 7 1 THR A 88 ? ? -152.92 -21.01 8 1 LYS A 97 ? ? -129.27 -107.50 9 1 GLN A 99 ? ? -70.88 20.88 10 1 ALA A 102 ? ? -49.60 -77.52 11 1 ALA A 103 ? ? -89.61 49.68 12 1 GLN A 126 ? ? -132.03 -32.25 13 1 ASN A 137 ? ? 177.11 55.40 14 1 PRO A 138 ? ? -45.08 -17.65 15 1 PRO A 156 ? ? -61.20 -132.26 16 1 LEU A 198 ? ? -111.88 76.09 17 1 ASP B 39 ? ? -48.55 -12.32 18 1 ASP B 52 ? ? -37.66 -28.50 19 1 ASN B 60 ? ? 71.90 37.13 20 1 GLU B 64 ? ? 76.29 -2.96 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -16 ? A GLY 1 2 1 Y 1 A SER -15 ? A SER 2 3 1 Y 1 A HIS -14 ? A HIS 3 4 1 Y 1 A MET -13 ? A MET 4 5 1 Y 1 A ALA -12 ? A ALA 5 6 1 Y 1 A SER -11 ? A SER 6 7 1 Y 1 A MET -10 ? A MET 7 8 1 Y 1 A THR -9 ? A THR 8 9 1 Y 1 A GLY -8 ? A GLY 9 10 1 Y 1 A GLY -7 ? A GLY 10 11 1 Y 1 A GLN -6 ? A GLN 11 12 1 Y 1 A GLN -5 ? A GLN 12 13 1 Y 1 A MET -4 ? A MET 13 14 1 Y 1 A GLY -3 ? A GLY 14 15 1 Y 1 A ARG -2 ? A ARG 15 16 1 Y 1 A GLY -1 ? A GLY 16 17 1 Y 1 A SER 0 ? A SER 17 18 1 Y 1 A ASN 200 ? A ASN 217 19 1 Y 1 B GLY -2 ? B GLY 1 20 1 Y 1 B SER -1 ? B SER 2 21 1 Y 1 B HIS 0 ? B HIS 3 22 1 Y 1 B LEU 73 ? B LEU 76 23 1 Y 1 B ARG 74 ? B ARG 77 24 1 Y 1 B GLY 75 ? B GLY 78 25 1 Y 1 B GLY 76 ? B GLY 79 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # _atom_sites.entry_id 3K9P _atom_sites.fract_transf_matrix[1][1] 0.022960 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005141 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019618 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016035 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_