data_3KDW # _entry.id 3KDW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3KDW pdb_00003kdw 10.2210/pdb3kdw/pdb RCSB RCSB055869 ? ? WWPDB D_1000055869 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 393277 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3KDW _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-10-23 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of Putative sugar binding protein (YP_001300177.1) from Bacteroides vulgatus ATCC 8482 at 1.70 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3KDW _cell.length_a 75.303 _cell.length_b 75.303 _cell.length_c 87.128 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KDW _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative sugar binding protein' 25585.248 1 ? ? ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 3 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 2 ? ? ? ? 4 non-polymer syn '(4R)-2-METHYLPENTANE-2,4-DIOL' 118.174 1 ? ? ? ? 5 non-polymer syn 'PHOSPHATE ION' 94.971 7 ? ? ? ? 6 water nat water 18.015 253 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GSDKIHHHHHHENLYFQGAVDLDREGRDPAYVESIVKRSQKIVDKLELTDTVAAREVTTIIANRYFKLNDIYETR DAKVKLAKETLTGDAKQEAVKAAEAEKDAALYRTHFAFPADLSLYLDAKQIDAVKDG(MSE)TYGVV(MSE)VTYKATVD (MSE)IPTLKEEEKAQI(MSE)AWLVEAREFA(MSE)DAENSNKKHAAFGKYKGRINNYLSKRGYDLVKERKAWYERIKA RGGKI ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSDKIHHHHHHENLYFQGAVDLDREGRDPAYVESIVKRSQKIVDKLELTDTVAAREVTTIIANRYFKLNDIYETRDAKV KLAKETLTGDAKQEAVKAAEAEKDAALYRTHFAFPADLSLYLDAKQIDAVKDGMTYGVVMVTYKATVDMIPTLKEEEKAQ IMAWLVEAREFAMDAENSNKKHAAFGKYKGRINNYLSKRGYDLVKERKAWYERIKARGGKI ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 393277 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 SER n 1 4 ASP n 1 5 LYS n 1 6 ILE n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 HIS n 1 12 HIS n 1 13 GLU n 1 14 ASN n 1 15 LEU n 1 16 TYR n 1 17 PHE n 1 18 GLN n 1 19 GLY n 1 20 ALA n 1 21 VAL n 1 22 ASP n 1 23 LEU n 1 24 ASP n 1 25 ARG n 1 26 GLU n 1 27 GLY n 1 28 ARG n 1 29 ASP n 1 30 PRO n 1 31 ALA n 1 32 TYR n 1 33 VAL n 1 34 GLU n 1 35 SER n 1 36 ILE n 1 37 VAL n 1 38 LYS n 1 39 ARG n 1 40 SER n 1 41 GLN n 1 42 LYS n 1 43 ILE n 1 44 VAL n 1 45 ASP n 1 46 LYS n 1 47 LEU n 1 48 GLU n 1 49 LEU n 1 50 THR n 1 51 ASP n 1 52 THR n 1 53 VAL n 1 54 ALA n 1 55 ALA n 1 56 ARG n 1 57 GLU n 1 58 VAL n 1 59 THR n 1 60 THR n 1 61 ILE n 1 62 ILE n 1 63 ALA n 1 64 ASN n 1 65 ARG n 1 66 TYR n 1 67 PHE n 1 68 LYS n 1 69 LEU n 1 70 ASN n 1 71 ASP n 1 72 ILE n 1 73 TYR n 1 74 GLU n 1 75 THR n 1 76 ARG n 1 77 ASP n 1 78 ALA n 1 79 LYS n 1 80 VAL n 1 81 LYS n 1 82 LEU n 1 83 ALA n 1 84 LYS n 1 85 GLU n 1 86 THR n 1 87 LEU n 1 88 THR n 1 89 GLY n 1 90 ASP n 1 91 ALA n 1 92 LYS n 1 93 GLN n 1 94 GLU n 1 95 ALA n 1 96 VAL n 1 97 LYS n 1 98 ALA n 1 99 ALA n 1 100 GLU n 1 101 ALA n 1 102 GLU n 1 103 LYS n 1 104 ASP n 1 105 ALA n 1 106 ALA n 1 107 LEU n 1 108 TYR n 1 109 ARG n 1 110 THR n 1 111 HIS n 1 112 PHE n 1 113 ALA n 1 114 PHE n 1 115 PRO n 1 116 ALA n 1 117 ASP n 1 118 LEU n 1 119 SER n 1 120 LEU n 1 121 TYR n 1 122 LEU n 1 123 ASP n 1 124 ALA n 1 125 LYS n 1 126 GLN n 1 127 ILE n 1 128 ASP n 1 129 ALA n 1 130 VAL n 1 131 LYS n 1 132 ASP n 1 133 GLY n 1 134 MSE n 1 135 THR n 1 136 TYR n 1 137 GLY n 1 138 VAL n 1 139 VAL n 1 140 MSE n 1 141 VAL n 1 142 THR n 1 143 TYR n 1 144 LYS n 1 145 ALA n 1 146 THR n 1 147 VAL n 1 148 ASP n 1 149 MSE n 1 150 ILE n 1 151 PRO n 1 152 THR n 1 153 LEU n 1 154 LYS n 1 155 GLU n 1 156 GLU n 1 157 GLU n 1 158 LYS n 1 159 ALA n 1 160 GLN n 1 161 ILE n 1 162 MSE n 1 163 ALA n 1 164 TRP n 1 165 LEU n 1 166 VAL n 1 167 GLU n 1 168 ALA n 1 169 ARG n 1 170 GLU n 1 171 PHE n 1 172 ALA n 1 173 MSE n 1 174 ASP n 1 175 ALA n 1 176 GLU n 1 177 ASN n 1 178 SER n 1 179 ASN n 1 180 LYS n 1 181 LYS n 1 182 HIS n 1 183 ALA n 1 184 ALA n 1 185 PHE n 1 186 GLY n 1 187 LYS n 1 188 TYR n 1 189 LYS n 1 190 GLY n 1 191 ARG n 1 192 ILE n 1 193 ASN n 1 194 ASN n 1 195 TYR n 1 196 LEU n 1 197 SER n 1 198 LYS n 1 199 ARG n 1 200 GLY n 1 201 TYR n 1 202 ASP n 1 203 LEU n 1 204 VAL n 1 205 LYS n 1 206 GLU n 1 207 ARG n 1 208 LYS n 1 209 ALA n 1 210 TRP n 1 211 TYR n 1 212 GLU n 1 213 ARG n 1 214 ILE n 1 215 LYS n 1 216 ALA n 1 217 ARG n 1 218 GLY n 1 219 GLY n 1 220 LYS n 1 221 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene BVU_2916 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 8482 / DSM 1447 / NCTC 11154' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacteroides vulgatus ATCC 8482' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 435590 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A6L4E1_BACV8 _struct_ref.pdbx_db_accession A6L4E1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;AVDLDREGRDPAYVESIVKRSQKIVDKLELTDTVAAREVTTIIANRYFKLNDIYETRDAKVKLAKETLTGDAKQEAVKAA EAEKDAALYRTHFAFPADLSLYLDAKQIDAVKDGMTYGVVMVTYKATVDMIPTLKEEEKAQIMAWLVEAREFAMDAENSN KKHAAFGKYKGRINNYLSKRGYDLVKERKAWYERIKARGGKI ; _struct_ref.pdbx_align_begin 21 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3KDW _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 20 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 221 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A6L4E1 _struct_ref_seq.db_align_beg 21 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 222 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 21 _struct_ref_seq.pdbx_auth_seq_align_end 222 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3KDW MSE A 1 ? UNP A6L4E1 ? ? 'expression tag' -18 1 1 3KDW GLY A 2 ? UNP A6L4E1 ? ? 'expression tag' -17 2 1 3KDW SER A 3 ? UNP A6L4E1 ? ? 'expression tag' -16 3 1 3KDW ASP A 4 ? UNP A6L4E1 ? ? 'expression tag' -15 4 1 3KDW LYS A 5 ? UNP A6L4E1 ? ? 'expression tag' -14 5 1 3KDW ILE A 6 ? UNP A6L4E1 ? ? 'expression tag' -13 6 1 3KDW HIS A 7 ? UNP A6L4E1 ? ? 'expression tag' -12 7 1 3KDW HIS A 8 ? UNP A6L4E1 ? ? 'expression tag' -11 8 1 3KDW HIS A 9 ? UNP A6L4E1 ? ? 'expression tag' -10 9 1 3KDW HIS A 10 ? UNP A6L4E1 ? ? 'expression tag' -9 10 1 3KDW HIS A 11 ? UNP A6L4E1 ? ? 'expression tag' -8 11 1 3KDW HIS A 12 ? UNP A6L4E1 ? ? 'expression tag' -7 12 1 3KDW GLU A 13 ? UNP A6L4E1 ? ? 'expression tag' -6 13 1 3KDW ASN A 14 ? UNP A6L4E1 ? ? 'expression tag' -5 14 1 3KDW LEU A 15 ? UNP A6L4E1 ? ? 'expression tag' -4 15 1 3KDW TYR A 16 ? UNP A6L4E1 ? ? 'expression tag' -3 16 1 3KDW PHE A 17 ? UNP A6L4E1 ? ? 'expression tag' -2 17 1 3KDW GLN A 18 ? UNP A6L4E1 ? ? 'expression tag' -1 18 1 3KDW GLY A 19 ? UNP A6L4E1 ? ? 'expression tag' 0 19 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 MRD non-polymer . '(4R)-2-METHYLPENTANE-2,4-DIOL' ? 'C6 H14 O2' 118.174 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3KDW # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.79 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 55.87 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '0.2000M (NH4)2HPO4, 50.0000% MPD, 0.1M TRIS pH 8.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat mirror (vertical focusing)' _diffrn_detector.pdbx_collection_date 2009-07-08 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Single crystal Si(111) bent monochromator (horizontal focusing)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91837 1.0 2 0.97929 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength_list 0.91837,0.97929 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3KDW _reflns.d_resolution_high 1.70 _reflns.d_resolution_low 28.490 _reflns.number_obs 31900 _reflns.pdbx_Rmerge_I_obs 0.040 _reflns.pdbx_netI_over_sigmaI 16.690 _reflns.percent_possible_obs 99.500 _reflns.B_iso_Wilson_estimate 24.086 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.70 1.76 16659 ? 5898 0.550 2.0 ? ? ? ? ? 98.00 1 1 1.76 1.83 17291 ? 6063 0.410 2.7 ? ? ? ? ? 99.70 2 1 1.83 1.91 16655 ? 5827 0.298 3.6 ? ? ? ? ? 99.70 3 1 1.91 2.02 18986 ? 6622 0.183 6.0 ? ? ? ? ? 99.60 4 1 2.02 2.14 16420 ? 5720 0.112 9.3 ? ? ? ? ? 99.60 5 1 2.14 2.31 17966 ? 6237 0.075 13.5 ? ? ? ? ? 99.70 6 1 2.31 2.54 17246 ? 5967 0.053 18.3 ? ? ? ? ? 99.60 7 1 2.54 2.90 17460 ? 6020 0.036 25.4 ? ? ? ? ? 99.70 8 1 2.90 3.66 17768 ? 6115 0.024 37.2 ? ? ? ? ? 99.70 9 1 3.66 28.490 17679 ? 6080 0.019 48.6 ? ? ? ? ? 99.40 10 1 # _refine.entry_id 3KDW _refine.ls_d_res_high 1.700 _refine.ls_d_res_low 28.490 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.790 _refine.ls_number_reflns_obs 31866 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. CHLORIDE (CL), (4S)-2-METHYL-2,4-PENTANEDIOL (MPD) (4R)-2-METHYL-2,4-PENTANEDIOL (MRD), AND PHOSPHATE (PO4) FROM THE PROTEIN/CRYSTALLIZATION SOLUTION HAVE BEEN MODELED INTO THE SOLVENT STRUCTURE. 5. TLS GROUPS WERE ASSIGNED WITH THE AID OF THE TLSMD SERVER. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.154 _refine.ls_R_factor_R_work 0.152 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.191 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 1609 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 14.705 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.190 _refine.aniso_B[2][2] -0.190 _refine.aniso_B[3][3] 0.280 _refine.aniso_B[1][2] -0.090 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.970 _refine.correlation_coeff_Fo_to_Fc_free 0.948 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.080 _refine.pdbx_overall_ESU_R_Free 0.086 _refine.overall_SU_ML 0.047 _refine.overall_SU_B 3.124 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 88.56 _refine.B_iso_min 4.35 _refine.occupancy_max 1.00 _refine.occupancy_min 0.30 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1626 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 60 _refine_hist.number_atoms_solvent 253 _refine_hist.number_atoms_total 1939 _refine_hist.d_res_high 1.700 _refine_hist.d_res_low 28.490 # loop_ _refine_ls_restr.type _refine_ls_restr.pdbx_refine_id _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 'X-RAY DIFFRACTION' 1831 0.018 0.022 ? ? r_bond_other_d 'X-RAY DIFFRACTION' 1246 0.001 0.020 ? ? r_angle_refined_deg 'X-RAY DIFFRACTION' 2508 1.518 1.988 ? ? r_angle_other_deg 'X-RAY DIFFRACTION' 3043 1.041 3.000 ? ? r_dihedral_angle_1_deg 'X-RAY DIFFRACTION' 244 4.456 5.000 ? ? r_dihedral_angle_2_deg 'X-RAY DIFFRACTION' 90 35.239 24.111 ? ? r_dihedral_angle_3_deg 'X-RAY DIFFRACTION' 333 13.217 15.000 ? ? r_dihedral_angle_4_deg 'X-RAY DIFFRACTION' 15 13.321 15.000 ? ? r_chiral_restr 'X-RAY DIFFRACTION' 274 0.097 0.200 ? ? r_gen_planes_refined 'X-RAY DIFFRACTION' 2044 0.008 0.020 ? ? r_gen_planes_other 'X-RAY DIFFRACTION' 377 0.001 0.020 ? ? r_mcbond_it 'X-RAY DIFFRACTION' 1085 0.827 1.500 ? ? r_mcbond_other 'X-RAY DIFFRACTION' 439 0.284 1.500 ? ? r_mcangle_it 'X-RAY DIFFRACTION' 1759 1.504 2.000 ? ? r_scbond_it 'X-RAY DIFFRACTION' 746 2.528 3.000 ? ? r_scangle_it 'X-RAY DIFFRACTION' 728 3.986 4.500 ? ? # _refine_ls_shell.d_res_high 1.700 _refine_ls_shell.d_res_low 1.744 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 97.860 _refine_ls_shell.number_reflns_R_work 2172 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.264 _refine_ls_shell.R_factor_R_free 0.302 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 114 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2286 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3KDW _struct.title 'Crystal structure of Putative sugar binding protein (YP_001300177.1) from Bacteroides vulgatus ATCC 8482 at 1.70 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;Putative sugar binding protein, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, SUGAR BINDING PROTEIN ; _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' _struct_keywords.entry_id 3KDW # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 3 ? F N N 5 ? G N N 5 ? H N N 5 ? I N N 5 ? J N N 5 ? K N N 5 ? L N N 5 ? M N N 6 ? # _struct_biol.id 1 _struct_biol.details ;CRYSTAL PACKING ANALYSIS AND ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY COUPLED WITH STATIC LIGHT SCATTERING SUPPORT THE ASSIGNMENT OF A DIMER AS A SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 29 ? GLU A 48 ? ASP A 30 GLU A 49 1 ? 20 HELX_P HELX_P2 2 ASP A 51 ? LEU A 87 ? ASP A 52 LEU A 88 1 ? 37 HELX_P HELX_P3 3 THR A 88 ? PHE A 112 ? THR A 89 PHE A 113 1 ? 25 HELX_P HELX_P4 4 PHE A 112 ? SER A 119 ? PHE A 113 SER A 120 1 ? 8 HELX_P HELX_P5 5 ASP A 123 ? MSE A 134 ? ASP A 124 MSE A 135 1 ? 12 HELX_P HELX_P6 6 GLY A 137 ? ILE A 150 ? GLY A 138 ILE A 151 1 ? 14 HELX_P HELX_P7 7 LYS A 154 ? MSE A 173 ? LYS A 155 MSE A 174 1 ? 20 HELX_P HELX_P8 8 ASN A 177 ? ARG A 199 ? ASN A 178 ARG A 200 1 ? 23 HELX_P HELX_P9 9 ASP A 202 ? ARG A 217 ? ASP A 203 ARG A 218 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 133 C ? ? ? 1_555 A MSE 134 N ? ? A GLY 134 A MSE 135 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale2 covale both ? A MSE 134 C ? ? ? 1_555 A THR 135 N ? ? A MSE 135 A THR 136 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale3 covale both ? A VAL 139 C ? ? ? 1_555 A MSE 140 N ? ? A VAL 140 A MSE 141 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale4 covale both ? A MSE 140 C ? ? ? 1_555 A VAL 141 N ? ? A MSE 141 A VAL 142 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale5 covale both ? A ASP 148 C ? ? ? 1_555 A MSE 149 N ? ? A ASP 149 A MSE 150 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale6 covale both ? A MSE 149 C ? ? ? 1_555 A ILE 150 N ? ? A MSE 150 A ILE 151 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale7 covale both ? A ILE 161 C ? ? ? 1_555 A MSE 162 N ? ? A ILE 162 A MSE 163 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale8 covale both ? A MSE 162 C ? ? ? 1_555 A ALA 163 N ? ? A MSE 163 A ALA 164 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale9 covale both ? A ALA 172 C ? ? ? 1_555 A MSE 173 N ? ? A ALA 173 A MSE 174 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale10 covale both ? A MSE 173 C ? ? ? 1_555 A ASP 174 N ? ? A MSE 174 A ASP 175 1_555 ? ? ? ? ? ? ? 1.336 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CL 300 ? 3 'BINDING SITE FOR RESIDUE CL A 300' AC2 Software A MPD 301 ? 4 'BINDING SITE FOR RESIDUE MPD A 301' AC3 Software A MRD 302 ? 7 'BINDING SITE FOR RESIDUE MRD A 302' AC4 Software A MPD 303 ? 3 'BINDING SITE FOR RESIDUE MPD A 303' AC5 Software A PO4 304 ? 3 'BINDING SITE FOR RESIDUE PO4 A 304' AC6 Software A PO4 305 ? 4 'BINDING SITE FOR RESIDUE PO4 A 305' AC7 Software A PO4 306 ? 8 'BINDING SITE FOR RESIDUE PO4 A 306' AC8 Software A PO4 307 ? 6 'BINDING SITE FOR RESIDUE PO4 A 307' AC9 Software A PO4 308 ? 7 'BINDING SITE FOR RESIDUE PO4 A 308' BC1 Software A PO4 309 ? 3 'BINDING SITE FOR RESIDUE PO4 A 309' BC2 Software A PO4 310 ? 3 'BINDING SITE FOR RESIDUE PO4 A 310' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 GLN A 18 ? GLN A -1 . ? 1_555 ? 2 AC1 3 ARG A 25 ? ARG A 26 . ? 1_555 ? 3 AC1 3 HOH M . ? HOH A 433 . ? 5_665 ? 4 AC2 4 HOH M . ? HOH A 411 . ? 5_565 ? 5 AC2 4 HOH M . ? HOH A 422 . ? 1_555 ? 6 AC2 4 HOH M . ? HOH A 594 . ? 1_555 ? 7 AC2 4 HOH M . ? HOH A 611 . ? 1_555 ? 8 AC3 7 LYS A 103 ? LYS A 104 . ? 1_555 ? 9 AC3 7 ARG A 109 ? ARG A 110 . ? 4_556 ? 10 AC3 7 PHE A 171 ? PHE A 172 . ? 1_555 ? 11 AC3 7 HOH M . ? HOH A 411 . ? 5_565 ? 12 AC3 7 HOH M . ? HOH A 422 . ? 1_555 ? 13 AC3 7 HOH M . ? HOH A 594 . ? 1_555 ? 14 AC3 7 HOH M . ? HOH A 611 . ? 1_555 ? 15 AC4 3 THR A 146 ? THR A 147 . ? 1_555 ? 16 AC4 3 ASN A 193 ? ASN A 194 . ? 1_555 ? 17 AC4 3 ARG A 207 ? ARG A 208 . ? 1_555 ? 18 AC5 3 LEU A 23 ? LEU A 24 . ? 1_555 ? 19 AC5 3 ASN A 194 ? ASN A 195 . ? 5_665 ? 20 AC5 3 HOH M . ? HOH A 523 . ? 1_555 ? 21 AC6 4 ARG A 39 ? ARG A 40 . ? 1_555 ? 22 AC6 4 HOH M . ? HOH A 438 . ? 1_555 ? 23 AC6 4 HOH M . ? HOH A 478 . ? 1_555 ? 24 AC6 4 HOH M . ? HOH A 531 . ? 1_555 ? 25 AC7 8 LEU A 49 ? LEU A 50 . ? 1_555 ? 26 AC7 8 THR A 50 ? THR A 51 . ? 1_555 ? 27 AC7 8 ASP A 51 ? ASP A 52 . ? 1_555 ? 28 AC7 8 LYS A 84 ? LYS A 85 . ? 5_665 ? 29 AC7 8 GLN A 126 ? GLN A 127 . ? 1_555 ? 30 AC7 8 HOH M . ? HOH A 482 . ? 1_555 ? 31 AC7 8 HOH M . ? HOH A 524 . ? 1_555 ? 32 AC7 8 HOH M . ? HOH A 550 . ? 1_555 ? 33 AC8 6 ASP A 128 ? ASP A 129 . ? 1_555 ? 34 AC8 6 ASP A 132 ? ASP A 133 . ? 1_555 ? 35 AC8 6 MSE A 140 ? MSE A 141 . ? 1_555 ? 36 AC8 6 ARG A 169 ? ARG A 170 . ? 1_555 ? 37 AC8 6 HOH M . ? HOH A 399 . ? 1_555 ? 38 AC8 6 HOH M . ? HOH A 400 . ? 1_555 ? 39 AC9 7 LYS A 154 ? LYS A 155 . ? 3_564 ? 40 AC9 7 GLU A 156 ? GLU A 157 . ? 3_564 ? 41 AC9 7 ASN A 177 ? ASN A 178 . ? 1_555 ? 42 AC9 7 SER A 178 ? SER A 179 . ? 1_555 ? 43 AC9 7 HOH M . ? HOH A 389 . ? 1_555 ? 44 AC9 7 HOH M . ? HOH A 398 . ? 1_555 ? 45 AC9 7 HOH M . ? HOH A 579 . ? 1_555 ? 46 BC1 3 TYR A 143 ? TYR A 144 . ? 1_555 ? 47 BC1 3 GLU A 155 ? GLU A 156 . ? 1_555 ? 48 BC1 3 HOH M . ? HOH A 401 . ? 1_555 ? 49 BC2 3 SER A 119 ? SER A 120 . ? 1_555 ? 50 BC2 3 TYR A 121 ? TYR A 122 . ? 1_555 ? 51 BC2 3 LEU A 122 ? LEU A 123 . ? 1_555 ? # _atom_sites.entry_id 3KDW _atom_sites.fract_transf_matrix[1][1] 0.013280 _atom_sites.fract_transf_matrix[1][2] 0.007667 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015334 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011477 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O P SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -18 ? ? ? A . n A 1 2 GLY 2 -17 ? ? ? A . n A 1 3 SER 3 -16 ? ? ? A . n A 1 4 ASP 4 -15 ? ? ? A . n A 1 5 LYS 5 -14 ? ? ? A . n A 1 6 ILE 6 -13 ? ? ? A . n A 1 7 HIS 7 -12 ? ? ? A . n A 1 8 HIS 8 -11 ? ? ? A . n A 1 9 HIS 9 -10 ? ? ? A . n A 1 10 HIS 10 -9 ? ? ? A . n A 1 11 HIS 11 -8 ? ? ? A . n A 1 12 HIS 12 -7 ? ? ? A . n A 1 13 GLU 13 -6 ? ? ? A . n A 1 14 ASN 14 -5 -5 ASN ASN A . n A 1 15 LEU 15 -4 -4 LEU LEU A . n A 1 16 TYR 16 -3 -3 TYR TYR A . n A 1 17 PHE 17 -2 -2 PHE PHE A . n A 1 18 GLN 18 -1 -1 GLN GLN A . n A 1 19 GLY 19 0 0 GLY GLY A . n A 1 20 ALA 20 21 21 ALA ALA A . n A 1 21 VAL 21 22 22 VAL VAL A . n A 1 22 ASP 22 23 23 ASP ASP A . n A 1 23 LEU 23 24 24 LEU LEU A . n A 1 24 ASP 24 25 25 ASP ASP A . n A 1 25 ARG 25 26 26 ARG ARG A . n A 1 26 GLU 26 27 27 GLU GLU A . n A 1 27 GLY 27 28 28 GLY GLY A . n A 1 28 ARG 28 29 29 ARG ARG A . n A 1 29 ASP 29 30 30 ASP ASP A . n A 1 30 PRO 30 31 31 PRO PRO A . n A 1 31 ALA 31 32 32 ALA ALA A . n A 1 32 TYR 32 33 33 TYR TYR A . n A 1 33 VAL 33 34 34 VAL VAL A . n A 1 34 GLU 34 35 35 GLU GLU A . n A 1 35 SER 35 36 36 SER SER A . n A 1 36 ILE 36 37 37 ILE ILE A . n A 1 37 VAL 37 38 38 VAL VAL A . n A 1 38 LYS 38 39 39 LYS LYS A . n A 1 39 ARG 39 40 40 ARG ARG A . n A 1 40 SER 40 41 41 SER SER A . n A 1 41 GLN 41 42 42 GLN GLN A . n A 1 42 LYS 42 43 43 LYS LYS A . n A 1 43 ILE 43 44 44 ILE ILE A . n A 1 44 VAL 44 45 45 VAL VAL A . n A 1 45 ASP 45 46 46 ASP ASP A . n A 1 46 LYS 46 47 47 LYS LYS A . n A 1 47 LEU 47 48 48 LEU LEU A . n A 1 48 GLU 48 49 49 GLU GLU A . n A 1 49 LEU 49 50 50 LEU LEU A . n A 1 50 THR 50 51 51 THR THR A . n A 1 51 ASP 51 52 52 ASP ASP A . n A 1 52 THR 52 53 53 THR THR A . n A 1 53 VAL 53 54 54 VAL VAL A . n A 1 54 ALA 54 55 55 ALA ALA A . n A 1 55 ALA 55 56 56 ALA ALA A . n A 1 56 ARG 56 57 57 ARG ARG A . n A 1 57 GLU 57 58 58 GLU GLU A . n A 1 58 VAL 58 59 59 VAL VAL A . n A 1 59 THR 59 60 60 THR THR A . n A 1 60 THR 60 61 61 THR THR A . n A 1 61 ILE 61 62 62 ILE ILE A . n A 1 62 ILE 62 63 63 ILE ILE A . n A 1 63 ALA 63 64 64 ALA ALA A . n A 1 64 ASN 64 65 65 ASN ASN A . n A 1 65 ARG 65 66 66 ARG ARG A . n A 1 66 TYR 66 67 67 TYR TYR A . n A 1 67 PHE 67 68 68 PHE PHE A . n A 1 68 LYS 68 69 69 LYS LYS A . n A 1 69 LEU 69 70 70 LEU LEU A . n A 1 70 ASN 70 71 71 ASN ASN A . n A 1 71 ASP 71 72 72 ASP ASP A . n A 1 72 ILE 72 73 73 ILE ILE A . n A 1 73 TYR 73 74 74 TYR TYR A . n A 1 74 GLU 74 75 75 GLU GLU A . n A 1 75 THR 75 76 76 THR THR A . n A 1 76 ARG 76 77 77 ARG ARG A . n A 1 77 ASP 77 78 78 ASP ASP A . n A 1 78 ALA 78 79 79 ALA ALA A . n A 1 79 LYS 79 80 80 LYS LYS A . n A 1 80 VAL 80 81 81 VAL VAL A . n A 1 81 LYS 81 82 82 LYS LYS A . n A 1 82 LEU 82 83 83 LEU LEU A . n A 1 83 ALA 83 84 84 ALA ALA A . n A 1 84 LYS 84 85 85 LYS LYS A . n A 1 85 GLU 85 86 86 GLU GLU A . n A 1 86 THR 86 87 87 THR THR A . n A 1 87 LEU 87 88 88 LEU LEU A . n A 1 88 THR 88 89 89 THR THR A . n A 1 89 GLY 89 90 90 GLY GLY A . n A 1 90 ASP 90 91 91 ASP ASP A . n A 1 91 ALA 91 92 92 ALA ALA A . n A 1 92 LYS 92 93 93 LYS LYS A . n A 1 93 GLN 93 94 94 GLN GLN A . n A 1 94 GLU 94 95 95 GLU GLU A . n A 1 95 ALA 95 96 96 ALA ALA A . n A 1 96 VAL 96 97 97 VAL VAL A . n A 1 97 LYS 97 98 98 LYS LYS A . n A 1 98 ALA 98 99 99 ALA ALA A . n A 1 99 ALA 99 100 100 ALA ALA A . n A 1 100 GLU 100 101 101 GLU GLU A . n A 1 101 ALA 101 102 102 ALA ALA A . n A 1 102 GLU 102 103 103 GLU GLU A . n A 1 103 LYS 103 104 104 LYS LYS A . n A 1 104 ASP 104 105 105 ASP ASP A . n A 1 105 ALA 105 106 106 ALA ALA A . n A 1 106 ALA 106 107 107 ALA ALA A . n A 1 107 LEU 107 108 108 LEU LEU A . n A 1 108 TYR 108 109 109 TYR TYR A . n A 1 109 ARG 109 110 110 ARG ARG A . n A 1 110 THR 110 111 111 THR THR A . n A 1 111 HIS 111 112 112 HIS HIS A . n A 1 112 PHE 112 113 113 PHE PHE A . n A 1 113 ALA 113 114 114 ALA ALA A . n A 1 114 PHE 114 115 115 PHE PHE A . n A 1 115 PRO 115 116 116 PRO PRO A . n A 1 116 ALA 116 117 117 ALA ALA A . n A 1 117 ASP 117 118 118 ASP ASP A . n A 1 118 LEU 118 119 119 LEU LEU A . n A 1 119 SER 119 120 120 SER SER A . n A 1 120 LEU 120 121 121 LEU LEU A . n A 1 121 TYR 121 122 122 TYR TYR A . n A 1 122 LEU 122 123 123 LEU LEU A . n A 1 123 ASP 123 124 124 ASP ASP A . n A 1 124 ALA 124 125 125 ALA ALA A . n A 1 125 LYS 125 126 126 LYS LYS A . n A 1 126 GLN 126 127 127 GLN GLN A . n A 1 127 ILE 127 128 128 ILE ILE A . n A 1 128 ASP 128 129 129 ASP ASP A . n A 1 129 ALA 129 130 130 ALA ALA A . n A 1 130 VAL 130 131 131 VAL VAL A . n A 1 131 LYS 131 132 132 LYS LYS A . n A 1 132 ASP 132 133 133 ASP ASP A . n A 1 133 GLY 133 134 134 GLY GLY A . n A 1 134 MSE 134 135 135 MSE MSE A . n A 1 135 THR 135 136 136 THR THR A . n A 1 136 TYR 136 137 137 TYR TYR A . n A 1 137 GLY 137 138 138 GLY GLY A . n A 1 138 VAL 138 139 139 VAL VAL A . n A 1 139 VAL 139 140 140 VAL VAL A . n A 1 140 MSE 140 141 141 MSE MSE A . n A 1 141 VAL 141 142 142 VAL VAL A . n A 1 142 THR 142 143 143 THR THR A . n A 1 143 TYR 143 144 144 TYR TYR A . n A 1 144 LYS 144 145 145 LYS LYS A . n A 1 145 ALA 145 146 146 ALA ALA A . n A 1 146 THR 146 147 147 THR THR A . n A 1 147 VAL 147 148 148 VAL VAL A . n A 1 148 ASP 148 149 149 ASP ASP A . n A 1 149 MSE 149 150 150 MSE MSE A . n A 1 150 ILE 150 151 151 ILE ILE A . n A 1 151 PRO 151 152 152 PRO PRO A . n A 1 152 THR 152 153 153 THR THR A . n A 1 153 LEU 153 154 154 LEU LEU A . n A 1 154 LYS 154 155 155 LYS LYS A . n A 1 155 GLU 155 156 156 GLU GLU A . n A 1 156 GLU 156 157 157 GLU GLU A . n A 1 157 GLU 157 158 158 GLU GLU A . n A 1 158 LYS 158 159 159 LYS LYS A . n A 1 159 ALA 159 160 160 ALA ALA A . n A 1 160 GLN 160 161 161 GLN GLN A . n A 1 161 ILE 161 162 162 ILE ILE A . n A 1 162 MSE 162 163 163 MSE MSE A . n A 1 163 ALA 163 164 164 ALA ALA A . n A 1 164 TRP 164 165 165 TRP TRP A . n A 1 165 LEU 165 166 166 LEU LEU A . n A 1 166 VAL 166 167 167 VAL VAL A . n A 1 167 GLU 167 168 168 GLU GLU A . n A 1 168 ALA 168 169 169 ALA ALA A . n A 1 169 ARG 169 170 170 ARG ARG A . n A 1 170 GLU 170 171 171 GLU GLU A . n A 1 171 PHE 171 172 172 PHE PHE A . n A 1 172 ALA 172 173 173 ALA ALA A . n A 1 173 MSE 173 174 174 MSE MSE A . n A 1 174 ASP 174 175 175 ASP ASP A . n A 1 175 ALA 175 176 176 ALA ALA A . n A 1 176 GLU 176 177 177 GLU GLU A . n A 1 177 ASN 177 178 178 ASN ASN A . n A 1 178 SER 178 179 179 SER SER A . n A 1 179 ASN 179 180 180 ASN ASN A . n A 1 180 LYS 180 181 181 LYS LYS A . n A 1 181 LYS 181 182 182 LYS LYS A . n A 1 182 HIS 182 183 183 HIS HIS A . n A 1 183 ALA 183 184 184 ALA ALA A . n A 1 184 ALA 184 185 185 ALA ALA A . n A 1 185 PHE 185 186 186 PHE PHE A . n A 1 186 GLY 186 187 187 GLY GLY A . n A 1 187 LYS 187 188 188 LYS LYS A . n A 1 188 TYR 188 189 189 TYR TYR A . n A 1 189 LYS 189 190 190 LYS LYS A . n A 1 190 GLY 190 191 191 GLY GLY A . n A 1 191 ARG 191 192 192 ARG ARG A . n A 1 192 ILE 192 193 193 ILE ILE A . n A 1 193 ASN 193 194 194 ASN ASN A . n A 1 194 ASN 194 195 195 ASN ASN A . n A 1 195 TYR 195 196 196 TYR TYR A . n A 1 196 LEU 196 197 197 LEU LEU A . n A 1 197 SER 197 198 198 SER SER A . n A 1 198 LYS 198 199 199 LYS LYS A . n A 1 199 ARG 199 200 200 ARG ARG A . n A 1 200 GLY 200 201 201 GLY GLY A . n A 1 201 TYR 201 202 202 TYR TYR A . n A 1 202 ASP 202 203 203 ASP ASP A . n A 1 203 LEU 203 204 204 LEU LEU A . n A 1 204 VAL 204 205 205 VAL VAL A . n A 1 205 LYS 205 206 206 LYS LYS A . n A 1 206 GLU 206 207 207 GLU GLU A . n A 1 207 ARG 207 208 208 ARG ARG A . n A 1 208 LYS 208 209 209 LYS LYS A . n A 1 209 ALA 209 210 210 ALA ALA A . n A 1 210 TRP 210 211 211 TRP TRP A . n A 1 211 TYR 211 212 212 TYR TYR A . n A 1 212 GLU 212 213 213 GLU GLU A . n A 1 213 ARG 213 214 214 ARG ARG A . n A 1 214 ILE 214 215 215 ILE ILE A . n A 1 215 LYS 215 216 216 LYS LYS A . n A 1 216 ALA 216 217 217 ALA ALA A . n A 1 217 ARG 217 218 218 ARG ARG A . n A 1 218 GLY 218 219 219 GLY GLY A . n A 1 219 GLY 219 220 220 GLY GLY A . n A 1 220 LYS 220 221 ? ? ? A . n A 1 221 ILE 221 222 ? ? ? A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL 1 300 300 CL CL A . C 3 MPD 1 301 301 MPD MPD A . D 4 MRD 1 302 302 MRD MRD A . E 3 MPD 1 303 303 MPD MPD A . F 5 PO4 1 304 304 PO4 PO4 A . G 5 PO4 1 305 305 PO4 PO4 A . H 5 PO4 1 306 306 PO4 PO4 A . I 5 PO4 1 307 307 PO4 PO4 A . J 5 PO4 1 308 308 PO4 PO4 A . K 5 PO4 1 309 309 PO4 PO4 A . L 5 PO4 1 310 310 PO4 PO4 A . M 6 HOH 1 360 360 HOH HOH A . M 6 HOH 2 361 361 HOH HOH A . M 6 HOH 3 362 362 HOH HOH A . M 6 HOH 4 363 363 HOH HOH A . M 6 HOH 5 364 364 HOH HOH A . M 6 HOH 6 365 365 HOH HOH A . M 6 HOH 7 366 366 HOH HOH A . M 6 HOH 8 367 367 HOH HOH A . M 6 HOH 9 368 368 HOH HOH A . M 6 HOH 10 369 369 HOH HOH A . M 6 HOH 11 370 370 HOH HOH A . M 6 HOH 12 371 371 HOH HOH A . M 6 HOH 13 372 372 HOH HOH A . M 6 HOH 14 373 373 HOH HOH A . M 6 HOH 15 374 374 HOH HOH A . M 6 HOH 16 375 375 HOH HOH A . M 6 HOH 17 376 376 HOH HOH A . M 6 HOH 18 377 377 HOH HOH A . M 6 HOH 19 378 378 HOH HOH A . M 6 HOH 20 379 379 HOH HOH A . M 6 HOH 21 380 380 HOH HOH A . M 6 HOH 22 381 381 HOH HOH A . M 6 HOH 23 382 382 HOH HOH A . M 6 HOH 24 383 383 HOH HOH A . M 6 HOH 25 384 384 HOH HOH A . M 6 HOH 26 385 385 HOH HOH A . M 6 HOH 27 386 386 HOH HOH A . M 6 HOH 28 387 387 HOH HOH A . M 6 HOH 29 388 388 HOH HOH A . M 6 HOH 30 389 389 HOH HOH A . M 6 HOH 31 390 390 HOH HOH A . M 6 HOH 32 391 391 HOH HOH A . M 6 HOH 33 392 392 HOH HOH A . M 6 HOH 34 393 393 HOH HOH A . M 6 HOH 35 394 394 HOH HOH A . M 6 HOH 36 395 395 HOH HOH A . M 6 HOH 37 396 396 HOH HOH A . M 6 HOH 38 397 397 HOH HOH A . M 6 HOH 39 398 398 HOH HOH A . M 6 HOH 40 399 399 HOH HOH A . M 6 HOH 41 400 400 HOH HOH A . M 6 HOH 42 401 401 HOH HOH A . M 6 HOH 43 402 402 HOH HOH A . M 6 HOH 44 403 403 HOH HOH A . M 6 HOH 45 404 404 HOH HOH A . M 6 HOH 46 405 405 HOH HOH A . M 6 HOH 47 406 406 HOH HOH A . M 6 HOH 48 407 407 HOH HOH A . M 6 HOH 49 408 408 HOH HOH A . M 6 HOH 50 409 409 HOH HOH A . M 6 HOH 51 410 410 HOH HOH A . M 6 HOH 52 411 411 HOH HOH A . M 6 HOH 53 412 412 HOH HOH A . M 6 HOH 54 413 413 HOH HOH A . M 6 HOH 55 414 414 HOH HOH A . M 6 HOH 56 415 415 HOH HOH A . M 6 HOH 57 416 416 HOH HOH A . M 6 HOH 58 417 417 HOH HOH A . M 6 HOH 59 418 418 HOH HOH A . M 6 HOH 60 419 419 HOH HOH A . M 6 HOH 61 420 420 HOH HOH A . M 6 HOH 62 421 421 HOH HOH A . M 6 HOH 63 422 422 HOH HOH A . M 6 HOH 64 423 423 HOH HOH A . M 6 HOH 65 424 424 HOH HOH A . M 6 HOH 66 425 425 HOH HOH A . M 6 HOH 67 426 426 HOH HOH A . M 6 HOH 68 427 427 HOH HOH A . M 6 HOH 69 428 428 HOH HOH A . M 6 HOH 70 429 429 HOH HOH A . M 6 HOH 71 430 430 HOH HOH A . M 6 HOH 72 431 431 HOH HOH A . M 6 HOH 73 432 432 HOH HOH A . M 6 HOH 74 433 433 HOH HOH A . M 6 HOH 75 434 434 HOH HOH A . M 6 HOH 76 435 435 HOH HOH A . M 6 HOH 77 436 436 HOH HOH A . M 6 HOH 78 437 437 HOH HOH A . M 6 HOH 79 438 438 HOH HOH A . M 6 HOH 80 439 439 HOH HOH A . M 6 HOH 81 440 440 HOH HOH A . M 6 HOH 82 441 441 HOH HOH A . M 6 HOH 83 442 442 HOH HOH A . M 6 HOH 84 443 443 HOH HOH A . M 6 HOH 85 444 444 HOH HOH A . M 6 HOH 86 445 445 HOH HOH A . M 6 HOH 87 446 446 HOH HOH A . M 6 HOH 88 447 447 HOH HOH A . M 6 HOH 89 448 448 HOH HOH A . M 6 HOH 90 449 449 HOH HOH A . M 6 HOH 91 450 450 HOH HOH A . M 6 HOH 92 451 451 HOH HOH A . M 6 HOH 93 452 452 HOH HOH A . M 6 HOH 94 453 453 HOH HOH A . M 6 HOH 95 454 454 HOH HOH A . M 6 HOH 96 455 455 HOH HOH A . M 6 HOH 97 456 456 HOH HOH A . M 6 HOH 98 457 457 HOH HOH A . M 6 HOH 99 458 458 HOH HOH A . M 6 HOH 100 459 459 HOH HOH A . M 6 HOH 101 460 460 HOH HOH A . M 6 HOH 102 461 461 HOH HOH A . M 6 HOH 103 462 462 HOH HOH A . M 6 HOH 104 463 463 HOH HOH A . M 6 HOH 105 464 464 HOH HOH A . M 6 HOH 106 465 465 HOH HOH A . M 6 HOH 107 466 466 HOH HOH A . M 6 HOH 108 467 467 HOH HOH A . M 6 HOH 109 468 468 HOH HOH A . M 6 HOH 110 469 469 HOH HOH A . M 6 HOH 111 470 470 HOH HOH A . M 6 HOH 112 471 471 HOH HOH A . M 6 HOH 113 472 472 HOH HOH A . M 6 HOH 114 473 473 HOH HOH A . M 6 HOH 115 474 474 HOH HOH A . M 6 HOH 116 475 475 HOH HOH A . M 6 HOH 117 476 476 HOH HOH A . M 6 HOH 118 477 477 HOH HOH A . M 6 HOH 119 478 478 HOH HOH A . M 6 HOH 120 479 479 HOH HOH A . M 6 HOH 121 480 480 HOH HOH A . M 6 HOH 122 481 481 HOH HOH A . M 6 HOH 123 482 482 HOH HOH A . M 6 HOH 124 483 483 HOH HOH A . M 6 HOH 125 484 484 HOH HOH A . M 6 HOH 126 485 485 HOH HOH A . M 6 HOH 127 486 486 HOH HOH A . M 6 HOH 128 487 487 HOH HOH A . M 6 HOH 129 488 488 HOH HOH A . M 6 HOH 130 489 489 HOH HOH A . M 6 HOH 131 490 490 HOH HOH A . M 6 HOH 132 491 491 HOH HOH A . M 6 HOH 133 492 492 HOH HOH A . M 6 HOH 134 493 493 HOH HOH A . M 6 HOH 135 494 494 HOH HOH A . M 6 HOH 136 495 495 HOH HOH A . M 6 HOH 137 496 496 HOH HOH A . M 6 HOH 138 497 497 HOH HOH A . M 6 HOH 139 498 498 HOH HOH A . M 6 HOH 140 499 499 HOH HOH A . M 6 HOH 141 500 500 HOH HOH A . M 6 HOH 142 501 501 HOH HOH A . M 6 HOH 143 502 502 HOH HOH A . M 6 HOH 144 503 503 HOH HOH A . M 6 HOH 145 504 504 HOH HOH A . M 6 HOH 146 505 505 HOH HOH A . M 6 HOH 147 506 506 HOH HOH A . M 6 HOH 148 507 507 HOH HOH A . M 6 HOH 149 508 508 HOH HOH A . M 6 HOH 150 509 509 HOH HOH A . M 6 HOH 151 510 510 HOH HOH A . M 6 HOH 152 511 511 HOH HOH A . M 6 HOH 153 512 512 HOH HOH A . M 6 HOH 154 513 513 HOH HOH A . M 6 HOH 155 514 514 HOH HOH A . M 6 HOH 156 515 515 HOH HOH A . M 6 HOH 157 516 516 HOH HOH A . M 6 HOH 158 517 517 HOH HOH A . M 6 HOH 159 518 518 HOH HOH A . M 6 HOH 160 519 519 HOH HOH A . M 6 HOH 161 520 520 HOH HOH A . M 6 HOH 162 521 521 HOH HOH A . M 6 HOH 163 522 522 HOH HOH A . M 6 HOH 164 523 523 HOH HOH A . M 6 HOH 165 524 524 HOH HOH A . M 6 HOH 166 525 525 HOH HOH A . M 6 HOH 167 526 526 HOH HOH A . M 6 HOH 168 527 527 HOH HOH A . M 6 HOH 169 528 528 HOH HOH A . M 6 HOH 170 529 529 HOH HOH A . M 6 HOH 171 530 530 HOH HOH A . M 6 HOH 172 531 531 HOH HOH A . M 6 HOH 173 532 532 HOH HOH A . M 6 HOH 174 533 533 HOH HOH A . M 6 HOH 175 534 534 HOH HOH A . M 6 HOH 176 535 535 HOH HOH A . M 6 HOH 177 536 536 HOH HOH A . M 6 HOH 178 537 537 HOH HOH A . M 6 HOH 179 538 538 HOH HOH A . M 6 HOH 180 539 539 HOH HOH A . M 6 HOH 181 540 540 HOH HOH A . M 6 HOH 182 541 541 HOH HOH A . M 6 HOH 183 542 542 HOH HOH A . M 6 HOH 184 543 543 HOH HOH A . M 6 HOH 185 544 544 HOH HOH A . M 6 HOH 186 545 545 HOH HOH A . M 6 HOH 187 546 546 HOH HOH A . M 6 HOH 188 547 547 HOH HOH A . M 6 HOH 189 548 548 HOH HOH A . M 6 HOH 190 549 549 HOH HOH A . M 6 HOH 191 550 550 HOH HOH A . M 6 HOH 192 551 551 HOH HOH A . M 6 HOH 193 552 552 HOH HOH A . M 6 HOH 194 553 553 HOH HOH A . M 6 HOH 195 554 554 HOH HOH A . M 6 HOH 196 555 555 HOH HOH A . M 6 HOH 197 556 556 HOH HOH A . M 6 HOH 198 557 557 HOH HOH A . M 6 HOH 199 558 558 HOH HOH A . M 6 HOH 200 559 559 HOH HOH A . M 6 HOH 201 560 560 HOH HOH A . M 6 HOH 202 561 561 HOH HOH A . M 6 HOH 203 562 562 HOH HOH A . M 6 HOH 204 563 563 HOH HOH A . M 6 HOH 205 564 564 HOH HOH A . M 6 HOH 206 565 565 HOH HOH A . M 6 HOH 207 566 566 HOH HOH A . M 6 HOH 208 567 567 HOH HOH A . M 6 HOH 209 568 568 HOH HOH A . M 6 HOH 210 569 569 HOH HOH A . M 6 HOH 211 570 570 HOH HOH A . M 6 HOH 212 571 571 HOH HOH A . M 6 HOH 213 572 572 HOH HOH A . M 6 HOH 214 573 573 HOH HOH A . M 6 HOH 215 574 574 HOH HOH A . M 6 HOH 216 575 575 HOH HOH A . M 6 HOH 217 576 576 HOH HOH A . M 6 HOH 218 577 577 HOH HOH A . M 6 HOH 219 578 578 HOH HOH A . M 6 HOH 220 579 579 HOH HOH A . M 6 HOH 221 580 580 HOH HOH A . M 6 HOH 222 581 581 HOH HOH A . M 6 HOH 223 582 582 HOH HOH A . M 6 HOH 224 583 583 HOH HOH A . M 6 HOH 225 584 584 HOH HOH A . M 6 HOH 226 585 585 HOH HOH A . M 6 HOH 227 586 586 HOH HOH A . M 6 HOH 228 587 587 HOH HOH A . M 6 HOH 229 588 588 HOH HOH A . M 6 HOH 230 589 589 HOH HOH A . M 6 HOH 231 590 590 HOH HOH A . M 6 HOH 232 591 591 HOH HOH A . M 6 HOH 233 592 592 HOH HOH A . M 6 HOH 234 593 593 HOH HOH A . M 6 HOH 235 594 594 HOH HOH A . M 6 HOH 236 595 595 HOH HOH A . M 6 HOH 237 596 596 HOH HOH A . M 6 HOH 238 597 597 HOH HOH A . M 6 HOH 239 598 598 HOH HOH A . M 6 HOH 240 599 599 HOH HOH A . M 6 HOH 241 600 600 HOH HOH A . M 6 HOH 242 601 601 HOH HOH A . M 6 HOH 243 602 602 HOH HOH A . M 6 HOH 244 603 603 HOH HOH A . M 6 HOH 245 604 604 HOH HOH A . M 6 HOH 246 605 605 HOH HOH A . M 6 HOH 247 606 606 HOH HOH A . M 6 HOH 248 607 607 HOH HOH A . M 6 HOH 249 608 608 HOH HOH A . M 6 HOH 250 609 609 HOH HOH A . M 6 HOH 251 610 610 HOH HOH A . M 6 HOH 252 611 611 HOH HOH A . M 6 HOH 253 612 612 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 134 A MSE 135 ? MET SELENOMETHIONINE 2 A MSE 140 A MSE 141 ? MET SELENOMETHIONINE 3 A MSE 149 A MSE 150 ? MET SELENOMETHIONINE 4 A MSE 162 A MSE 163 ? MET SELENOMETHIONINE 5 A MSE 173 A MSE 174 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 9990 ? 1 MORE -192 ? 1 'SSA (A^2)' 21690 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 87.1280000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-11-24 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-17 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Author supporting evidence' 4 3 'Structure model' 'Refinement description' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_struct_assembly_auth_evidence 2 3 'Structure model' software 3 4 'Structure model' software 4 4 'Structure model' struct_conn 5 5 'Structure model' database_2 6 5 'Structure model' struct_ref_seq_dif 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 34.5170 28.5240 22.7720 0.1045 0.2206 0.1542 0.0135 0.0373 0.0116 10.5527 0.7455 3.8708 1.7724 -4.1117 0.2971 0.0542 0.0939 -0.1481 0.6656 0.0022 -0.0562 -0.0304 -0.1502 -0.1741 'X-RAY DIFFRACTION' 2 ? refined 25.3220 31.6420 21.1730 0.0798 0.2048 0.0574 0.0102 0.0204 0.0370 2.8787 5.6607 1.6719 -0.0050 0.2216 0.2768 0.0078 -0.1255 0.1178 0.4084 0.0918 0.0745 -0.5509 -0.0470 -0.1235 'X-RAY DIFFRACTION' 3 ? refined 15.6190 22.3520 30.7760 0.0576 0.1094 0.1165 -0.0179 -0.0020 -0.0370 4.6903 1.8130 1.2201 1.8711 -1.1104 -0.6919 -0.1087 0.0761 0.0326 0.3367 -0.2945 0.0427 -0.1542 0.1778 -0.1867 'X-RAY DIFFRACTION' 4 ? refined 14.2290 39.4820 36.5750 0.0860 0.0951 0.1225 0.0008 -0.0052 0.0156 1.1158 0.6134 1.0976 -0.6911 -0.1122 -0.0448 0.0267 -0.0087 -0.0180 0.0901 0.1419 -0.0490 -0.0152 -0.1777 -0.0329 'X-RAY DIFFRACTION' 5 ? refined -1.4650 53.8790 35.1410 0.1244 0.0517 0.1322 0.0403 -0.0132 0.0163 1.8244 5.1178 1.4097 -1.2225 0.9078 -1.4282 -0.1812 0.2047 -0.0234 -0.0387 0.2145 0.0878 -0.1721 -0.1655 -0.0546 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A -5 A 25 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 A 26 A 49 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 A 50 A 98 ? . . . . ? 'X-RAY DIFFRACTION' 4 4 A 99 A 189 ? . . . . ? 'X-RAY DIFFRACTION' 5 5 A 190 A 220 ? . . . . ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.5.0102 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SOLVE . ? program 'Tom Terwilliger' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? 7 # _pdbx_entry_details.entry_id 3KDW _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;THE CRYSTALLIZATION REAGENT CONTAINED A RACEMIC MIXTURE (4R/4S) OF 2-METHYL-2,4-PENTANEDIOL (MPD) ONE OF THE SOLVENT SITES HAS BEEN MODELED AS MIXTURE OF BOTH ENANTIOMERS RESID 301 (4S - MPD) AND RESID 302 (4R - MRD). ; _pdbx_entry_details.sequence_details 'SEQUENCE THIS CONSTRUCT (RESIDUES 21-222) WAS EXPRESSED WITH THE N-TERMINAL PURIFICATION TAG MGSDKIHHHHHHENLYFQG.' _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CB _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 GLU _pdbx_validate_rmsd_bond.auth_seq_id_1 171 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CG _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 GLU _pdbx_validate_rmsd_bond.auth_seq_id_2 171 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.403 _pdbx_validate_rmsd_bond.bond_target_value 1.517 _pdbx_validate_rmsd_bond.bond_deviation -0.114 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.019 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASN -5 ? CG ? A ASN 14 CG 2 1 Y 1 A ASN -5 ? OD1 ? A ASN 14 OD1 3 1 Y 1 A ASN -5 ? ND2 ? A ASN 14 ND2 4 1 Y 1 A LYS 39 ? CD ? A LYS 38 CD 5 1 Y 1 A LYS 39 ? CE ? A LYS 38 CE 6 1 Y 1 A LYS 39 ? NZ ? A LYS 38 NZ 7 1 Y 1 A LYS 43 ? CD ? A LYS 42 CD 8 1 Y 1 A LYS 43 ? CE ? A LYS 42 CE 9 1 Y 1 A LYS 43 ? NZ ? A LYS 42 NZ 10 1 Y 1 A LYS 47 ? CE ? A LYS 46 CE 11 1 Y 1 A LYS 47 ? NZ ? A LYS 46 NZ 12 1 Y 1 A LYS 126 ? CE ? A LYS 125 CE 13 1 Y 1 A LYS 126 ? NZ ? A LYS 125 NZ 14 1 Y 1 A LYS 145 ? NZ ? A LYS 144 NZ 15 1 Y 1 A LYS 155 ? CE ? A LYS 154 CE 16 1 Y 1 A LYS 155 ? NZ ? A LYS 154 NZ 17 1 Y 1 A LYS 206 ? CD ? A LYS 205 CD 18 1 Y 1 A LYS 206 ? CE ? A LYS 205 CE 19 1 Y 1 A LYS 206 ? NZ ? A LYS 205 NZ 20 1 Y 1 A LYS 209 ? CD ? A LYS 208 CD 21 1 Y 1 A LYS 209 ? CE ? A LYS 208 CE 22 1 Y 1 A LYS 209 ? NZ ? A LYS 208 NZ 23 1 Y 1 A LYS 216 ? CE ? A LYS 215 CE 24 1 Y 1 A LYS 216 ? NZ ? A LYS 215 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -18 ? A MSE 1 2 1 Y 1 A GLY -17 ? A GLY 2 3 1 Y 1 A SER -16 ? A SER 3 4 1 Y 1 A ASP -15 ? A ASP 4 5 1 Y 1 A LYS -14 ? A LYS 5 6 1 Y 1 A ILE -13 ? A ILE 6 7 1 Y 1 A HIS -12 ? A HIS 7 8 1 Y 1 A HIS -11 ? A HIS 8 9 1 Y 1 A HIS -10 ? A HIS 9 10 1 Y 1 A HIS -9 ? A HIS 10 11 1 Y 1 A HIS -8 ? A HIS 11 12 1 Y 1 A HIS -7 ? A HIS 12 13 1 Y 1 A GLU -6 ? A GLU 13 14 1 Y 1 A LYS 221 ? A LYS 220 15 1 Y 1 A ILE 222 ? A ILE 221 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 4 '(4R)-2-METHYLPENTANE-2,4-DIOL' MRD 5 'PHOSPHATE ION' PO4 6 water HOH # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'gel filtration' ? 2 1 'light scattering' ? #