HEADER OXIDOREDUCTASE 22-OCT-09 3KCX TITLE FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH CLIOQUINOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 15-349; COMPND 5 SYNONYM: HYPOXIA-INDUCIBLE FACTOR ASPARAGINE HYDROXYLASE, FACTOR COMPND 6 INHIBITING HIF-1, FIH-1; COMPND 7 EC: 1.14.11.16; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS HYPOXIA, HIF-1, FIH-1, INHIBITOR, DIOXYGENASE, IRON, METAL-BINDING, KEYWDS 2 NUCLEUS, OXIDOREDUCTASE, TRANSCRIPTION, TRANSCRIPTION REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR H.MOON,S.HAN,J.CHOE REVDAT 4 20-MAR-24 3KCX 1 REMARK LINK REVDAT 3 01-NOV-17 3KCX 1 REMARK REVDAT 2 26-FEB-14 3KCX 1 JRNL VERSN REVDAT 1 28-APR-10 3KCX 0 JRNL AUTH H.MOON,S.HAN,H.PARK,J.CHOE JRNL TITL CRYSTAL STRUCTURES OF HUMAN FIH-1 IN COMPLEX WITH QUINOL JRNL TITL 2 FAMILY INHIBITORS JRNL REF MOL.CELLS V. 29 471 2010 JRNL REFN ISSN 1016-8478 JRNL PMID 20396966 JRNL DOI 10.1007/S10059-010-0058-3 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 17777 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.246 REMARK 3 R VALUE (WORKING SET) : 0.244 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 910 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1189 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.14 REMARK 3 BIN R VALUE (WORKING SET) : 0.3120 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.4130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2696 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 68 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : 0.03000 REMARK 3 B33 (A**2) : -0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.456 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.316 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.242 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.844 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.925 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2814 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3826 ; 1.485 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 330 ; 6.011 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 148 ;38.715 ;24.662 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 438 ;18.847 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;20.753 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 384 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2226 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1338 ; 0.250 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1867 ; 0.317 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 130 ; 0.171 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 57 ; 0.306 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.296 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1670 ; 0.808 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2677 ; 1.434 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1309 ; 1.789 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1149 ; 2.867 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3KCX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055834. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 6C1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17839 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.80 REMARK 200 R MERGE (I) : 0.12200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.90 REMARK 200 R MERGE FOR SHELL (I) : 0.76000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M AMMONIUM SULFATE, 2% REMARK 280 POLYETHYLENEGLYCOL 400, 0.1M TRIS-HCL, PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.26250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.37300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.37300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.63125 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.37300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.37300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 109.89375 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.37300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.37300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 36.63125 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.37300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.37300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 109.89375 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 73.26250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 -86.74600 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 86.74600 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 304 REMARK 465 ARG A 305 REMARK 465 ILE A 306 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 15 CG CD OE1 OE2 REMARK 470 GLU A 29 CG CD OE1 OE2 REMARK 470 ASN A 87 CG OD1 ND2 REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 ARG A 117 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 133 CG CD OE1 NE2 REMARK 470 GLN A 136 CG CD OE1 NE2 REMARK 470 ARG A 156 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 157 CD CE NZ REMARK 470 LYS A 311 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 30 -5.75 -58.71 REMARK 500 VAL A 62 129.77 -173.55 REMARK 500 ASP A 77 -168.74 -123.99 REMARK 500 THR A 97 167.29 168.33 REMARK 500 ASN A 113 44.17 -70.73 REMARK 500 THR A 149 100.47 -53.16 REMARK 500 LEU A 150 109.44 -57.02 REMARK 500 ASN A 151 -99.39 -100.98 REMARK 500 ASP A 152 -33.68 -137.25 REMARK 500 THR A 153 -7.18 -53.02 REMARK 500 LEU A 182 108.77 -56.13 REMARK 500 ILE A 210 -54.60 -128.49 REMARK 500 TYR A 230 153.11 -37.82 REMARK 500 ASP A 237 126.14 -32.41 REMARK 500 ARG A 238 -5.46 90.61 REMARK 500 ASN A 246 72.57 -150.10 REMARK 500 TYR A 276 -8.23 78.89 REMARK 500 ASN A 286 11.41 54.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A1350 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CQL A 1 OAA REMARK 620 2 CQL A 1 NAH 68.2 REMARK 620 3 HIS A 199 NE2 112.7 117.1 REMARK 620 4 ASP A 201 OD2 105.2 117.4 121.7 REMARK 620 5 HIS A 279 NE2 153.6 85.8 82.6 82.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 1350 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1352 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1353 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 350 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 351 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 352 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CQL A 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KCY RELATED DB: PDB DBREF 3KCX A 15 349 UNP Q9NWT6 HIF1N_HUMAN 15 349 SEQRES 1 A 335 GLU PRO ARG GLU GLU ALA GLY ALA LEU GLY PRO ALA TRP SEQRES 2 A 335 ASP GLU SER GLN LEU ARG SER TYR SER PHE PRO THR ARG SEQRES 3 A 335 PRO ILE PRO ARG LEU SER GLN SER ASP PRO ARG ALA GLU SEQRES 4 A 335 GLU LEU ILE GLU ASN GLU GLU PRO VAL VAL LEU THR ASP SEQRES 5 A 335 THR ASN LEU VAL TYR PRO ALA LEU LYS TRP ASP LEU GLU SEQRES 6 A 335 TYR LEU GLN GLU ASN ILE GLY ASN GLY ASP PHE SER VAL SEQRES 7 A 335 TYR SER ALA SER THR HIS LYS PHE LEU TYR TYR ASP GLU SEQRES 8 A 335 LYS LYS MET ALA ASN PHE GLN ASN PHE LYS PRO ARG SER SEQRES 9 A 335 ASN ARG GLU GLU MET LYS PHE HIS GLU PHE VAL GLU LYS SEQRES 10 A 335 LEU GLN ASP ILE GLN GLN ARG GLY GLY GLU GLU ARG LEU SEQRES 11 A 335 TYR LEU GLN GLN THR LEU ASN ASP THR VAL GLY ARG LYS SEQRES 12 A 335 ILE VAL MET ASP PHE LEU GLY PHE ASN TRP ASN TRP ILE SEQRES 13 A 335 ASN LYS GLN GLN GLY LYS ARG GLY TRP GLY GLN LEU THR SEQRES 14 A 335 SER ASN LEU LEU LEU ILE GLY MET GLU GLY ASN VAL THR SEQRES 15 A 335 PRO ALA HIS TYR ASP GLU GLN GLN ASN PHE PHE ALA GLN SEQRES 16 A 335 ILE LYS GLY TYR LYS ARG CYS ILE LEU PHE PRO PRO ASP SEQRES 17 A 335 GLN PHE GLU CYS LEU TYR PRO TYR PRO VAL HIS HIS PRO SEQRES 18 A 335 CYS ASP ARG GLN SER GLN VAL ASP PHE ASP ASN PRO ASP SEQRES 19 A 335 TYR GLU ARG PHE PRO ASN PHE GLN ASN VAL VAL GLY TYR SEQRES 20 A 335 GLU THR VAL VAL GLY PRO GLY ASP VAL LEU TYR ILE PRO SEQRES 21 A 335 MET TYR TRP TRP HIS HIS ILE GLU SER LEU LEU ASN GLY SEQRES 22 A 335 GLY ILE THR ILE THR VAL ASN PHE TRP TYR LYS GLY ALA SEQRES 23 A 335 PRO THR PRO LYS ARG ILE GLU TYR PRO LEU LYS ALA HIS SEQRES 24 A 335 GLN LYS VAL ALA ILE MET ARG ASN ILE GLU LYS MET LEU SEQRES 25 A 335 GLY GLU ALA LEU GLY ASN PRO GLN GLU VAL GLY PRO LEU SEQRES 26 A 335 LEU ASN THR MET ILE LYS GLY ARG TYR ASN HET FE2 A1350 1 HET SO4 A1352 5 HET SO4 A1353 5 HET GOL A 350 6 HET GOL A 351 6 HET GOL A 352 6 HET CQL A 1 13 HETNAM FE2 FE (II) ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM CQL 5-CHLORO-7-IODOQUINOLIN-8-OL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN CQL CLIOQUINOL FORMUL 2 FE2 FE 2+ FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 GOL 3(C3 H8 O3) FORMUL 8 CQL C9 H5 CL I N O FORMUL 9 HOH *68(H2 O) HELIX 1 1 GLU A 19 LEU A 23 5 5 HELIX 2 2 ASP A 28 LEU A 32 5 5 HELIX 3 3 ASP A 49 ASN A 58 1 10 HELIX 4 4 VAL A 70 TRP A 76 5 7 HELIX 5 5 ASP A 77 ILE A 85 1 9 HELIX 6 6 GLU A 105 PHE A 111 5 7 HELIX 7 7 LYS A 124 ARG A 138 1 15 HELIX 8 8 GLY A 155 GLY A 164 1 10 HELIX 9 9 ASN A 166 ARG A 177 1 12 HELIX 10 10 PRO A 220 ASP A 222 5 3 HELIX 11 11 GLN A 223 TYR A 228 1 6 HELIX 12 12 PHE A 252 VAL A 258 5 7 HELIX 13 13 LYS A 311 LEU A 330 1 20 HELIX 14 14 ASN A 332 GLN A 334 5 3 HELIX 15 15 GLU A 335 LYS A 345 1 11 SHEET 1 A 5 THR A 39 PRO A 41 0 SHEET 2 A 5 GLY A 260 VAL A 265 1 O GLU A 262 N ARG A 40 SHEET 3 A 5 LYS A 214 PHE A 219 -1 N LEU A 218 O TYR A 261 SHEET 4 A 5 TRP A 278 SER A 283 -1 O HIS A 280 N ILE A 217 SHEET 5 A 5 VAL A 195 TYR A 200 -1 N THR A 196 O ILE A 281 SHEET 1 B 9 ARG A 44 LEU A 45 0 SHEET 2 B 9 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45 SHEET 3 B 9 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64 SHEET 4 B 9 GLN A 204 LYS A 211 -1 N PHE A 207 O LEU A 271 SHEET 5 B 9 THR A 290 TYR A 297 -1 O ILE A 291 N LYS A 211 SHEET 6 B 9 LEU A 182 GLY A 190 -1 N LEU A 188 O THR A 292 SHEET 7 B 9 ARG A 143 GLN A 147 -1 N LEU A 146 O ILE A 189 SHEET 8 B 9 PHE A 90 ALA A 95 -1 N TYR A 93 O TYR A 145 SHEET 9 B 9 SER A 118 MET A 123 -1 O MET A 123 N PHE A 90 LINK OAA CQL A 1 FE FE2 A1350 1555 1555 2.50 LINK NAH CQL A 1 FE FE2 A1350 1555 1555 2.21 LINK NE2 HIS A 199 FE FE2 A1350 1555 1555 2.07 LINK OD2 ASP A 201 FE FE2 A1350 1555 1555 2.17 LINK NE2 HIS A 279 FE FE2 A1350 1555 1555 2.26 CISPEP 1 TYR A 308 PRO A 309 0 11.46 SITE 1 AC1 4 CQL A 1 HIS A 199 ASP A 201 HIS A 279 SITE 1 AC2 4 ARG A 138 GLY A 140 GLU A 141 GLU A 142 SITE 1 AC3 5 LYS A 107 ASP A 237 ARG A 320 LYS A 324 SITE 2 AC3 5 HOH A 384 SITE 1 AC4 8 LYS A 99 PRO A 197 ALA A 198 VAL A 242 SITE 2 AC4 8 ASP A 243 PHE A 244 HIS A 280 GOL A 352 SITE 1 AC5 5 ASP A 222 GLN A 223 PHE A 224 GLU A 225 SITE 2 AC5 5 LYS A 315 SITE 1 AC6 8 LYS A 99 LEU A 101 TYR A 230 SER A 240 SITE 2 AC6 8 GLN A 241 VAL A 242 ASP A 243 GOL A 350 SITE 1 AC7 11 TYR A 145 LEU A 188 THR A 196 HIS A 199 SITE 2 AC7 11 PHE A 207 LYS A 214 ILE A 273 HIS A 279 SITE 3 AC7 11 ILE A 281 TRP A 296 FE2 A1350 CRYST1 86.746 86.746 146.525 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011528 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011528 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006825 0.00000