HEADER ISOMERASE 24-OCT-09 3KE7 TITLE CRYSTAL STRUCTURE OF PUTATIVE KETOSTEROID ISOMERASE (YP_001303366.1) TITLE 2 FROM PARABACTEROIDES DISTASONIS ATCC 8503 AT 1.45 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE KETOSTEROID ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 22-154; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PARABACTEROIDES DISTASONIS ATCC 8503; SOURCE 3 ORGANISM_TAXID: 435591; SOURCE 4 STRAIN: ATCC 8503 / DSM 20701 / NCTC 11152; SOURCE 5 GENE: BDI_2009; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PUTATIVE KETOSTEROID ISOMERASE, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 3 ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 3KE7 1 REMARK SEQADV REVDAT 4 17-JUL-19 3KE7 1 REMARK LINK REVDAT 3 25-OCT-17 3KE7 1 REMARK REVDAT 2 13-JUL-11 3KE7 1 VERSN REVDAT 1 03-NOV-09 3KE7 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE KETOSTEROID ISOMERASE JRNL TITL 2 (YP_001303366.1) FROM PARABACTEROIDES DISTASONIS ATCC 8503 JRNL TITL 3 AT 1.45 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 39881 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2717 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 143 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2129 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 247 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 13.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.37000 REMARK 3 B22 (A**2) : -0.47000 REMARK 3 B33 (A**2) : 0.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.61000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.069 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.070 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.043 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.513 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2391 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1626 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3285 ; 1.644 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4036 ; 0.917 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 314 ; 4.993 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 111 ;32.952 ;25.225 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 437 ;12.212 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;24.222 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 371 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2641 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 448 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1420 ; 1.799 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 545 ; 0.474 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2353 ; 2.897 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 971 ; 4.164 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 905 ; 5.784 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 23 A 154 REMARK 3 ORIGIN FOR THE GROUP (A): 6.8910 48.9950 15.5000 REMARK 3 T TENSOR REMARK 3 T11: 0.0652 T22: 0.0526 REMARK 3 T33: 0.0169 T12: 0.0041 REMARK 3 T13: 0.0267 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 0.5326 L22: 0.7109 REMARK 3 L33: 0.7858 L12: 0.1742 REMARK 3 L13: -0.0240 L23: 0.1643 REMARK 3 S TENSOR REMARK 3 S11: 0.0099 S12: -0.0395 S13: 0.0240 REMARK 3 S21: 0.0518 S22: -0.0502 S23: 0.0814 REMARK 3 S31: 0.0245 S32: -0.0742 S33: 0.0403 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 22 B 154 REMARK 3 ORIGIN FOR THE GROUP (A): 24.8080 56.5010 8.8570 REMARK 3 T TENSOR REMARK 3 T11: 0.0562 T22: 0.0692 REMARK 3 T33: 0.0290 T12: -0.0130 REMARK 3 T13: 0.0235 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.7860 L22: 0.3559 REMARK 3 L33: 1.6837 L12: 0.0433 REMARK 3 L13: -0.6123 L23: -0.0912 REMARK 3 S TENSOR REMARK 3 S11: 0.0476 S12: -0.1029 S13: 0.0929 REMARK 3 S21: -0.0328 S22: -0.0266 S23: -0.0594 REMARK 3 S31: -0.0805 S32: 0.2587 S33: -0.0210 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS REMARK 3 ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REMARK 3 REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. REMARK 3 BICINE (BCN) AND GLYCEROL (GOL) FROM THE CRYSTALLIZATION/ REMARK 3 CRYOPROTECTANT SOLUTIONS HAVE BEEN MODELED INTO THE SOLVENT REMARK 3 STRUCTURE. 5. THE ELECTRON DENSITY FOR RESIDUES B119-B122 IS REMARK 3 POOR. 6. THE CONFORMATION OF THE N-TERMINAL RESIDUES PRECEDING REMARK 3 ASN-34 DIFFER CONSIDERABLY BETWEEN THE TWO NCS-RELATED PROTOMERS. REMARK 4 REMARK 4 3KE7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055880. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97805,0.97862 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39881 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 27.077 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : 0.06500 REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.35400 REMARK 200 R SYM FOR SHELL (I) : 0.35400 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4000M (NH4)2SO4, 0.1M BICINE PH 9.0, REMARK 280 NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 37.33000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.44850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 37.33000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.44850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING AND ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY REMARK 300 ANALYSES SUPPORT THE ASSIGNMENT OF A DIMER AS A SIGNIFICANT REMARK 300 OLIGOMERIZATION STATE IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLN A 22 REMARK 465 GLY B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 88 CG CD OE1 NE2 REMARK 470 LEU A 89 CG CD1 CD2 REMARK 470 LEU A 119 CD1 CD2 REMARK 470 SER A 120 OG REMARK 470 ASP A 121 CG OD1 OD2 REMARK 470 ASP A 154 O REMARK 470 GLN B 23 CG CD OE1 NE2 REMARK 470 LYS B 24 CG CD CE NZ REMARK 470 GLU B 27 CG CD OE1 OE2 REMARK 470 ASN B 28 CG OD1 ND2 REMARK 470 ASN B 32 CG OD1 ND2 REMARK 470 GLU B 37 CD OE1 OE2 REMARK 470 GLU B 57 CD OE1 OE2 REMARK 470 SER B 120 OG REMARK 470 ASP B 121 CG OD1 OD2 REMARK 470 LYS B 122 CG CD CE NZ REMARK 470 ASP B 137 CG OD1 OD2 REMARK 470 ASP B 154 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 53 CG - SE - CE ANGL. DEV. = -15.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 30 -106.73 -118.32 REMARK 500 GLN A 106 -110.51 52.55 REMARK 500 GLN A 106 -108.80 50.09 REMARK 500 ASN B 32 47.45 -83.33 REMARK 500 GLN B 106 -111.89 58.36 REMARK 500 SER B 120 -92.34 41.82 REMARK 500 LEU B 153 48.55 -102.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PEG A 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCN A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCN B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 385935 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT (22-154) WAS EXPRESSED WITH THE PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3KE7 A 22 154 UNP A6LDI0 A6LDI0_PARD8 22 154 DBREF 3KE7 B 22 154 UNP A6LDI0 A6LDI0_PARD8 22 154 SEQADV 3KE7 GLY A 0 UNP A6LDI0 EXPRESSION TAG SEQADV 3KE7 GLY B 0 UNP A6LDI0 EXPRESSION TAG SEQRES 1 A 134 GLY GLN GLN LYS ASN MSE GLU ASN LYS THR LEU ASN GLU SEQRES 2 A 134 ASN ILE PRO GLU MSE ILE ILE SER LEU GLU LYS GLU ALA SEQRES 3 A 134 LEU ALA SER THR ASP PRO MSE ALA PHE VAL GLU LEU SER SEQRES 4 A 134 ASP THR ASP VAL ILE TYR PHE ASP PRO SER LEU GLU THR SEQRES 5 A 134 LYS ILE GLU GLY LEU GLU GLN LEU ARG THR TYR TYR LYS SEQRES 6 A 134 GLY MSE GLN LEU PRO PRO ALA ASP HIS PHE ASP MSE ILE SEQRES 7 A 134 ARG PRO VAL VAL GLN VAL ALA GLN ASN ILE ALA VAL LEU SEQRES 8 A 134 THR PHE ASN LEU ASP SER TYR LEU SER ASP LYS VAL ILE SEQRES 9 A 134 LYS TRP ASN CYS THR GLU VAL TYR ARG ARG ASN PRO ASP SEQRES 10 A 134 ASN GLN TRP LYS ILE ILE GLN THR HIS TRP SER TYR VAL SEQRES 11 A 134 LYS PRO LEU ASP SEQRES 1 B 134 GLY GLN GLN LYS ASN MSE GLU ASN LYS THR LEU ASN GLU SEQRES 2 B 134 ASN ILE PRO GLU MSE ILE ILE SER LEU GLU LYS GLU ALA SEQRES 3 B 134 LEU ALA SER THR ASP PRO MSE ALA PHE VAL GLU LEU SER SEQRES 4 B 134 ASP THR ASP VAL ILE TYR PHE ASP PRO SER LEU GLU THR SEQRES 5 B 134 LYS ILE GLU GLY LEU GLU GLN LEU ARG THR TYR TYR LYS SEQRES 6 B 134 GLY MSE GLN LEU PRO PRO ALA ASP HIS PHE ASP MSE ILE SEQRES 7 B 134 ARG PRO VAL VAL GLN VAL ALA GLN ASN ILE ALA VAL LEU SEQRES 8 B 134 THR PHE ASN LEU ASP SER TYR LEU SER ASP LYS VAL ILE SEQRES 9 B 134 LYS TRP ASN CYS THR GLU VAL TYR ARG ARG ASN PRO ASP SEQRES 10 B 134 ASN GLN TRP LYS ILE ILE GLN THR HIS TRP SER TYR VAL SEQRES 11 B 134 LYS PRO LEU ASP MODRES 3KE7 MSE A 26 MET SELENOMETHIONINE MODRES 3KE7 MSE A 38 MET SELENOMETHIONINE MODRES 3KE7 MSE A 53 MET SELENOMETHIONINE MODRES 3KE7 MSE A 87 MET SELENOMETHIONINE MODRES 3KE7 MSE A 97 MET SELENOMETHIONINE MODRES 3KE7 MSE B 26 MET SELENOMETHIONINE MODRES 3KE7 MSE B 38 MET SELENOMETHIONINE MODRES 3KE7 MSE B 53 MET SELENOMETHIONINE MODRES 3KE7 MSE B 87 MET SELENOMETHIONINE MODRES 3KE7 MSE B 97 MET SELENOMETHIONINE HET MSE A 26 8 HET MSE A 38 13 HET MSE A 53 13 HET MSE A 87 13 HET MSE A 97 8 HET MSE B 26 8 HET MSE B 38 18 HET MSE B 53 8 HET MSE B 87 8 HET MSE B 97 8 HET BCN A 2 11 HET GOL A 3 6 HET PEG A 4 6 HET BCN B 1 11 HET SO4 B 5 5 HETNAM MSE SELENOMETHIONINE HETNAM BCN BICINE HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 BCN 2(C6 H13 N O4) FORMUL 4 GOL C3 H8 O3 FORMUL 5 PEG C4 H10 O3 FORMUL 7 SO4 O4 S 2- FORMUL 8 HOH *247(H2 O) HELIX 1 1 ASN A 34 SER A 49 1 16 HELIX 2 2 MSE A 53 LEU A 58 1 6 HELIX 3 3 GLY A 76 GLN A 88 1 13 HELIX 4 4 GLN B 22 ASN B 28 1 7 HELIX 5 5 ASN B 34 SER B 49 1 16 HELIX 6 6 MSE B 53 LEU B 58 1 6 HELIX 7 7 GLY B 76 GLY B 86 1 11 SHEET 1 A 6 ILE A 74 GLU A 75 0 SHEET 2 A 6 SER A 59 PHE A 66 -1 N TYR A 65 O ILE A 74 SHEET 3 A 6 TRP A 140 TYR A 149 1 O ILE A 142 N ASP A 60 SHEET 4 A 6 LYS A 122 ARG A 134 -1 N VAL A 131 O ILE A 143 SHEET 5 A 6 ILE A 108 LEU A 119 -1 N LEU A 111 O GLU A 130 SHEET 6 A 6 HIS A 94 ALA A 105 -1 N ILE A 98 O ASN A 114 SHEET 1 B 6 ILE B 74 GLU B 75 0 SHEET 2 B 6 SER B 59 PHE B 66 -1 N TYR B 65 O ILE B 74 SHEET 3 B 6 TRP B 140 TYR B 149 1 O ILE B 142 N ASP B 60 SHEET 4 B 6 LYS B 122 ARG B 134 -1 N ASN B 127 O SER B 148 SHEET 5 B 6 ILE B 108 LEU B 119 -1 N LEU B 119 O LYS B 122 SHEET 6 B 6 HIS B 94 ALA B 105 -1 N ILE B 98 O ASN B 114 LINK C ASN A 25 N MSE A 26 1555 1555 1.32 LINK C MSE A 26 N GLU A 27 1555 1555 1.32 LINK C GLU A 37 N MSE A 38 1555 1555 1.32 LINK C MSE A 38 N ILE A 39 1555 1555 1.33 LINK C PRO A 52 N MSE A 53 1555 1555 1.32 LINK C MSE A 53 N ALA A 54 1555 1555 1.34 LINK C GLY A 86 N MSE A 87 1555 1555 1.32 LINK C MSE A 87 N GLN A 88 1555 1555 1.32 LINK C ASP A 96 N MSE A 97 1555 1555 1.33 LINK C MSE A 97 N ILE A 98 1555 1555 1.33 LINK C ASN B 25 N MSE B 26 1555 1555 1.32 LINK C MSE B 26 N GLU B 27 1555 1555 1.33 LINK C GLU B 37 N MSE B 38 1555 1555 1.32 LINK C MSE B 38 N ILE B 39 1555 1555 1.33 LINK C PRO B 52 N MSE B 53 1555 1555 1.34 LINK C MSE B 53 N ALA B 54 1555 1555 1.33 LINK C GLY B 86 N MSE B 87 1555 1555 1.34 LINK C MSE B 87 N GLN B 88 1555 1555 1.31 LINK C ASP B 96 N MSE B 97 1555 1555 1.34 LINK C MSE B 97 N ILE B 98 1555 1555 1.34 CISPEP 1 LEU B 89 PRO B 90 0 -0.32 SITE 1 AC1 6 LEU A 47 TYR A 65 TYR A 84 LEU A 115 SITE 2 AC1 6 TRP A 147 HOH A 198 SITE 1 AC2 6 PEG A 4 PRO A 52 LYS A 85 GLN A 88 SITE 2 AC2 6 LEU A 89 PRO A 90 SITE 1 AC3 6 GOL A 3 THR A 50 PRO A 52 MSE A 53 SITE 2 AC3 6 LYS A 85 PRO A 91 SITE 1 AC4 11 LEU B 89 PRO B 91 TRP B 126 TRP B 147 SITE 2 AC4 11 HOH B 201 HOH B 202 HOH B 222 HOH B 227 SITE 3 AC4 11 HOH B 235 HOH B 240 HOH B 254 SITE 1 AC5 5 GLY A 86 MSE A 87 GLN B 22 GLN B 23 SITE 2 AC5 5 LYS B 24 CRYST1 74.660 60.897 52.280 90.00 102.30 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013394 0.000000 0.002920 0.00000 SCALE2 0.000000 0.016421 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019577 0.00000