HEADER HYDROLASE 27-OCT-09 3KF2 TITLE THE HCV NS3/NS4A PROTEASE APO STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYPROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: NS3 PROTEASE DOMAIN, UNP RESIDUES 149-329; COMPND 5 EC: 3.4.21.98; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 19-MER PEPTIDE FROM GENOME POLYPROTEIN; COMPND 10 CHAIN: C, D; COMPND 11 FRAGMENT: NS4A PEPTIDE, UNP RESIDUES 1682-1700; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS; SOURCE 3 ORGANISM_TAXID: 11103; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS; SOURCE 9 ORGANISM_TAXID: 11103; SOURCE 10 OTHER_DETAILS: CHEMICAL SYNTHESIS KEYWDS HCV, NS3, PROTEASE, APO, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.D.LINDBERG,S.NYSTROM,M.D.CUMMINGS REVDAT 3 01-NOV-23 3KF2 1 REMARK REVDAT 2 10-NOV-21 3KF2 1 REMARK SEQADV LINK REVDAT 1 09-MAR-10 3KF2 0 JRNL AUTH M.D.CUMMINGS,J.D.LINDBERG,T.-I.LIN,H.DE KOCK,O.LENZ,E.LILJA, JRNL AUTH 2 S.FELLANDER,V.BARAZNENOK,S.NYSTROM,M.NILSSON,L.VRANG, JRNL AUTH 3 M.EDLUND,A.ROSENQUIST,B.SAMUELSSON,P.RABOISSON,K.SIMMEN JRNL TITL INDUCED-FIT BINDING OF THE MACROCYCLIC NONCOVALENT INHIBITOR JRNL TITL 2 TMC435 TO ITS HCV NS3/NS4A PROTEASE TARGET JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 49 1652 2010 JRNL REFN ISSN 1433-7851 JRNL PMID 20166108 JRNL DOI 10.1002/ANIE.200906696 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 112.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 25152 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1285 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1737 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.3240 REMARK 3 BIN FREE R VALUE SET COUNT : 90 REMARK 3 BIN FREE R VALUE : 0.3610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2740 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 40 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.11000 REMARK 3 B22 (A**2) : -0.11000 REMARK 3 B33 (A**2) : 0.17000 REMARK 3 B12 (A**2) : -0.06000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.245 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.205 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.138 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.200 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2793 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3805 ; 1.565 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 368 ; 6.815 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 93 ;30.746 ;21.720 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 443 ;20.188 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;19.655 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 455 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2072 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1127 ; 0.221 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1901 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 117 ; 0.148 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 36 ; 0.174 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.129 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1879 ; 0.824 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2989 ; 1.485 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1014 ; 2.064 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 816 ; 3.570 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3KF2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1000055911. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9800 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.25 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25152 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 112.509 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : 0.11100 REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.62700 REMARK 200 R SYM FOR SHELL (I) : 0.62700 REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 1.3.3 REMARK 200 STARTING MODEL: PDB ENTRY 2A4G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2M NACL, 50MM MES, 50MM NA/K REMARK 280 PHOSPHATE, 10MM BME, PH 6.2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 112.46200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 64.92997 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 25.18167 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 112.46200 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 64.92997 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 25.18167 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 112.46200 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 64.92997 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 25.18167 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 112.46200 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 64.92997 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 25.18167 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 112.46200 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 64.92997 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 25.18167 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 112.46200 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 64.92997 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 25.18167 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 129.85993 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 50.36333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 129.85993 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 50.36333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 129.85993 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 50.36333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 129.85993 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 50.36333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 129.85993 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 50.36333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 129.85993 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 50.36333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -120.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -10 REMARK 465 ALA A -9 REMARK 465 SER A -8 REMARK 465 MET A -7 REMARK 465 THR A -6 REMARK 465 GLY A -5 REMARK 465 GLY A -4 REMARK 465 GLN A -3 REMARK 465 GLN A -2 REMARK 465 MET A -1 REMARK 465 GLY A 0 REMARK 465 ALA A 1 REMARK 465 PRO A 2 REMARK 465 ILE A 3 REMARK 465 THR A 4 REMARK 465 ALA A 5 REMARK 465 TYR A 6 REMARK 465 ALA A 7 REMARK 465 GLN A 8 REMARK 465 GLN A 9 REMARK 465 THR A 10 REMARK 465 ARG A 11 REMARK 465 GLY A 12 REMARK 465 LEU A 13 REMARK 465 LEU A 14 REMARK 465 GLY A 15 REMARK 465 CYS A 16 REMARK 465 ILE A 17 REMARK 465 ILE A 18 REMARK 465 THR A 19 REMARK 465 SER A 20 REMARK 465 LEU A 21 REMARK 465 THR A 22 REMARK 465 GLY A 23 REMARK 465 ARG A 24 REMARK 465 ASP A 25 REMARK 465 LYS A 26 REMARK 465 ASN A 27 REMARK 465 GLY A 182 REMARK 465 SER A 183 REMARK 465 HIS A 184 REMARK 465 HIS A 185 REMARK 465 HIS A 186 REMARK 465 HIS A 187 REMARK 465 HIS A 188 REMARK 465 HIS A 189 REMARK 465 LYS C 19 REMARK 465 LYS C 20 REMARK 465 ILE C 37 REMARK 465 ILE C 38 REMARK 465 PRO C 39 REMARK 465 LYS C 40 REMARK 465 LYS C 41 REMARK 465 MET B -10 REMARK 465 ALA B -9 REMARK 465 SER B -8 REMARK 465 MET B -7 REMARK 465 THR B -6 REMARK 465 GLY B -5 REMARK 465 GLY B -4 REMARK 465 GLN B -3 REMARK 465 GLN B -2 REMARK 465 MET B -1 REMARK 465 GLY B 0 REMARK 465 GLY B 182 REMARK 465 SER B 183 REMARK 465 HIS B 184 REMARK 465 HIS B 185 REMARK 465 HIS B 186 REMARK 465 HIS B 187 REMARK 465 HIS B 188 REMARK 465 HIS B 189 REMARK 465 LYS D 19 REMARK 465 LYS D 41 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 129 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 901 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 97 SG REMARK 620 2 CYS A 99 SG 96.4 REMARK 620 3 CYS A 145 SG 107.1 120.7 REMARK 620 4 HOH A 190 O 106.2 110.5 113.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 902 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 97 SG REMARK 620 2 CYS B 99 SG 95.4 REMARK 620 3 CYS B 145 SG 108.2 115.6 REMARK 620 4 HOH B 190 O 112.6 113.5 110.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 902 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KEE RELATED DB: PDB REMARK 900 HCV NS3/NS4A COMPLEXED WITH NON-COVALENT MACROCYCLIC COMPOUND TMC435 DBREF 3KF2 A 1 181 UNP B1PBR5 B1PBR5_9HEPC 149 329 DBREF 3KF2 C 21 39 UNP Q6GYR8 Q6GYR8_9HEPC 1682 1700 DBREF 3KF2 B 1 181 UNP B1PBR5 B1PBR5_9HEPC 149 329 DBREF 3KF2 D 21 39 UNP Q6GYR8 Q6GYR8_9HEPC 1682 1700 SEQADV 3KF2 MET A -10 UNP B1PBR5 EXPRESSION TAG SEQADV 3KF2 ALA A -9 UNP B1PBR5 EXPRESSION TAG SEQADV 3KF2 SER A -8 UNP B1PBR5 EXPRESSION TAG SEQADV 3KF2 MET A -7 UNP B1PBR5 EXPRESSION TAG SEQADV 3KF2 THR A -6 UNP B1PBR5 EXPRESSION TAG SEQADV 3KF2 GLY A -5 UNP B1PBR5 EXPRESSION TAG SEQADV 3KF2 GLY A -4 UNP B1PBR5 EXPRESSION TAG SEQADV 3KF2 GLN A -3 UNP B1PBR5 EXPRESSION TAG SEQADV 3KF2 GLN A -2 UNP B1PBR5 EXPRESSION TAG SEQADV 3KF2 MET A -1 UNP B1PBR5 EXPRESSION TAG SEQADV 3KF2 GLY A 0 UNP B1PBR5 EXPRESSION TAG SEQADV 3KF2 GLU A 176 UNP B1PBR5 GLY 324 ENGINEERED MUTATION SEQADV 3KF2 GLY A 182 UNP B1PBR5 EXPRESSION TAG SEQADV 3KF2 SER A 183 UNP B1PBR5 EXPRESSION TAG SEQADV 3KF2 HIS A 184 UNP B1PBR5 EXPRESSION TAG SEQADV 3KF2 HIS A 185 UNP B1PBR5 EXPRESSION TAG SEQADV 3KF2 HIS A 186 UNP B1PBR5 EXPRESSION TAG SEQADV 3KF2 HIS A 187 UNP B1PBR5 EXPRESSION TAG SEQADV 3KF2 HIS A 188 UNP B1PBR5 EXPRESSION TAG SEQADV 3KF2 HIS A 189 UNP B1PBR5 EXPRESSION TAG SEQADV 3KF2 LYS C 19 UNP Q6GYR8 EXPRESSION TAG SEQADV 3KF2 LYS C 20 UNP Q6GYR8 EXPRESSION TAG SEQADV 3KF2 LYS C 40 UNP Q6GYR8 EXPRESSION TAG SEQADV 3KF2 LYS C 41 UNP Q6GYR8 EXPRESSION TAG SEQADV 3KF2 MET B -10 UNP B1PBR5 EXPRESSION TAG SEQADV 3KF2 ALA B -9 UNP B1PBR5 EXPRESSION TAG SEQADV 3KF2 SER B -8 UNP B1PBR5 EXPRESSION TAG SEQADV 3KF2 MET B -7 UNP B1PBR5 EXPRESSION TAG SEQADV 3KF2 THR B -6 UNP B1PBR5 EXPRESSION TAG SEQADV 3KF2 GLY B -5 UNP B1PBR5 EXPRESSION TAG SEQADV 3KF2 GLY B -4 UNP B1PBR5 EXPRESSION TAG SEQADV 3KF2 GLN B -3 UNP B1PBR5 EXPRESSION TAG SEQADV 3KF2 GLN B -2 UNP B1PBR5 EXPRESSION TAG SEQADV 3KF2 MET B -1 UNP B1PBR5 EXPRESSION TAG SEQADV 3KF2 GLY B 0 UNP B1PBR5 EXPRESSION TAG SEQADV 3KF2 GLU B 176 UNP B1PBR5 GLY 324 ENGINEERED MUTATION SEQADV 3KF2 GLY B 182 UNP B1PBR5 EXPRESSION TAG SEQADV 3KF2 SER B 183 UNP B1PBR5 EXPRESSION TAG SEQADV 3KF2 HIS B 184 UNP B1PBR5 EXPRESSION TAG SEQADV 3KF2 HIS B 185 UNP B1PBR5 EXPRESSION TAG SEQADV 3KF2 HIS B 186 UNP B1PBR5 EXPRESSION TAG SEQADV 3KF2 HIS B 187 UNP B1PBR5 EXPRESSION TAG SEQADV 3KF2 HIS B 188 UNP B1PBR5 EXPRESSION TAG SEQADV 3KF2 HIS B 189 UNP B1PBR5 EXPRESSION TAG SEQADV 3KF2 LYS D 19 UNP Q6GYR8 EXPRESSION TAG SEQADV 3KF2 LYS D 20 UNP Q6GYR8 EXPRESSION TAG SEQADV 3KF2 LYS D 40 UNP Q6GYR8 EXPRESSION TAG SEQADV 3KF2 LYS D 41 UNP Q6GYR8 EXPRESSION TAG SEQRES 1 A 200 MET ALA SER MET THR GLY GLY GLN GLN MET GLY ALA PRO SEQRES 2 A 200 ILE THR ALA TYR ALA GLN GLN THR ARG GLY LEU LEU GLY SEQRES 3 A 200 CYS ILE ILE THR SER LEU THR GLY ARG ASP LYS ASN GLN SEQRES 4 A 200 VAL GLU GLY GLU VAL GLN ILE VAL SER THR ALA THR GLN SEQRES 5 A 200 THR PHE LEU ALA THR CYS ILE ASN GLY VAL CYS TRP THR SEQRES 6 A 200 VAL TYR HIS GLY ALA GLY THR ARG THR ILE ALA SER PRO SEQRES 7 A 200 LYS GLY PRO VAL ILE GLN MET TYR THR ASN VAL ASP GLN SEQRES 8 A 200 ASP LEU VAL GLY TRP PRO ALA PRO GLN GLY SER ARG SER SEQRES 9 A 200 LEU THR PRO CYS THR CYS GLY SER SER ASP LEU TYR LEU SEQRES 10 A 200 VAL THR ARG HIS ALA ASP VAL ILE PRO VAL ARG ARG ARG SEQRES 11 A 200 GLY ASP SER ARG GLY SER LEU LEU SER PRO ARG PRO ILE SEQRES 12 A 200 SER TYR LEU LYS GLY SER SER GLY GLY PRO LEU LEU CYS SEQRES 13 A 200 PRO ALA GLY HIS ALA VAL GLY LEU PHE ARG ALA ALA VAL SEQRES 14 A 200 CYS THR ARG GLY VAL ALA LYS ALA VAL ASP PHE ILE PRO SEQRES 15 A 200 VAL GLU ASN LEU GLU THR THR MET ARG SER GLY SER HIS SEQRES 16 A 200 HIS HIS HIS HIS HIS SEQRES 1 C 23 LYS LYS GLY SER VAL VAL ILE VAL GLY ARG ILE VAL LEU SEQRES 2 C 23 SER GLY LYS PRO ALA ILE ILE PRO LYS LYS SEQRES 1 B 200 MET ALA SER MET THR GLY GLY GLN GLN MET GLY ALA PRO SEQRES 2 B 200 ILE THR ALA TYR ALA GLN GLN THR ARG GLY LEU LEU GLY SEQRES 3 B 200 CYS ILE ILE THR SER LEU THR GLY ARG ASP LYS ASN GLN SEQRES 4 B 200 VAL GLU GLY GLU VAL GLN ILE VAL SER THR ALA THR GLN SEQRES 5 B 200 THR PHE LEU ALA THR CYS ILE ASN GLY VAL CYS TRP THR SEQRES 6 B 200 VAL TYR HIS GLY ALA GLY THR ARG THR ILE ALA SER PRO SEQRES 7 B 200 LYS GLY PRO VAL ILE GLN MET TYR THR ASN VAL ASP GLN SEQRES 8 B 200 ASP LEU VAL GLY TRP PRO ALA PRO GLN GLY SER ARG SER SEQRES 9 B 200 LEU THR PRO CYS THR CYS GLY SER SER ASP LEU TYR LEU SEQRES 10 B 200 VAL THR ARG HIS ALA ASP VAL ILE PRO VAL ARG ARG ARG SEQRES 11 B 200 GLY ASP SER ARG GLY SER LEU LEU SER PRO ARG PRO ILE SEQRES 12 B 200 SER TYR LEU LYS GLY SER SER GLY GLY PRO LEU LEU CYS SEQRES 13 B 200 PRO ALA GLY HIS ALA VAL GLY LEU PHE ARG ALA ALA VAL SEQRES 14 B 200 CYS THR ARG GLY VAL ALA LYS ALA VAL ASP PHE ILE PRO SEQRES 15 B 200 VAL GLU ASN LEU GLU THR THR MET ARG SER GLY SER HIS SEQRES 16 B 200 HIS HIS HIS HIS HIS SEQRES 1 D 23 LYS LYS GLY SER VAL VAL ILE VAL GLY ARG ILE VAL LEU SEQRES 2 D 23 SER GLY LYS PRO ALA ILE ILE PRO LYS LYS HET ZN A 901 1 HET ZN B 902 1 HETNAM ZN ZINC ION FORMUL 5 ZN 2(ZN 2+) FORMUL 7 HOH *40(H2 O) HELIX 1 1 TYR A 56 GLY A 60 1 5 HELIX 2 2 SER A 133 LEU A 135 5 3 HELIX 3 3 VAL A 172 SER A 181 1 10 HELIX 4 4 GLY B 12 GLY B 23 1 12 HELIX 5 5 TYR B 56 GLY B 60 1 5 HELIX 6 6 SER B 133 LEU B 135 5 3 HELIX 7 7 VAL B 172 ARG B 180 1 9 SHEET 1 A 7 TYR A 75 ASN A 77 0 SHEET 2 A 7 LEU A 82 PRO A 86 -1 O LEU A 82 N ASN A 77 SHEET 3 A 7 VAL A 51 VAL A 55 -1 N CYS A 52 O TRP A 85 SHEET 4 A 7 THR A 42 ILE A 48 -1 N THR A 46 O TRP A 53 SHEET 5 A 7 VAL A 33 SER A 37 -1 N VAL A 36 O PHE A 43 SHEET 6 A 7 VAL C 24 VAL C 30 -1 O GLY C 27 N ILE A 35 SHEET 7 A 7 ALA D 36 ILE D 37 -1 O ALA D 36 N VAL C 30 SHEET 1 B 7 ASP A 103 VAL A 107 0 SHEET 2 B 7 VAL A 113 ARG A 118 -1 O ILE A 114 N LEU A 106 SHEET 3 B 7 ARG A 123 PRO A 131 -1 O SER A 125 N ARG A 117 SHEET 4 B 7 VAL A 163 PRO A 171 -1 O ALA A 164 N ARG A 130 SHEET 5 B 7 ALA A 150 THR A 160 -1 N ALA A 156 O ASP A 168 SHEET 6 B 7 PRO A 142 LEU A 144 -1 N LEU A 143 O VAL A 151 SHEET 7 B 7 ASP A 103 VAL A 107 -1 N TYR A 105 O LEU A 144 SHEET 1 C 7 TYR B 6 GLN B 9 0 SHEET 2 C 7 VAL D 24 VAL D 30 -1 O ARG D 28 N GLN B 8 SHEET 3 C 7 VAL B 33 SER B 37 -1 N ILE B 35 O VAL D 26 SHEET 4 C 7 THR B 42 ILE B 48 -1 O ALA B 45 N GLN B 34 SHEET 5 C 7 VAL B 51 VAL B 55 -1 O TRP B 53 N THR B 46 SHEET 6 C 7 LEU B 82 PRO B 86 -1 O TRP B 85 N CYS B 52 SHEET 7 C 7 TYR B 75 ASN B 77 -1 N ASN B 77 O LEU B 82 SHEET 1 D 7 ASP B 103 VAL B 107 0 SHEET 2 D 7 VAL B 113 ARG B 118 -1 O VAL B 116 N LEU B 104 SHEET 3 D 7 ARG B 123 PRO B 131 -1 O SER B 125 N ARG B 117 SHEET 4 D 7 VAL B 163 PRO B 171 -1 O VAL B 167 N GLY B 124 SHEET 5 D 7 ALA B 150 THR B 160 -1 N ALA B 156 O ASP B 168 SHEET 6 D 7 PRO B 142 LEU B 144 -1 N LEU B 143 O GLY B 152 SHEET 7 D 7 ASP B 103 VAL B 107 -1 N TYR B 105 O LEU B 144 LINK SG CYS A 97 ZN ZN A 901 1555 1555 2.29 LINK SG CYS A 99 ZN ZN A 901 1555 1555 2.41 LINK SG CYS A 145 ZN ZN A 901 1555 1555 2.26 LINK O HOH A 190 ZN ZN A 901 1555 1555 2.31 LINK SG CYS B 97 ZN ZN B 902 1555 1555 2.16 LINK SG CYS B 99 ZN ZN B 902 1555 1555 2.52 LINK SG CYS B 145 ZN ZN B 902 1555 1555 2.40 LINK O HOH B 190 ZN ZN B 902 1555 1555 2.29 SITE 1 AC1 4 CYS A 97 CYS A 99 CYS A 145 HOH A 190 SITE 1 AC2 4 CYS B 97 CYS B 99 CYS B 145 HOH B 190 CRYST1 224.924 224.924 75.545 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004446 0.002567 0.000000 0.00000 SCALE2 0.000000 0.005134 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013237 0.00000