HEADER STRUCTURAL PROTEIN 21-OCT-09 3KCP TITLE CRYSTAL STRUCTURE OF INTERACTING CLOSTRIDIUM THERMOCELLUM MULTIMODULAR TITLE 2 COMPONENTS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULOSOMAL-SCAFFOLDING PROTEIN A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: COHESIN 9 AND DOCKERIN 1-2 DOMAINS: UNP RESIDUES 1542-1853; COMPND 5 SYNONYM: CELLULOSOMAL GLYCOPROTEIN S1/SL, CELLULOSE-INTEGRATING COMPND 6 PROTEIN A, COHESIN; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CELLULOSOME ANCHORING PROTEIN, COHESIN REGION; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 27-200; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM THERMOCELLUM ATCC 27405; SOURCE 3 ORGANISM_TAXID: 203119; SOURCE 4 STRAIN: ATCC 27405 / DSM 1237; SOURCE 5 GENE: CIPA, CTHE_3077; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: CLOSTRIDIUM THERMOCELLUM ATCC 27405; SOURCE 10 ORGANISM_TAXID: 203119; SOURCE 11 STRAIN: ATCC 27405 / DSM 1237; SOURCE 12 GENE: CTHE_1307, SDBA; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COHESIN, DOCKERIN, X-MODULE, CELLULOSOME, CARBOHYDRATE METABOLISM, KEYWDS 2 CELL WALL BIOGENESIS/DEGRADATION, CELLULOSE DEGRADATION, KEYWDS 3 GLYCOPROTEIN, POLYSACCHARIDE DEGRADATION, SECRETED, STRUCTURAL KEYWDS 4 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.J.ADAMS,M.A.CURRIE,E.A.BAYER,Z.JIA,S.P.SMITH REVDAT 3 21-FEB-24 3KCP 1 REMARK SEQADV LINK REVDAT 2 02-MAR-10 3KCP 1 JRNL REVDAT 1 09-FEB-10 3KCP 0 JRNL AUTH J.J.ADAMS,M.A.CURRIE,S.ALI,E.A.BAYER,Z.JIA,S.P.SMITH JRNL TITL INSIGHTS INTO HIGHER-ORDER ORGANIZATION OF THE CELLULOSOME JRNL TITL 2 REVEALED BY A DISSECT-AND-BUILD APPROACH: CRYSTAL STRUCTURE JRNL TITL 3 OF INTERACTING CLOSTRIDIUM THERMOCELLUM MULTIMODULAR JRNL TITL 4 COMPONENTS JRNL REF J.MOL.BIOL. V. 396 833 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20070943 JRNL DOI 10.1016/J.JMB.2010.01.015 REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 39350 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2087 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.94 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.99 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2513 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.17 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 149 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3542 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 244 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.161 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.142 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.105 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.656 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3609 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4907 ; 1.679 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 464 ; 6.333 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 152 ;37.213 ;25.724 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 592 ;14.674 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;17.625 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 571 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2719 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1630 ; 0.213 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2512 ; 0.314 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 263 ; 0.166 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 7 ; 0.123 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 58 ; 0.231 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.150 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2366 ; 1.145 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3742 ; 1.792 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1405 ; 2.863 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1165 ; 4.207 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3KCP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055826. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9179 REMARK 200 MONOCHROMATOR : HORIZONTAL BENT SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41456 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 42.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : 0.06600 REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.42400 REMARK 200 R SYM FOR SHELL (I) : 0.42400 REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES, 200 MM AMMONIUM SULFATE, REMARK 280 30% W/V PEG 3350, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 84.98850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.00950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 84.98850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.00950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS THE ASYMMETRIC UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 THR A 3 REMARK 465 ILE A 4 REMARK 465 THR A 5 REMARK 465 PRO A 6 REMARK 465 ASN A 7 REMARK 465 ASP A 311 REMARK 465 ALA A 312 REMARK 465 GLN A 313 REMARK 465 LEU A 314 REMARK 465 GLU A 315 REMARK 465 HIS A 316 REMARK 465 HIS A 317 REMARK 465 HIS A 318 REMARK 465 HIS A 319 REMARK 465 HIS A 320 REMARK 465 HIS A 321 REMARK 465 MET B 423 REMARK 465 ARG B 424 REMARK 465 GLY B 425 REMARK 465 SER B 426 REMARK 465 HIS B 427 REMARK 465 HIS B 428 REMARK 465 HIS B 429 REMARK 465 HIS B 430 REMARK 465 HIS B 431 REMARK 465 HIS B 432 REMARK 465 THR B 433 REMARK 465 ASP B 434 REMARK 465 LEU B 435 REMARK 465 ARG B 436 REMARK 465 ALA B 437 REMARK 465 ASP B 438 REMARK 465 LYS B 439 REMARK 465 ALA B 440 REMARK 465 LEU B 604 REMARK 465 GLY B 605 REMARK 465 ASP B 606 REMARK 465 GLU B 607 REMARK 465 PRO B 608 REMARK 465 TYR B 609 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C TYR A 310 O HOH A 462 1.64 REMARK 500 O HOH A 463 O HOH A 466 2.11 REMARK 500 O HOH B 223 O HOH B 236 2.13 REMARK 500 NH1 ARG B 504 O LEU B 507 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 89 CB GLU A 89 CG 0.164 REMARK 500 CYS A 269 CB CYS A 269 SG -0.117 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 449 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG B 504 NE - CZ - NH1 ANGL. DEV. = -4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 221 -9.69 82.57 REMARK 500 ASP A 255 19.56 -142.31 REMARK 500 ARG A 287 29.99 48.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 702 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 251 OD1 REMARK 620 2 VAL A 253 O 74.1 REMARK 620 3 ASP A 255 OD1 87.5 83.9 REMARK 620 4 SER A 257 O 85.8 154.9 80.3 REMARK 620 5 ASP A 262 OD1 104.2 81.7 158.1 118.5 REMARK 620 6 ASP A 262 OD2 126.8 130.0 134.3 74.3 50.9 REMARK 620 7 HOH A 346 O 154.4 83.4 78.0 111.9 84.0 77.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 284 OD1 REMARK 620 2 ASN A 286 OD1 88.2 REMARK 620 3 ASN A 288 OD1 89.9 76.3 REMARK 620 4 ALA A 290 O 84.6 157.3 82.1 REMARK 620 5 ASP A 295 OD1 95.4 76.7 152.3 125.4 REMARK 620 6 ASP A 295 OD2 107.8 127.2 149.7 75.5 52.5 REMARK 620 7 HOH A 345 O 172.0 87.3 82.6 97.1 90.0 80.2 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 703 DBREF 3KCP A 2 313 UNP Q06851 CIPA_CLOTH 1542 1853 DBREF 3KCP B 436 609 UNP A3DF10 A3DF10_CLOTH 27 200 SEQADV 3KCP MET A 1 UNP Q06851 EXPRESSION TAG SEQADV 3KCP LEU A 314 UNP Q06851 EXPRESSION TAG SEQADV 3KCP GLU A 315 UNP Q06851 EXPRESSION TAG SEQADV 3KCP HIS A 316 UNP Q06851 EXPRESSION TAG SEQADV 3KCP HIS A 317 UNP Q06851 EXPRESSION TAG SEQADV 3KCP HIS A 318 UNP Q06851 EXPRESSION TAG SEQADV 3KCP HIS A 319 UNP Q06851 EXPRESSION TAG SEQADV 3KCP HIS A 320 UNP Q06851 EXPRESSION TAG SEQADV 3KCP HIS A 321 UNP Q06851 EXPRESSION TAG SEQADV 3KCP MET B 423 UNP A3DF10 EXPRESSION TAG SEQADV 3KCP ARG B 424 UNP A3DF10 EXPRESSION TAG SEQADV 3KCP GLY B 425 UNP A3DF10 EXPRESSION TAG SEQADV 3KCP SER B 426 UNP A3DF10 EXPRESSION TAG SEQADV 3KCP HIS B 427 UNP A3DF10 EXPRESSION TAG SEQADV 3KCP HIS B 428 UNP A3DF10 EXPRESSION TAG SEQADV 3KCP HIS B 429 UNP A3DF10 EXPRESSION TAG SEQADV 3KCP HIS B 430 UNP A3DF10 EXPRESSION TAG SEQADV 3KCP HIS B 431 UNP A3DF10 EXPRESSION TAG SEQADV 3KCP HIS B 432 UNP A3DF10 EXPRESSION TAG SEQADV 3KCP THR B 433 UNP A3DF10 EXPRESSION TAG SEQADV 3KCP ASP B 434 UNP A3DF10 EXPRESSION TAG SEQADV 3KCP LEU B 435 UNP A3DF10 EXPRESSION TAG SEQRES 1 A 321 MET PRO THR ILE THR PRO ASN LYS LEU THR LEU LYS ILE SEQRES 2 A 321 GLY ARG ALA GLU GLY ARG PRO GLY ASP THR VAL GLU ILE SEQRES 3 A 321 PRO VAL ASN LEU TYR GLY VAL PRO GLN LYS GLY ILE ALA SEQRES 4 A 321 SER GLY ASP PHE VAL VAL SER TYR ASP PRO ASN VAL LEU SEQRES 5 A 321 GLU ILE ILE GLU ILE GLU PRO GLY GLU LEU ILE VAL ASP SEQRES 6 A 321 PRO ASN PRO THR LYS SER PHE ASP THR ALA VAL TYR PRO SEQRES 7 A 321 ASP ARG LYS MET ILE VAL PHE LEU PHE ALA GLU ASP SER SEQRES 8 A 321 GLY THR GLY ALA TYR ALA ILE THR GLU ASP GLY VAL PHE SEQRES 9 A 321 ALA THR ILE VAL ALA LYS VAL LYS GLU GLY ALA PRO GLU SEQRES 10 A 321 GLY PHE SER ALA ILE GLU ILE SER GLU PHE GLY ALA PHE SEQRES 11 A 321 ALA ASP ASN ASP LEU VAL GLU VAL GLU THR ASP LEU ILE SEQRES 12 A 321 ASN GLY GLY VAL LEU VAL THR ASN LYS PRO VAL ILE GLU SEQRES 13 A 321 GLY TYR LYS VAL SER GLY TYR ILE LEU PRO ASP PHE SER SEQRES 14 A 321 PHE ASP ALA THR VAL ALA PRO LEU VAL LYS ALA GLY PHE SEQRES 15 A 321 LYS VAL GLU ILE VAL GLY THR GLU LEU TYR ALA VAL THR SEQRES 16 A 321 ASP ALA ASN GLY TYR PHE GLU ILE THR GLY VAL PRO ALA SEQRES 17 A 321 ASN ALA SER GLY TYR THR LEU LYS ILE SER ARG ALA THR SEQRES 18 A 321 TYR LEU ASP ARG VAL ILE ALA ASN VAL VAL VAL THR GLY SEQRES 19 A 321 ASP THR SER VAL SER THR SER GLN ALA PRO ILE MET MET SEQRES 20 A 321 TRP VAL GLY ASP ILE VAL LYS ASP ASN SER ILE ASN LEU SEQRES 21 A 321 LEU ASP VAL ALA GLU VAL ILE ARG CYS PHE ASN ALA THR SEQRES 22 A 321 LYS GLY SER ALA ASN TYR VAL GLU GLU LEU ASP ILE ASN SEQRES 23 A 321 ARG ASN GLY ALA ILE ASN MET GLN ASP ILE MET ILE VAL SEQRES 24 A 321 HIS LYS HIS PHE GLY ALA THR SER SER ASP TYR ASP ALA SEQRES 25 A 321 GLN LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 187 MET ARG GLY SER HIS HIS HIS HIS HIS HIS THR ASP LEU SEQRES 2 B 187 ARG ALA ASP LYS ALA SER SER ILE GLU LEU LYS PHE ASP SEQRES 3 B 187 ARG ASN LYS GLY GLU VAL GLY ASP ILE LEU ILE GLY THR SEQRES 4 B 187 VAL ARG ILE ASN ASN ILE LYS ASN PHE ALA GLY PHE GLN SEQRES 5 B 187 VAL ASN ILE VAL TYR ASP PRO LYS VAL LEU MET ALA VAL SEQRES 6 B 187 ASP PRO GLU THR GLY LYS GLU PHE THR SER SER THR PHE SEQRES 7 B 187 PRO PRO GLY ARG THR VAL LEU LYS ASN ASN ALA TYR GLY SEQRES 8 B 187 PRO ILE GLN ILE ALA ASP ASN ASP PRO GLU LYS GLY ILE SEQRES 9 B 187 LEU ASN PHE ALA LEU ALA TYR SER TYR ILE ALA GLY TYR SEQRES 10 B 187 LYS GLU THR GLY VAL ALA GLU GLU SER GLY ILE ILE ALA SEQRES 11 B 187 LYS ILE GLY PHE LYS ILE LEU GLN LYS LYS SER THR ALA SEQRES 12 B 187 VAL LYS PHE GLN ASP THR LEU SER MET PRO GLY ALA ILE SEQRES 13 B 187 SER GLY THR GLN LEU PHE ASP TRP ASP GLY GLU VAL ILE SEQRES 14 B 187 THR GLY TYR GLU VAL ILE GLN PRO ASP VAL LEU SER LEU SEQRES 15 B 187 GLY ASP GLU PRO TYR HET CA A 701 1 HET CA A 702 1 HET CL A 703 1 HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION FORMUL 3 CA 2(CA 2+) FORMUL 5 CL CL 1- FORMUL 6 HOH *244(H2 O) HELIX 1 1 ASN A 67 LYS A 70 5 4 HELIX 2 2 PRO A 78 ARG A 80 5 3 HELIX 3 3 VAL A 174 ALA A 180 1 7 HELIX 4 4 ASN A 259 ARG A 268 1 10 HELIX 5 5 VAL A 280 ASP A 284 5 5 HELIX 6 6 ASN A 292 LYS A 301 1 10 HELIX 7 7 THR A 306 TYR A 310 5 5 HELIX 8 8 ASN B 509 TYR B 512 5 4 HELIX 9 9 ASP B 521 LYS B 524 5 4 HELIX 10 10 TYR B 535 GLY B 543 1 9 SHEET 1 A 5 LEU A 52 PRO A 59 0 SHEET 2 A 5 GLY A 102 VAL A 111 -1 O LYS A 110 N GLU A 53 SHEET 3 A 5 THR A 23 TYR A 31 -1 N VAL A 24 O ALA A 109 SHEET 4 A 5 THR A 10 ILE A 13 -1 N LYS A 12 O ASN A 29 SHEET 5 A 5 ASP A 141 ILE A 143 1 O ILE A 143 N ILE A 13 SHEET 1 B 6 ARG A 15 GLY A 18 0 SHEET 2 B 6 GLY A 145 VAL A 149 1 O LEU A 148 N ALA A 16 SHEET 3 B 6 GLY A 118 ALA A 131 -1 N GLY A 118 O VAL A 149 SHEET 4 B 6 SER A 40 SER A 46 -1 N VAL A 44 O GLU A 126 SHEET 5 B 6 MET A 82 ALA A 88 -1 O PHE A 85 N PHE A 43 SHEET 6 B 6 PHE A 72 TYR A 77 -1 N TYR A 77 O MET A 82 SHEET 1 C 4 ARG A 15 GLY A 18 0 SHEET 2 C 4 GLY A 145 VAL A 149 1 O LEU A 148 N ALA A 16 SHEET 3 C 4 GLY A 118 ALA A 131 -1 N GLY A 118 O VAL A 149 SHEET 4 C 4 GLU A 137 VAL A 138 -1 O VAL A 138 N PHE A 130 SHEET 1 D 3 TYR A 200 VAL A 206 0 SHEET 2 D 3 TYR A 158 PRO A 166 -1 N TYR A 158 O VAL A 206 SHEET 3 D 3 THR A 236 SER A 237 1 O THR A 236 N LYS A 159 SHEET 1 E 3 TYR A 200 VAL A 206 0 SHEET 2 E 3 TYR A 158 PRO A 166 -1 N TYR A 158 O VAL A 206 SHEET 3 E 3 ILE A 245 MET A 247 1 O ILE A 245 N TYR A 163 SHEET 1 F 4 TYR A 192 VAL A 194 0 SHEET 2 F 4 LYS A 183 ILE A 186 -1 N VAL A 184 O ALA A 193 SHEET 3 F 4 ASN A 209 SER A 218 -1 O SER A 218 N LYS A 183 SHEET 4 F 4 ARG A 225 VAL A 232 -1 O ILE A 227 N LEU A 215 SHEET 1 G 2 THR A 221 TYR A 222 0 SHEET 2 G 2 VAL A 249 ASP A 251 -1 O GLY A 250 N THR A 221 SHEET 1 H 5 LEU B 484 VAL B 487 0 SHEET 2 H 5 GLY B 549 ILE B 558 -1 O LYS B 557 N MET B 485 SHEET 3 H 5 ILE B 457 ASN B 465 -1 N GLY B 460 O ILE B 554 SHEET 4 H 5 SER B 442 PHE B 447 -1 N GLU B 444 O ARG B 463 SHEET 5 H 5 GLU B 595 ILE B 597 1 O ILE B 597 N ILE B 443 SHEET 1 I 4 PRO B 514 ALA B 518 0 SHEET 2 I 4 ILE B 526 TYR B 533 -1 O ALA B 530 N ILE B 517 SHEET 3 I 4 PHE B 470 VAL B 478 -1 N ILE B 477 O LEU B 527 SHEET 4 I 4 LYS B 567 PHE B 568 -1 O LYS B 567 N VAL B 478 SHEET 1 J 5 PRO B 514 ALA B 518 0 SHEET 2 J 5 ILE B 526 TYR B 533 -1 O ALA B 530 N ILE B 517 SHEET 3 J 5 PHE B 470 VAL B 478 -1 N ILE B 477 O LEU B 527 SHEET 4 J 5 THR B 581 ASP B 585 -1 O PHE B 584 N ALA B 471 SHEET 5 J 5 VAL B 590 ILE B 591 -1 O ILE B 591 N LEU B 583 LINK OD1 ASP A 251 CA CA A 702 1555 1555 2.37 LINK O VAL A 253 CA CA A 702 1555 1555 2.28 LINK OD1 ASP A 255 CA CA A 702 1555 1555 2.35 LINK O SER A 257 CA CA A 702 1555 1555 2.17 LINK OD1 ASP A 262 CA CA A 702 1555 1555 2.53 LINK OD2 ASP A 262 CA CA A 702 1555 1555 2.47 LINK OD1 ASP A 284 CA CA A 701 1555 1555 2.38 LINK OD1 ASN A 286 CA CA A 701 1555 1555 2.44 LINK OD1 ASN A 288 CA CA A 701 1555 1555 2.40 LINK O ALA A 290 CA CA A 701 1555 1555 2.30 LINK OD1 ASP A 295 CA CA A 701 1555 1555 2.52 LINK OD2 ASP A 295 CA CA A 701 1555 1555 2.55 LINK O HOH A 345 CA CA A 701 1555 1555 2.43 LINK O HOH A 346 CA CA A 702 1555 1555 2.45 SITE 1 AC1 6 ASP A 284 ASN A 286 ASN A 288 ALA A 290 SITE 2 AC1 6 ASP A 295 HOH A 345 SITE 1 AC2 6 ASP A 251 VAL A 253 ASP A 255 SER A 257 SITE 2 AC2 6 ASP A 262 HOH A 346 SITE 1 AC3 2 ARG A 225 MET A 246 CRYST1 169.977 58.019 56.150 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005883 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017236 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017809 0.00000