data_3KFR # _entry.id 3KFR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3KFR pdb_00003kfr 10.2210/pdb3kfr/pdb RCSB RCSB055936 ? ? WWPDB D_1000055936 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2AZ8 'HIV-1 PROTEASE NL4-3 IN COMPLEX WITH INHIBITOR, TL-3, WILD TYPE' unspecified PDB 3KF0 'HIV Protease with fragment 4D9 bound' unspecified PDB 3KF1 'HIV Protease (PR) dimer without inhibitor; acetate in exo site' unspecified PDB 3KFN 'HIV Protease (PR) with inhibitor TL-3 and fragment hit 4D9 by soaking' unspecified PDB 3KFP 'HIV Protease (PR) with inhibitor TL-3 bound, and DMSOs in exo site' unspecified PDB 3KFS 'HIV Protease (PR) dimer with inhibitor TL-3 bound and fragment 2F4 in the outside/top of flap' unspecified # _pdbx_database_status.entry_id 3KFR _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-10-27 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _audit_author.name 'Stout, C.D.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Fragment-based screen against HIV protease.' _citation.journal_abbrev 'Chem.Biol.Drug Des.' _citation.journal_volume 75 _citation.page_first 257 _citation.page_last 268 _citation.year 2010 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1747-0277 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20659109 _citation.pdbx_database_id_DOI 10.1111/j.1747-0285.2009.00943.x # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Perryman, A.L.' 1 ? primary 'Zhang, Q.' 2 ? primary 'Soutter, H.H.' 3 ? primary 'Rosenfeld, R.' 4 ? primary 'McRee, D.E.' 5 ? primary 'Olson, A.J.' 6 ? primary 'Elder, J.E.' 7 ? primary 'David Stout, C.' 8 ? # _cell.length_a 28.720 _cell.length_b 65.570 _cell.length_c 92.360 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3KFR _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 3KFR _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 19 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Protease 10831.833 2 3.4.23.16 ? ? ? 2 non-polymer syn ;benzyl [(1S,4S,7S,8R,9R,10S,13S,16S)-7,10-dibenzyl-8,9-dihydroxy-1,16-dimethyl-4,13-bis(1-methylethyl)-2,5,12,15,18-pentaoxo-20-phenyl-19-oxa-3,6,11,14,17-pentaazaicos-1-yl]carbamate ; 909.077 1 ? ? ? ? 3 non-polymer syn BETA-MERCAPTOETHANOL 78.133 2 ? ? ? ? 4 non-polymer syn '1H-indole-6-carboxylic acid' 161.157 1 ? ? ? ? 5 water nat water 18.015 169 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;PQITLWKRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF ; _entity_poly.pdbx_seq_one_letter_code_can ;PQITLWKRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 GLN n 1 3 ILE n 1 4 THR n 1 5 LEU n 1 6 TRP n 1 7 LYS n 1 8 ARG n 1 9 PRO n 1 10 LEU n 1 11 VAL n 1 12 THR n 1 13 ILE n 1 14 LYS n 1 15 ILE n 1 16 GLY n 1 17 GLY n 1 18 GLN n 1 19 LEU n 1 20 LYS n 1 21 GLU n 1 22 ALA n 1 23 LEU n 1 24 LEU n 1 25 ASP n 1 26 THR n 1 27 GLY n 1 28 ALA n 1 29 ASP n 1 30 ASP n 1 31 THR n 1 32 VAL n 1 33 LEU n 1 34 GLU n 1 35 GLU n 1 36 MET n 1 37 ASN n 1 38 LEU n 1 39 PRO n 1 40 GLY n 1 41 ARG n 1 42 TRP n 1 43 LYS n 1 44 PRO n 1 45 LYS n 1 46 MET n 1 47 ILE n 1 48 GLY n 1 49 GLY n 1 50 ILE n 1 51 GLY n 1 52 GLY n 1 53 PHE n 1 54 ILE n 1 55 LYS n 1 56 VAL n 1 57 ARG n 1 58 GLN n 1 59 TYR n 1 60 ASP n 1 61 GLN n 1 62 ILE n 1 63 LEU n 1 64 ILE n 1 65 GLU n 1 66 ILE n 1 67 CYS n 1 68 GLY n 1 69 HIS n 1 70 LYS n 1 71 ALA n 1 72 ILE n 1 73 GLY n 1 74 THR n 1 75 VAL n 1 76 LEU n 1 77 VAL n 1 78 GLY n 1 79 PRO n 1 80 THR n 1 81 PRO n 1 82 VAL n 1 83 ASN n 1 84 ILE n 1 85 ILE n 1 86 GLY n 1 87 ARG n 1 88 ASN n 1 89 LEU n 1 90 LEU n 1 91 THR n 1 92 GLN n 1 93 ILE n 1 94 GLY n 1 95 CYS n 1 96 THR n 1 97 LEU n 1 98 ASN n 1 99 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene POL _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain R8 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Human immunodeficiency virus 1' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11676 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21.DE3 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'PET 21A+' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q903N5_9HIV1 _struct_ref.pdbx_db_accession Q903N5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PQITLWRRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3KFR A 1 ? 99 ? Q903N5 1 ? 99 ? 1 99 2 1 3KFR B 1 ? 99 ? Q903N5 1 ? 99 ? 1 99 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3KFR LYS A 7 ? UNP Q903N5 ARG 7 'engineered mutation' 7 1 2 3KFR LYS B 7 ? UNP Q903N5 ARG 7 'engineered mutation' 7 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1F1 non-polymer . '1H-indole-6-carboxylic acid' ? 'C9 H7 N O2' 161.157 3TL peptide-like . ;benzyl [(1S,4S,7S,8R,9R,10S,13S,16S)-7,10-dibenzyl-8,9-dihydroxy-1,16-dimethyl-4,13-bis(1-methylethyl)-2,5,12,15,18-pentaoxo-20-phenyl-19-oxa-3,6,11,14,17-pentaazaicos-1-yl]carbamate ; 'TL-3, C2 symmetric inhibitor' 'C50 H64 N6 O10' 909.077 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BME non-polymer . BETA-MERCAPTOETHANOL ? 'C2 H6 O S' 78.133 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3KFR _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.01 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 38.72 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.pH 5.8 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '0.5 M KSCN, 0.1 M MES-HCL, pH 5.8, 10% DMSO, VAPOR DIFFUSION, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2008-12-08 _diffrn_detector.details 'Rh coated flat mirror' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Side scattering I-beam bent single crystal; asymmetric cut 4.9650 deg.' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97946 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL7-1' _diffrn_source.pdbx_wavelength_list 0.97946 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL7-1 # _reflns.entry_id 3KFR _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.d_resolution_high 1.15 _reflns.d_resolution_low 25.3 _reflns.number_all 63048 _reflns.number_obs 61661 _reflns.percent_possible_obs 97.8 _reflns.pdbx_Rmerge_I_obs 0.051 _reflns.pdbx_Rsym_value 0.051 _reflns.pdbx_netI_over_sigmaI 6.7 _reflns.B_iso_Wilson_estimate 12.0 _reflns.pdbx_redundancy 3.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.15 _reflns_shell.d_res_low 1.18 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 96.6 _reflns_shell.Rmerge_I_obs 0.800 _reflns_shell.meanI_over_sigI_obs 0.9 _reflns_shell.pdbx_Rsym_value 0.800 _reflns_shell.pdbx_redundancy 3.9 _reflns_shell.number_unique_all 4432 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3KFR _refine.ls_d_res_high 1.300 _refine.ls_d_res_low 25.300 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.000 _refine.ls_number_reflns_obs 42972 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS; U VALUES: REFINED INDIVIDUALLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.184 _refine.ls_R_factor_R_work 0.183 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.207 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 2151 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 16.693 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model Anisotropic _refine.aniso_B[1][1] 0.090 _refine.aniso_B[2][2] -0.020 _refine.aniso_B[3][3] -0.070 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.957 _refine.correlation_coeff_Fo_to_Fc_free 0.949 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.065 _refine.pdbx_overall_ESU_R_Free 0.057 _refine.overall_SU_ML 0.032 _refine.overall_SU_B 1.626 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'HIV PR dimer generated from monomer with TL-3 bound in 2AZ8' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 46.65 _refine.B_iso_min 7.37 _refine.occupancy_max 1.00 _refine.occupancy_min 1.00 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1520 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 86 _refine_hist.number_atoms_solvent 169 _refine_hist.number_atoms_total 1775 _refine_hist.d_res_high 1.300 _refine_hist.d_res_low 25.300 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1634 0.010 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2208 1.437 2.043 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 196 6.481 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 54 36.783 24.815 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 288 10.527 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 8 13.812 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 255 0.086 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1182 0.007 0.021 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 976 1.182 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1586 1.928 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 658 2.434 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 622 3.801 4.500 ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 1634 1.290 3.000 ? 'X-RAY DIFFRACTION' ? r_sphericity_free 169 4.003 3.000 ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded 1606 3.197 3.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.300 _refine_ls_shell.d_res_low 1.334 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 97.650 _refine_ls_shell.number_reflns_R_work 2915 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.212 _refine_ls_shell.R_factor_R_free 0.263 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 154 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 3069 _refine_ls_shell.number_reflns_obs 2915 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3KFR _struct.title 'HIV Protease (PR) dimer with inhibitor TL-3 bound and fragment 1F1 in the outside/top of flap' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3KFR _struct_keywords.text 'HIV-1, PROTEASE, Aspartyl protease, HYDROLASE-HYDROLASE INHIBITOR COMPLEX' _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 3 ? G N N 5 ? H N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 86 ? THR A 91 ? GLY A 86 THR A 91 1 ? 6 HELX_P HELX_P2 2 GLN A 92 ? GLY A 94 ? GLN A 92 GLY A 94 5 ? 3 HELX_P HELX_P3 3 GLY B 86 ? THR B 91 ? GLY B 86 THR B 91 1 ? 6 HELX_P HELX_P4 4 GLN B 92 ? GLY B 94 ? GLN B 92 GLY B 94 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? A CYS 67 SG ? ? ? 1_555 D BME . S2 ? ? A CYS 67 A BME 202 1_555 ? ? ? ? ? ? ? 2.341 ? ? covale2 covale none ? B CYS 67 SG ? ? ? 1_555 F BME . S2 ? ? B CYS 67 B BME 203 1_555 ? ? ? ? ? ? ? 2.137 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 8 ? C ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? anti-parallel B 5 6 ? parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? parallel C 4 5 ? anti-parallel C 5 6 ? parallel C 6 7 ? anti-parallel C 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 2 ? ILE A 3 ? GLN A 2 ILE A 3 A 2 THR B 96 ? ASN B 98 ? THR B 96 ASN B 98 A 3 THR A 96 ? ASN A 98 ? THR A 96 ASN A 98 A 4 GLN B 2 ? ILE B 3 ? GLN B 2 ILE B 3 B 1 LYS A 43 ? GLY A 49 ? LYS A 43 GLY A 49 B 2 GLY A 52 ? ILE A 66 ? GLY A 52 ILE A 66 B 3 HIS A 69 ? VAL A 77 ? HIS A 69 VAL A 77 B 4 VAL A 32 ? LEU A 33 ? VAL A 32 LEU A 33 B 5 ILE A 84 ? ILE A 85 ? ILE A 84 ILE A 85 B 6 GLN A 18 ? LEU A 24 ? GLN A 18 LEU A 24 B 7 LEU A 10 ? ILE A 15 ? LEU A 10 ILE A 15 B 8 GLY A 52 ? ILE A 66 ? GLY A 52 ILE A 66 C 1 LYS B 43 ? GLY B 49 ? LYS B 43 GLY B 49 C 2 GLY B 52 ? ILE B 66 ? GLY B 52 ILE B 66 C 3 HIS B 69 ? VAL B 77 ? HIS B 69 VAL B 77 C 4 VAL B 32 ? LEU B 33 ? VAL B 32 LEU B 33 C 5 ILE B 84 ? ILE B 85 ? ILE B 84 ILE B 85 C 6 GLN B 18 ? LEU B 24 ? GLN B 18 LEU B 24 C 7 LEU B 10 ? ILE B 15 ? LEU B 10 ILE B 15 C 8 GLY B 52 ? ILE B 66 ? GLY B 52 ILE B 66 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 3 ? N ILE A 3 O LEU B 97 ? O LEU B 97 A 2 3 O THR B 96 ? O THR B 96 N ASN A 98 ? N ASN A 98 A 3 4 N LEU A 97 ? N LEU A 97 O ILE B 3 ? O ILE B 3 B 1 2 N LYS A 43 ? N LYS A 43 O GLN A 58 ? O GLN A 58 B 2 3 N ILE A 64 ? N ILE A 64 O ALA A 71 ? O ALA A 71 B 3 4 O LEU A 76 ? O LEU A 76 N LEU A 33 ? N LEU A 33 B 4 5 N VAL A 32 ? N VAL A 32 O ILE A 84 ? O ILE A 84 B 5 6 O ILE A 85 ? O ILE A 85 N LEU A 23 ? N LEU A 23 B 6 7 O LYS A 20 ? O LYS A 20 N ILE A 13 ? N ILE A 13 B 7 8 N LYS A 14 ? N LYS A 14 O GLU A 65 ? O GLU A 65 C 1 2 N LYS B 43 ? N LYS B 43 O GLN B 58 ? O GLN B 58 C 2 3 N TYR B 59 ? N TYR B 59 O VAL B 75 ? O VAL B 75 C 3 4 O LEU B 76 ? O LEU B 76 N LEU B 33 ? N LEU B 33 C 4 5 N VAL B 32 ? N VAL B 32 O ILE B 84 ? O ILE B 84 C 5 6 O ILE B 85 ? O ILE B 85 N LEU B 23 ? N LEU B 23 C 6 7 O LYS B 20 ? O LYS B 20 N ILE B 13 ? N ILE B 13 C 7 8 N LYS B 14 ? N LYS B 14 O GLU B 65 ? O GLU B 65 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 3TL 200 ? 28 'BINDING SITE FOR RESIDUE 3TL A 200' AC2 Software A BME 202 ? 6 'BINDING SITE FOR RESIDUE BME A 202' AC3 Software B 1F1 201 ? 11 'BINDING SITE FOR RESIDUE 1F1 B 201' AC4 Software B BME 203 ? 6 'BINDING SITE FOR RESIDUE BME B 203' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 28 ARG A 8 ? ARG A 8 . ? 1_555 ? 2 AC1 28 ASP A 25 ? ASP A 25 . ? 1_555 ? 3 AC1 28 GLY A 27 ? GLY A 27 . ? 1_555 ? 4 AC1 28 ALA A 28 ? ALA A 28 . ? 1_555 ? 5 AC1 28 ASP A 29 ? ASP A 29 . ? 1_555 ? 6 AC1 28 PRO A 44 ? PRO A 44 . ? 4_455 ? 7 AC1 28 MET A 46 ? MET A 46 . ? 1_555 ? 8 AC1 28 ILE A 47 ? ILE A 47 . ? 1_555 ? 9 AC1 28 GLY A 48 ? GLY A 48 . ? 1_555 ? 10 AC1 28 GLY A 49 ? GLY A 49 . ? 1_555 ? 11 AC1 28 ILE A 50 ? ILE A 50 . ? 1_555 ? 12 AC1 28 PRO A 79 ? PRO A 79 . ? 4_555 ? 13 AC1 28 PRO A 81 ? PRO A 81 . ? 1_555 ? 14 AC1 28 VAL A 82 ? VAL A 82 . ? 1_555 ? 15 AC1 28 ILE A 84 ? ILE A 84 . ? 1_555 ? 16 AC1 28 HOH G . ? HOH A 263 . ? 1_555 ? 17 AC1 28 HOH G . ? HOH A 283 . ? 1_555 ? 18 AC1 28 ASP B 25 ? ASP B 25 . ? 1_555 ? 19 AC1 28 GLY B 27 ? GLY B 27 . ? 1_555 ? 20 AC1 28 ALA B 28 ? ALA B 28 . ? 1_555 ? 21 AC1 28 ASP B 29 ? ASP B 29 . ? 1_555 ? 22 AC1 28 ASP B 30 ? ASP B 30 . ? 1_555 ? 23 AC1 28 GLY B 48 ? GLY B 48 . ? 1_555 ? 24 AC1 28 GLY B 49 ? GLY B 49 . ? 1_555 ? 25 AC1 28 ILE B 50 ? ILE B 50 . ? 1_555 ? 26 AC1 28 PHE B 53 ? PHE B 53 . ? 1_555 ? 27 AC1 28 VAL B 82 ? VAL B 82 . ? 1_555 ? 28 AC1 28 ILE B 84 ? ILE B 84 . ? 1_555 ? 29 AC2 6 VAL A 11 ? VAL A 11 . ? 1_555 ? 30 AC2 6 THR A 12 ? THR A 12 . ? 1_555 ? 31 AC2 6 CYS A 67 ? CYS A 67 . ? 1_555 ? 32 AC2 6 HOH G . ? HOH A 287 . ? 1_555 ? 33 AC2 6 HOH G . ? HOH A 356 . ? 1_555 ? 34 AC2 6 LYS B 7 ? LYS B 7 . ? 1_455 ? 35 AC3 11 PRO B 44 ? PRO B 44 . ? 1_555 ? 36 AC3 11 LYS B 45 ? LYS B 45 . ? 1_555 ? 37 AC3 11 LYS B 55 ? LYS B 55 . ? 1_555 ? 38 AC3 11 VAL B 56 ? VAL B 56 . ? 1_555 ? 39 AC3 11 ARG B 57 ? ARG B 57 . ? 1_555 ? 40 AC3 11 THR B 91 ? THR B 91 . ? 3_454 ? 41 AC3 11 GLN B 92 ? GLN B 92 . ? 3_454 ? 42 AC3 11 GLY B 94 ? GLY B 94 . ? 3_454 ? 43 AC3 11 HOH H . ? HOH B 210 . ? 3_454 ? 44 AC3 11 HOH H . ? HOH B 310 . ? 1_555 ? 45 AC3 11 HOH H . ? HOH B 333 . ? 1_555 ? 46 AC4 6 LYS A 7 ? LYS A 7 . ? 1_655 ? 47 AC4 6 VAL B 11 ? VAL B 11 . ? 1_555 ? 48 AC4 6 THR B 12 ? THR B 12 . ? 1_555 ? 49 AC4 6 CYS B 67 ? CYS B 67 . ? 1_555 ? 50 AC4 6 HOH H . ? HOH B 222 . ? 1_555 ? 51 AC4 6 HOH H . ? HOH B 311 . ? 1_555 ? # _atom_sites.entry_id 3KFR _atom_sites.fract_transf_matrix[1][1] 0.034819 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015251 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010827 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 1 1 PRO PRO A . n A 1 2 GLN 2 2 2 GLN GLN A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 THR 4 4 4 THR THR A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 TRP 6 6 6 TRP TRP A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 ASP 25 25 25 ASP ASP A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 MET 36 36 36 MET MET A . n A 1 37 ASN 37 37 37 ASN ASN A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 TRP 42 42 42 TRP TRP A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 MET 46 46 46 MET MET A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 PHE 53 53 53 PHE PHE A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 ARG 57 57 57 ARG ARG A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 GLN 61 61 61 GLN GLN A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 CYS 67 67 67 CYS CYS A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 HIS 69 69 69 HIS HIS A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 PRO 79 79 79 PRO PRO A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 PRO 81 81 81 PRO PRO A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 ARG 87 87 87 ARG ARG A . n A 1 88 ASN 88 88 88 ASN ASN A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 GLN 92 92 92 GLN GLN A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 CYS 95 95 95 CYS CYS A . n A 1 96 THR 96 96 96 THR THR A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 ASN 98 98 98 ASN ASN A . n A 1 99 PHE 99 99 99 PHE PHE A . n B 1 1 PRO 1 1 1 PRO PRO B . n B 1 2 GLN 2 2 2 GLN GLN B . n B 1 3 ILE 3 3 3 ILE ILE B . n B 1 4 THR 4 4 4 THR THR B . n B 1 5 LEU 5 5 5 LEU LEU B . n B 1 6 TRP 6 6 6 TRP TRP B . n B 1 7 LYS 7 7 7 LYS LYS B . n B 1 8 ARG 8 8 8 ARG ARG B . n B 1 9 PRO 9 9 9 PRO PRO B . n B 1 10 LEU 10 10 10 LEU LEU B . n B 1 11 VAL 11 11 11 VAL VAL B . n B 1 12 THR 12 12 12 THR THR B . n B 1 13 ILE 13 13 13 ILE ILE B . n B 1 14 LYS 14 14 14 LYS LYS B . n B 1 15 ILE 15 15 15 ILE ILE B . n B 1 16 GLY 16 16 16 GLY GLY B . n B 1 17 GLY 17 17 17 GLY GLY B . n B 1 18 GLN 18 18 18 GLN GLN B . n B 1 19 LEU 19 19 19 LEU LEU B . n B 1 20 LYS 20 20 20 LYS LYS B . n B 1 21 GLU 21 21 21 GLU GLU B . n B 1 22 ALA 22 22 22 ALA ALA B . n B 1 23 LEU 23 23 23 LEU LEU B . n B 1 24 LEU 24 24 24 LEU LEU B . n B 1 25 ASP 25 25 25 ASP ASP B . n B 1 26 THR 26 26 26 THR THR B . n B 1 27 GLY 27 27 27 GLY GLY B . n B 1 28 ALA 28 28 28 ALA ALA B . n B 1 29 ASP 29 29 29 ASP ASP B . n B 1 30 ASP 30 30 30 ASP ASP B . n B 1 31 THR 31 31 31 THR THR B . n B 1 32 VAL 32 32 32 VAL VAL B . n B 1 33 LEU 33 33 33 LEU LEU B . n B 1 34 GLU 34 34 34 GLU GLU B . n B 1 35 GLU 35 35 35 GLU GLU B . n B 1 36 MET 36 36 36 MET MET B . n B 1 37 ASN 37 37 37 ASN ASN B . n B 1 38 LEU 38 38 38 LEU LEU B . n B 1 39 PRO 39 39 39 PRO PRO B . n B 1 40 GLY 40 40 40 GLY GLY B . n B 1 41 ARG 41 41 41 ARG ARG B . n B 1 42 TRP 42 42 42 TRP TRP B . n B 1 43 LYS 43 43 43 LYS LYS B . n B 1 44 PRO 44 44 44 PRO PRO B . n B 1 45 LYS 45 45 45 LYS LYS B . n B 1 46 MET 46 46 46 MET MET B . n B 1 47 ILE 47 47 47 ILE ILE B . n B 1 48 GLY 48 48 48 GLY GLY B . n B 1 49 GLY 49 49 49 GLY GLY B . n B 1 50 ILE 50 50 50 ILE ILE B . n B 1 51 GLY 51 51 51 GLY GLY B . n B 1 52 GLY 52 52 52 GLY GLY B . n B 1 53 PHE 53 53 53 PHE PHE B . n B 1 54 ILE 54 54 54 ILE ILE B . n B 1 55 LYS 55 55 55 LYS LYS B . n B 1 56 VAL 56 56 56 VAL VAL B . n B 1 57 ARG 57 57 57 ARG ARG B . n B 1 58 GLN 58 58 58 GLN GLN B . n B 1 59 TYR 59 59 59 TYR TYR B . n B 1 60 ASP 60 60 60 ASP ASP B . n B 1 61 GLN 61 61 61 GLN GLN B . n B 1 62 ILE 62 62 62 ILE ILE B . n B 1 63 LEU 63 63 63 LEU LEU B . n B 1 64 ILE 64 64 64 ILE ILE B . n B 1 65 GLU 65 65 65 GLU GLU B . n B 1 66 ILE 66 66 66 ILE ILE B . n B 1 67 CYS 67 67 67 CYS CYS B . n B 1 68 GLY 68 68 68 GLY GLY B . n B 1 69 HIS 69 69 69 HIS HIS B . n B 1 70 LYS 70 70 70 LYS LYS B . n B 1 71 ALA 71 71 71 ALA ALA B . n B 1 72 ILE 72 72 72 ILE ILE B . n B 1 73 GLY 73 73 73 GLY GLY B . n B 1 74 THR 74 74 74 THR THR B . n B 1 75 VAL 75 75 75 VAL VAL B . n B 1 76 LEU 76 76 76 LEU LEU B . n B 1 77 VAL 77 77 77 VAL VAL B . n B 1 78 GLY 78 78 78 GLY GLY B . n B 1 79 PRO 79 79 79 PRO PRO B . n B 1 80 THR 80 80 80 THR THR B . n B 1 81 PRO 81 81 81 PRO PRO B . n B 1 82 VAL 82 82 82 VAL VAL B . n B 1 83 ASN 83 83 83 ASN ASN B . n B 1 84 ILE 84 84 84 ILE ILE B . n B 1 85 ILE 85 85 85 ILE ILE B . n B 1 86 GLY 86 86 86 GLY GLY B . n B 1 87 ARG 87 87 87 ARG ARG B . n B 1 88 ASN 88 88 88 ASN ASN B . n B 1 89 LEU 89 89 89 LEU LEU B . n B 1 90 LEU 90 90 90 LEU LEU B . n B 1 91 THR 91 91 91 THR THR B . n B 1 92 GLN 92 92 92 GLN GLN B . n B 1 93 ILE 93 93 93 ILE ILE B . n B 1 94 GLY 94 94 94 GLY GLY B . n B 1 95 CYS 95 95 95 CYS CYS B . n B 1 96 THR 96 96 96 THR THR B . n B 1 97 LEU 97 97 97 LEU LEU B . n B 1 98 ASN 98 98 98 ASN ASN B . n B 1 99 PHE 99 99 99 PHE PHE B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 3TL 1 200 200 3TL 3TL A . D 3 BME 1 202 202 BME BME A . E 4 1F1 1 201 201 1F1 1F1 B . F 3 BME 1 203 203 BME BME B . G 5 HOH 1 204 204 HOH HOH A . G 5 HOH 2 206 206 HOH HOH A . G 5 HOH 3 211 211 HOH HOH A . G 5 HOH 4 213 213 HOH HOH A . G 5 HOH 5 214 214 HOH HOH A . G 5 HOH 6 217 217 HOH HOH A . G 5 HOH 7 219 219 HOH HOH A . G 5 HOH 8 220 220 HOH HOH A . G 5 HOH 9 224 224 HOH HOH A . G 5 HOH 10 225 225 HOH HOH A . G 5 HOH 11 226 226 HOH HOH A . G 5 HOH 12 229 229 HOH HOH A . G 5 HOH 13 231 231 HOH HOH A . G 5 HOH 14 232 232 HOH HOH A . G 5 HOH 15 233 233 HOH HOH A . G 5 HOH 16 235 235 HOH HOH A . G 5 HOH 17 236 236 HOH HOH A . G 5 HOH 18 237 237 HOH HOH A . G 5 HOH 19 240 240 HOH HOH A . G 5 HOH 20 241 241 HOH HOH A . G 5 HOH 21 244 244 HOH HOH A . G 5 HOH 22 246 246 HOH HOH A . G 5 HOH 23 247 247 HOH HOH A . G 5 HOH 24 250 250 HOH HOH A . G 5 HOH 25 253 253 HOH HOH A . G 5 HOH 26 255 255 HOH HOH A . G 5 HOH 27 258 258 HOH HOH A . G 5 HOH 28 259 259 HOH HOH A . G 5 HOH 29 260 260 HOH HOH A . G 5 HOH 30 263 263 HOH HOH A . G 5 HOH 31 266 266 HOH HOH A . G 5 HOH 32 272 272 HOH HOH A . G 5 HOH 33 276 276 HOH HOH A . G 5 HOH 34 277 277 HOH HOH A . G 5 HOH 35 281 281 HOH HOH A . G 5 HOH 36 283 283 HOH HOH A . G 5 HOH 37 286 286 HOH HOH A . G 5 HOH 38 287 287 HOH HOH A . G 5 HOH 39 288 288 HOH HOH A . G 5 HOH 40 289 289 HOH HOH A . G 5 HOH 41 290 290 HOH HOH A . G 5 HOH 42 292 292 HOH HOH A . G 5 HOH 43 295 295 HOH HOH A . G 5 HOH 44 298 298 HOH HOH A . G 5 HOH 45 299 299 HOH HOH A . G 5 HOH 46 300 300 HOH HOH A . G 5 HOH 47 302 302 HOH HOH A . G 5 HOH 48 314 314 HOH HOH A . G 5 HOH 49 316 316 HOH HOH A . G 5 HOH 50 317 317 HOH HOH A . G 5 HOH 51 320 320 HOH HOH A . G 5 HOH 52 329 329 HOH HOH A . G 5 HOH 53 330 330 HOH HOH A . G 5 HOH 54 331 331 HOH HOH A . G 5 HOH 55 332 332 HOH HOH A . G 5 HOH 56 334 334 HOH HOH A . G 5 HOH 57 337 337 HOH HOH A . G 5 HOH 58 339 339 HOH HOH A . G 5 HOH 59 340 340 HOH HOH A . G 5 HOH 60 342 342 HOH HOH A . G 5 HOH 61 345 345 HOH HOH A . G 5 HOH 62 349 349 HOH HOH A . G 5 HOH 63 350 350 HOH HOH A . G 5 HOH 64 354 354 HOH HOH A . G 5 HOH 65 355 355 HOH HOH A . G 5 HOH 66 356 356 HOH HOH A . G 5 HOH 67 358 358 HOH HOH A . G 5 HOH 68 361 361 HOH HOH A . G 5 HOH 69 362 362 HOH HOH A . G 5 HOH 70 364 364 HOH HOH A . G 5 HOH 71 365 365 HOH HOH A . G 5 HOH 72 366 366 HOH HOH A . G 5 HOH 73 367 367 HOH HOH A . G 5 HOH 74 368 368 HOH HOH A . G 5 HOH 75 369 369 HOH HOH A . G 5 HOH 76 371 371 HOH HOH A . G 5 HOH 77 373 373 HOH HOH A . G 5 HOH 78 375 375 HOH HOH A . G 5 HOH 79 380 380 HOH HOH A . G 5 HOH 80 381 381 HOH HOH A . G 5 HOH 81 382 382 HOH HOH A . G 5 HOH 82 383 383 HOH HOH A . G 5 HOH 83 384 384 HOH HOH A . G 5 HOH 84 385 385 HOH HOH A . H 5 HOH 1 205 205 HOH HOH B . H 5 HOH 2 207 207 HOH HOH B . H 5 HOH 3 208 208 HOH HOH B . H 5 HOH 4 209 209 HOH HOH B . H 5 HOH 5 210 210 HOH HOH B . H 5 HOH 6 212 212 HOH HOH B . H 5 HOH 7 215 215 HOH HOH B . H 5 HOH 8 216 216 HOH HOH B . H 5 HOH 9 218 218 HOH HOH B . H 5 HOH 10 221 221 HOH HOH B . H 5 HOH 11 222 222 HOH HOH B . H 5 HOH 12 223 223 HOH HOH B . H 5 HOH 13 227 227 HOH HOH B . H 5 HOH 14 234 234 HOH HOH B . H 5 HOH 15 238 238 HOH HOH B . H 5 HOH 16 239 239 HOH HOH B . H 5 HOH 17 243 243 HOH HOH B . H 5 HOH 18 245 245 HOH HOH B . H 5 HOH 19 248 248 HOH HOH B . H 5 HOH 20 249 249 HOH HOH B . H 5 HOH 21 252 252 HOH HOH B . H 5 HOH 22 254 254 HOH HOH B . H 5 HOH 23 256 256 HOH HOH B . H 5 HOH 24 257 257 HOH HOH B . H 5 HOH 25 261 261 HOH HOH B . H 5 HOH 26 262 262 HOH HOH B . H 5 HOH 27 264 264 HOH HOH B . H 5 HOH 28 265 265 HOH HOH B . H 5 HOH 29 269 269 HOH HOH B . H 5 HOH 30 270 270 HOH HOH B . H 5 HOH 31 273 273 HOH HOH B . H 5 HOH 32 274 274 HOH HOH B . H 5 HOH 33 275 275 HOH HOH B . H 5 HOH 34 278 278 HOH HOH B . H 5 HOH 35 280 280 HOH HOH B . H 5 HOH 36 282 282 HOH HOH B . H 5 HOH 37 284 284 HOH HOH B . H 5 HOH 38 285 285 HOH HOH B . H 5 HOH 39 291 291 HOH HOH B . H 5 HOH 40 293 293 HOH HOH B . H 5 HOH 41 294 294 HOH HOH B . H 5 HOH 42 296 296 HOH HOH B . H 5 HOH 43 297 297 HOH HOH B . H 5 HOH 44 301 301 HOH HOH B . H 5 HOH 45 303 303 HOH HOH B . H 5 HOH 46 306 306 HOH HOH B . H 5 HOH 47 307 307 HOH HOH B . H 5 HOH 48 308 308 HOH HOH B . H 5 HOH 49 309 309 HOH HOH B . H 5 HOH 50 310 310 HOH HOH B . H 5 HOH 51 311 311 HOH HOH B . H 5 HOH 52 312 312 HOH HOH B . H 5 HOH 53 313 313 HOH HOH B . H 5 HOH 54 319 319 HOH HOH B . H 5 HOH 55 322 322 HOH HOH B . H 5 HOH 56 323 323 HOH HOH B . H 5 HOH 57 324 324 HOH HOH B . H 5 HOH 58 325 325 HOH HOH B . H 5 HOH 59 326 326 HOH HOH B . H 5 HOH 60 327 327 HOH HOH B . H 5 HOH 61 328 328 HOH HOH B . H 5 HOH 62 333 333 HOH HOH B . H 5 HOH 63 335 335 HOH HOH B . H 5 HOH 64 336 336 HOH HOH B . H 5 HOH 65 338 338 HOH HOH B . H 5 HOH 66 341 341 HOH HOH B . H 5 HOH 67 343 343 HOH HOH B . H 5 HOH 68 344 344 HOH HOH B . H 5 HOH 69 346 346 HOH HOH B . H 5 HOH 70 347 347 HOH HOH B . H 5 HOH 71 348 348 HOH HOH B . H 5 HOH 72 351 351 HOH HOH B . H 5 HOH 73 352 352 HOH HOH B . H 5 HOH 74 353 353 HOH HOH B . H 5 HOH 75 357 357 HOH HOH B . H 5 HOH 76 359 359 HOH HOH B . H 5 HOH 77 360 360 HOH HOH B . H 5 HOH 78 363 363 HOH HOH B . H 5 HOH 79 370 370 HOH HOH B . H 5 HOH 80 372 372 HOH HOH B . H 5 HOH 81 374 374 HOH HOH B . H 5 HOH 82 376 376 HOH HOH B . H 5 HOH 83 377 377 HOH HOH B . H 5 HOH 84 378 378 HOH HOH B . H 5 HOH 85 379 379 HOH HOH B . # _pdbx_molecule_features.prd_id PRD_000434 _pdbx_molecule_features.name 'N-[(benzyloxy)carbonyl]-L-alanyl-N-[(1R)-1-benzyl-2-oxoethyl]-L-valinamide' _pdbx_molecule_features.type Peptide-like _pdbx_molecule_features.class Inhibitor _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000434 _pdbx_molecule.asym_id C # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3550 ? 1 MORE -22 ? 1 'SSA (A^2)' 10150 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-02-23 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2013-02-27 4 'Structure model' 1 3 2021-10-13 5 'Structure model' 1 4 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Atomic model' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Non-polymer description' 5 2 'Structure model' 'Structure summary' 6 2 'Structure model' 'Version format compliance' 7 3 'Structure model' Other 8 4 'Structure model' 'Database references' 9 4 'Structure model' 'Derived calculations' 10 5 'Structure model' 'Data collection' 11 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' struct_conn 3 4 'Structure model' struct_ref_seq_dif 4 4 'Structure model' struct_site 5 5 'Structure model' chem_comp_atom 6 5 'Structure model' chem_comp_bond 7 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 REFMAC 5.5.0090 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 2 PDB_EXTRACT 3.005 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 Blu-Ice . ? ? ? ? 'data collection' ? ? ? 4 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 5 SCALA . ? ? ? ? 'data scaling' ? ? ? 6 MOLREP . ? ? ? ? phasing ? ? ? # _pdbx_entry_details.entry_id 3KFR _pdbx_entry_details.nonpolymer_details 'THE INHIBITOR IS A C2 SYMMETRIC HIV PROTEASE' _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 39 ? ? -40.80 79.36 2 1 PRO B 79 ? ? -82.94 48.64 # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 C18 ? A 3TL 200 ? PLANAR . 2 1 C2 ? A 3TL 200 ? PLANAR . 3 1 C68 ? A 3TL 200 ? PLANAR . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 1F1 O1 O N N 1 1F1 C2 C N N 2 1F1 O3 O N N 3 1F1 C4 C Y N 4 1F1 C5 C Y N 5 1F1 C6 C Y N 6 1F1 C7 C Y N 7 1F1 C8 C Y N 8 1F1 C9 C Y N 9 1F1 N10 N Y N 10 1F1 C11 C Y N 11 1F1 C12 C Y N 12 1F1 HO3 H N N 13 1F1 H5 H N N 14 1F1 H6 H N N 15 1F1 H8 H N N 16 1F1 H9 H N N 17 1F1 H12 H N N 18 1F1 HN10 H N N 19 3TL C31 C N N 20 3TL O8 O N N 21 3TL O9 O N N 22 3TL CA C N N 23 3TL C C Y N 24 3TL C13 C Y N 25 3TL C14 C Y N 26 3TL C15 C Y N 27 3TL C16 C Y N 28 3TL C17 C Y N 29 3TL N4 N N N 30 3TL C18 C N S 31 3TL C19 C N N 32 3TL O4 O N N 33 3TL C20 C N N 34 3TL N2 N N N 35 3TL C10 C N S 36 3TL C11 C N N 37 3TL O2 O N N 38 3TL C12 C N N 39 3TL CG2 C N N 40 3TL CG1 C N N 41 3TL C2 C N R 42 3TL O1 O N N 43 3TL C1 C N S 44 3TL N1 N N N 45 3TL C3 C N N 46 3TL C4 C Y N 47 3TL C5 C Y N 48 3TL C9 C Y N 49 3TL C6 C Y N 50 3TL C8 C Y N 51 3TL C7 C Y N 52 3TL N51 N N N 53 3TL C51 C N S 54 3TL C52 C N R 55 3TL O51 O N N 56 3TL C53 C N N 57 3TL C54 C Y N 58 3TL C55 C Y N 59 3TL C59 C Y N 60 3TL C56 C Y N 61 3TL C58 C Y N 62 3TL C57 C Y N 63 3TL N52 N N N 64 3TL C60 C N S 65 3TL C61 C N N 66 3TL O52 O N N 67 3TL C62 C N N 68 3TL CG6 C N N 69 3TL CG5 C N N 70 3TL N54 N N N 71 3TL C68 C N S 72 3TL C69 C N N 73 3TL O54 O N N 74 3TL C70 C N N 75 3TL C81 C N N 76 3TL O58 O N N 77 3TL O59 O N N 78 3TL CA5 C N N 79 3TL C50 C Y N 80 3TL C63 C Y N 81 3TL C64 C Y N 82 3TL C65 C Y N 83 3TL C66 C Y N 84 3TL C67 C Y N 85 3TL HA1 H N N 86 3TL HA2 H N N 87 3TL H13 H N N 88 3TL H14 H N N 89 3TL H15 H N N 90 3TL H16 H N N 91 3TL H17 H N N 92 3TL HN4 H N N 93 3TL H18 H N N 94 3TL H201 H N N 95 3TL H202 H N N 96 3TL H203 H N N 97 3TL HN2 H N N 98 3TL H10 H N N 99 3TL H12 H N N 100 3TL HG21 H N N 101 3TL HG22 H N N 102 3TL HG23 H N N 103 3TL HG11 H N N 104 3TL HG12 H N N 105 3TL HG13 H N N 106 3TL H2 H N N 107 3TL HO1 H N N 108 3TL H1 H N N 109 3TL HN1 H N N 110 3TL H31 H N N 111 3TL H32 H N N 112 3TL H5 H N N 113 3TL H9 H N N 114 3TL H6 H N N 115 3TL H8 H N N 116 3TL H7 H N N 117 3TL HN51 H N N 118 3TL H51 H N N 119 3TL H52 H N N 120 3TL HO51 H N N 121 3TL H531 H N N 122 3TL H532 H N N 123 3TL H55 H N N 124 3TL H59 H N N 125 3TL H56 H N N 126 3TL H58 H N N 127 3TL H57 H N N 128 3TL HN52 H N N 129 3TL H60 H N N 130 3TL H62 H N N 131 3TL HG61 H N N 132 3TL HG62 H N N 133 3TL HG63 H N N 134 3TL HG51 H N N 135 3TL HG52 H N N 136 3TL HG53 H N N 137 3TL HN54 H N N 138 3TL H68 H N N 139 3TL H701 H N N 140 3TL H702 H N N 141 3TL H703 H N N 142 3TL HA51 H N N 143 3TL HA52 H N N 144 3TL H63 H N N 145 3TL H64 H N N 146 3TL H65 H N N 147 3TL H66 H N N 148 3TL H67 H N N 149 ALA N N N N 150 ALA CA C N S 151 ALA C C N N 152 ALA O O N N 153 ALA CB C N N 154 ALA OXT O N N 155 ALA H H N N 156 ALA H2 H N N 157 ALA HA H N N 158 ALA HB1 H N N 159 ALA HB2 H N N 160 ALA HB3 H N N 161 ALA HXT H N N 162 ARG N N N N 163 ARG CA C N S 164 ARG C C N N 165 ARG O O N N 166 ARG CB C N N 167 ARG CG C N N 168 ARG CD C N N 169 ARG NE N N N 170 ARG CZ C N N 171 ARG NH1 N N N 172 ARG NH2 N N N 173 ARG OXT O N N 174 ARG H H N N 175 ARG H2 H N N 176 ARG HA H N N 177 ARG HB2 H N N 178 ARG HB3 H N N 179 ARG HG2 H N N 180 ARG HG3 H N N 181 ARG HD2 H N N 182 ARG HD3 H N N 183 ARG HE H N N 184 ARG HH11 H N N 185 ARG HH12 H N N 186 ARG HH21 H N N 187 ARG HH22 H N N 188 ARG HXT H N N 189 ASN N N N N 190 ASN CA C N S 191 ASN C C N N 192 ASN O O N N 193 ASN CB C N N 194 ASN CG C N N 195 ASN OD1 O N N 196 ASN ND2 N N N 197 ASN OXT O N N 198 ASN H H N N 199 ASN H2 H N N 200 ASN HA H N N 201 ASN HB2 H N N 202 ASN HB3 H N N 203 ASN HD21 H N N 204 ASN HD22 H N N 205 ASN HXT H N N 206 ASP N N N N 207 ASP CA C N S 208 ASP C C N N 209 ASP O O N N 210 ASP CB C N N 211 ASP CG C N N 212 ASP OD1 O N N 213 ASP OD2 O N N 214 ASP OXT O N N 215 ASP H H N N 216 ASP H2 H N N 217 ASP HA H N N 218 ASP HB2 H N N 219 ASP HB3 H N N 220 ASP HD2 H N N 221 ASP HXT H N N 222 BME C1 C N N 223 BME C2 C N N 224 BME O1 O N N 225 BME S2 S N N 226 BME H11 H N N 227 BME H12 H N N 228 BME H21 H N N 229 BME H22 H N N 230 BME HO1 H N N 231 BME HS2 H N N 232 CYS N N N N 233 CYS CA C N R 234 CYS C C N N 235 CYS O O N N 236 CYS CB C N N 237 CYS SG S N N 238 CYS OXT O N N 239 CYS H H N N 240 CYS H2 H N N 241 CYS HA H N N 242 CYS HB2 H N N 243 CYS HB3 H N N 244 CYS HG H N N 245 CYS HXT H N N 246 GLN N N N N 247 GLN CA C N S 248 GLN C C N N 249 GLN O O N N 250 GLN CB C N N 251 GLN CG C N N 252 GLN CD C N N 253 GLN OE1 O N N 254 GLN NE2 N N N 255 GLN OXT O N N 256 GLN H H N N 257 GLN H2 H N N 258 GLN HA H N N 259 GLN HB2 H N N 260 GLN HB3 H N N 261 GLN HG2 H N N 262 GLN HG3 H N N 263 GLN HE21 H N N 264 GLN HE22 H N N 265 GLN HXT H N N 266 GLU N N N N 267 GLU CA C N S 268 GLU C C N N 269 GLU O O N N 270 GLU CB C N N 271 GLU CG C N N 272 GLU CD C N N 273 GLU OE1 O N N 274 GLU OE2 O N N 275 GLU OXT O N N 276 GLU H H N N 277 GLU H2 H N N 278 GLU HA H N N 279 GLU HB2 H N N 280 GLU HB3 H N N 281 GLU HG2 H N N 282 GLU HG3 H N N 283 GLU HE2 H N N 284 GLU HXT H N N 285 GLY N N N N 286 GLY CA C N N 287 GLY C C N N 288 GLY O O N N 289 GLY OXT O N N 290 GLY H H N N 291 GLY H2 H N N 292 GLY HA2 H N N 293 GLY HA3 H N N 294 GLY HXT H N N 295 HIS N N N N 296 HIS CA C N S 297 HIS C C N N 298 HIS O O N N 299 HIS CB C N N 300 HIS CG C Y N 301 HIS ND1 N Y N 302 HIS CD2 C Y N 303 HIS CE1 C Y N 304 HIS NE2 N Y N 305 HIS OXT O N N 306 HIS H H N N 307 HIS H2 H N N 308 HIS HA H N N 309 HIS HB2 H N N 310 HIS HB3 H N N 311 HIS HD1 H N N 312 HIS HD2 H N N 313 HIS HE1 H N N 314 HIS HE2 H N N 315 HIS HXT H N N 316 HOH O O N N 317 HOH H1 H N N 318 HOH H2 H N N 319 ILE N N N N 320 ILE CA C N S 321 ILE C C N N 322 ILE O O N N 323 ILE CB C N S 324 ILE CG1 C N N 325 ILE CG2 C N N 326 ILE CD1 C N N 327 ILE OXT O N N 328 ILE H H N N 329 ILE H2 H N N 330 ILE HA H N N 331 ILE HB H N N 332 ILE HG12 H N N 333 ILE HG13 H N N 334 ILE HG21 H N N 335 ILE HG22 H N N 336 ILE HG23 H N N 337 ILE HD11 H N N 338 ILE HD12 H N N 339 ILE HD13 H N N 340 ILE HXT H N N 341 LEU N N N N 342 LEU CA C N S 343 LEU C C N N 344 LEU O O N N 345 LEU CB C N N 346 LEU CG C N N 347 LEU CD1 C N N 348 LEU CD2 C N N 349 LEU OXT O N N 350 LEU H H N N 351 LEU H2 H N N 352 LEU HA H N N 353 LEU HB2 H N N 354 LEU HB3 H N N 355 LEU HG H N N 356 LEU HD11 H N N 357 LEU HD12 H N N 358 LEU HD13 H N N 359 LEU HD21 H N N 360 LEU HD22 H N N 361 LEU HD23 H N N 362 LEU HXT H N N 363 LYS N N N N 364 LYS CA C N S 365 LYS C C N N 366 LYS O O N N 367 LYS CB C N N 368 LYS CG C N N 369 LYS CD C N N 370 LYS CE C N N 371 LYS NZ N N N 372 LYS OXT O N N 373 LYS H H N N 374 LYS H2 H N N 375 LYS HA H N N 376 LYS HB2 H N N 377 LYS HB3 H N N 378 LYS HG2 H N N 379 LYS HG3 H N N 380 LYS HD2 H N N 381 LYS HD3 H N N 382 LYS HE2 H N N 383 LYS HE3 H N N 384 LYS HZ1 H N N 385 LYS HZ2 H N N 386 LYS HZ3 H N N 387 LYS HXT H N N 388 MET N N N N 389 MET CA C N S 390 MET C C N N 391 MET O O N N 392 MET CB C N N 393 MET CG C N N 394 MET SD S N N 395 MET CE C N N 396 MET OXT O N N 397 MET H H N N 398 MET H2 H N N 399 MET HA H N N 400 MET HB2 H N N 401 MET HB3 H N N 402 MET HG2 H N N 403 MET HG3 H N N 404 MET HE1 H N N 405 MET HE2 H N N 406 MET HE3 H N N 407 MET HXT H N N 408 PHE N N N N 409 PHE CA C N S 410 PHE C C N N 411 PHE O O N N 412 PHE CB C N N 413 PHE CG C Y N 414 PHE CD1 C Y N 415 PHE CD2 C Y N 416 PHE CE1 C Y N 417 PHE CE2 C Y N 418 PHE CZ C Y N 419 PHE OXT O N N 420 PHE H H N N 421 PHE H2 H N N 422 PHE HA H N N 423 PHE HB2 H N N 424 PHE HB3 H N N 425 PHE HD1 H N N 426 PHE HD2 H N N 427 PHE HE1 H N N 428 PHE HE2 H N N 429 PHE HZ H N N 430 PHE HXT H N N 431 PRO N N N N 432 PRO CA C N S 433 PRO C C N N 434 PRO O O N N 435 PRO CB C N N 436 PRO CG C N N 437 PRO CD C N N 438 PRO OXT O N N 439 PRO H H N N 440 PRO HA H N N 441 PRO HB2 H N N 442 PRO HB3 H N N 443 PRO HG2 H N N 444 PRO HG3 H N N 445 PRO HD2 H N N 446 PRO HD3 H N N 447 PRO HXT H N N 448 THR N N N N 449 THR CA C N S 450 THR C C N N 451 THR O O N N 452 THR CB C N R 453 THR OG1 O N N 454 THR CG2 C N N 455 THR OXT O N N 456 THR H H N N 457 THR H2 H N N 458 THR HA H N N 459 THR HB H N N 460 THR HG1 H N N 461 THR HG21 H N N 462 THR HG22 H N N 463 THR HG23 H N N 464 THR HXT H N N 465 TRP N N N N 466 TRP CA C N S 467 TRP C C N N 468 TRP O O N N 469 TRP CB C N N 470 TRP CG C Y N 471 TRP CD1 C Y N 472 TRP CD2 C Y N 473 TRP NE1 N Y N 474 TRP CE2 C Y N 475 TRP CE3 C Y N 476 TRP CZ2 C Y N 477 TRP CZ3 C Y N 478 TRP CH2 C Y N 479 TRP OXT O N N 480 TRP H H N N 481 TRP H2 H N N 482 TRP HA H N N 483 TRP HB2 H N N 484 TRP HB3 H N N 485 TRP HD1 H N N 486 TRP HE1 H N N 487 TRP HE3 H N N 488 TRP HZ2 H N N 489 TRP HZ3 H N N 490 TRP HH2 H N N 491 TRP HXT H N N 492 TYR N N N N 493 TYR CA C N S 494 TYR C C N N 495 TYR O O N N 496 TYR CB C N N 497 TYR CG C Y N 498 TYR CD1 C Y N 499 TYR CD2 C Y N 500 TYR CE1 C Y N 501 TYR CE2 C Y N 502 TYR CZ C Y N 503 TYR OH O N N 504 TYR OXT O N N 505 TYR H H N N 506 TYR H2 H N N 507 TYR HA H N N 508 TYR HB2 H N N 509 TYR HB3 H N N 510 TYR HD1 H N N 511 TYR HD2 H N N 512 TYR HE1 H N N 513 TYR HE2 H N N 514 TYR HH H N N 515 TYR HXT H N N 516 VAL N N N N 517 VAL CA C N S 518 VAL C C N N 519 VAL O O N N 520 VAL CB C N N 521 VAL CG1 C N N 522 VAL CG2 C N N 523 VAL OXT O N N 524 VAL H H N N 525 VAL H2 H N N 526 VAL HA H N N 527 VAL HB H N N 528 VAL HG11 H N N 529 VAL HG12 H N N 530 VAL HG13 H N N 531 VAL HG21 H N N 532 VAL HG22 H N N 533 VAL HG23 H N N 534 VAL HXT H N N 535 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1F1 O1 C2 doub N N 1 1F1 C2 O3 sing N N 2 1F1 C2 C4 sing N N 3 1F1 O3 HO3 sing N N 4 1F1 C4 C5 doub Y N 5 1F1 C4 C12 sing Y N 6 1F1 C5 C6 sing Y N 7 1F1 C5 H5 sing N N 8 1F1 C6 C7 doub Y N 9 1F1 C6 H6 sing N N 10 1F1 C11 C7 sing Y N 11 1F1 C7 C8 sing Y N 12 1F1 C8 C9 doub Y N 13 1F1 C8 H8 sing N N 14 1F1 N10 C9 sing Y N 15 1F1 C9 H9 sing N N 16 1F1 C11 N10 sing Y N 17 1F1 C12 C11 doub Y N 18 1F1 C12 H12 sing N N 19 1F1 N10 HN10 sing N N 20 3TL C31 O8 doub N N 21 3TL C31 O9 sing N N 22 3TL C31 N4 sing N N 23 3TL O9 CA sing N N 24 3TL CA C sing N N 25 3TL CA HA1 sing N N 26 3TL CA HA2 sing N N 27 3TL C C13 doub Y N 28 3TL C C17 sing Y N 29 3TL C13 C14 sing Y N 30 3TL C13 H13 sing N N 31 3TL C14 C15 doub Y N 32 3TL C14 H14 sing N N 33 3TL C15 C16 sing Y N 34 3TL C15 H15 sing N N 35 3TL C16 C17 doub Y N 36 3TL C16 H16 sing N N 37 3TL C17 H17 sing N N 38 3TL N4 C18 sing N N 39 3TL N4 HN4 sing N N 40 3TL C18 C19 sing N N 41 3TL C18 C20 sing N N 42 3TL C18 H18 sing N N 43 3TL C19 O4 doub N N 44 3TL C19 N2 sing N N 45 3TL C20 H201 sing N N 46 3TL C20 H202 sing N N 47 3TL C20 H203 sing N N 48 3TL N2 C10 sing N N 49 3TL N2 HN2 sing N N 50 3TL C10 C11 sing N N 51 3TL C10 C12 sing N N 52 3TL C10 H10 sing N N 53 3TL C11 O2 doub N N 54 3TL C11 N1 sing N N 55 3TL C12 CG2 sing N N 56 3TL C12 CG1 sing N N 57 3TL C12 H12 sing N N 58 3TL CG2 HG21 sing N N 59 3TL CG2 HG22 sing N N 60 3TL CG2 HG23 sing N N 61 3TL CG1 HG11 sing N N 62 3TL CG1 HG12 sing N N 63 3TL CG1 HG13 sing N N 64 3TL C2 O1 sing N N 65 3TL C2 C1 sing N N 66 3TL C2 H2 sing N N 67 3TL C2 C52 sing N N 68 3TL O1 HO1 sing N N 69 3TL C1 N1 sing N N 70 3TL C1 C3 sing N N 71 3TL C1 H1 sing N N 72 3TL N1 HN1 sing N N 73 3TL C3 C4 sing N N 74 3TL C3 H31 sing N N 75 3TL C3 H32 sing N N 76 3TL C4 C5 doub Y N 77 3TL C4 C9 sing Y N 78 3TL C5 C6 sing Y N 79 3TL C5 H5 sing N N 80 3TL C9 C8 doub Y N 81 3TL C9 H9 sing N N 82 3TL C6 C7 doub Y N 83 3TL C6 H6 sing N N 84 3TL C8 C7 sing Y N 85 3TL C8 H8 sing N N 86 3TL C7 H7 sing N N 87 3TL N51 C51 sing N N 88 3TL N51 HN51 sing N N 89 3TL N51 C61 sing N N 90 3TL C51 C52 sing N N 91 3TL C51 C53 sing N N 92 3TL C51 H51 sing N N 93 3TL C52 O51 sing N N 94 3TL C52 H52 sing N N 95 3TL O51 HO51 sing N N 96 3TL C53 C54 sing N N 97 3TL C53 H531 sing N N 98 3TL C53 H532 sing N N 99 3TL C54 C55 doub Y N 100 3TL C54 C59 sing Y N 101 3TL C55 C56 sing Y N 102 3TL C55 H55 sing N N 103 3TL C59 C58 doub Y N 104 3TL C59 H59 sing N N 105 3TL C56 C57 doub Y N 106 3TL C56 H56 sing N N 107 3TL C58 C57 sing Y N 108 3TL C58 H58 sing N N 109 3TL C57 H57 sing N N 110 3TL N52 C60 sing N N 111 3TL N52 HN52 sing N N 112 3TL N52 C69 sing N N 113 3TL C60 C61 sing N N 114 3TL C60 C62 sing N N 115 3TL C60 H60 sing N N 116 3TL C61 O52 doub N N 117 3TL C62 CG6 sing N N 118 3TL C62 CG5 sing N N 119 3TL C62 H62 sing N N 120 3TL CG6 HG61 sing N N 121 3TL CG6 HG62 sing N N 122 3TL CG6 HG63 sing N N 123 3TL CG5 HG51 sing N N 124 3TL CG5 HG52 sing N N 125 3TL CG5 HG53 sing N N 126 3TL N54 C68 sing N N 127 3TL N54 HN54 sing N N 128 3TL N54 C81 sing N N 129 3TL C68 C69 sing N N 130 3TL C68 C70 sing N N 131 3TL C68 H68 sing N N 132 3TL C69 O54 doub N N 133 3TL C70 H701 sing N N 134 3TL C70 H702 sing N N 135 3TL C70 H703 sing N N 136 3TL C81 O58 doub N N 137 3TL C81 O59 sing N N 138 3TL O59 CA5 sing N N 139 3TL CA5 C50 sing N N 140 3TL CA5 HA51 sing N N 141 3TL CA5 HA52 sing N N 142 3TL C50 C63 doub Y N 143 3TL C50 C67 sing Y N 144 3TL C63 C64 sing Y N 145 3TL C63 H63 sing N N 146 3TL C64 C65 doub Y N 147 3TL C64 H64 sing N N 148 3TL C65 C66 sing Y N 149 3TL C65 H65 sing N N 150 3TL C66 C67 doub Y N 151 3TL C66 H66 sing N N 152 3TL C67 H67 sing N N 153 ALA N CA sing N N 154 ALA N H sing N N 155 ALA N H2 sing N N 156 ALA CA C sing N N 157 ALA CA CB sing N N 158 ALA CA HA sing N N 159 ALA C O doub N N 160 ALA C OXT sing N N 161 ALA CB HB1 sing N N 162 ALA CB HB2 sing N N 163 ALA CB HB3 sing N N 164 ALA OXT HXT sing N N 165 ARG N CA sing N N 166 ARG N H sing N N 167 ARG N H2 sing N N 168 ARG CA C sing N N 169 ARG CA CB sing N N 170 ARG CA HA sing N N 171 ARG C O doub N N 172 ARG C OXT sing N N 173 ARG CB CG sing N N 174 ARG CB HB2 sing N N 175 ARG CB HB3 sing N N 176 ARG CG CD sing N N 177 ARG CG HG2 sing N N 178 ARG CG HG3 sing N N 179 ARG CD NE sing N N 180 ARG CD HD2 sing N N 181 ARG CD HD3 sing N N 182 ARG NE CZ sing N N 183 ARG NE HE sing N N 184 ARG CZ NH1 sing N N 185 ARG CZ NH2 doub N N 186 ARG NH1 HH11 sing N N 187 ARG NH1 HH12 sing N N 188 ARG NH2 HH21 sing N N 189 ARG NH2 HH22 sing N N 190 ARG OXT HXT sing N N 191 ASN N CA sing N N 192 ASN N H sing N N 193 ASN N H2 sing N N 194 ASN CA C sing N N 195 ASN CA CB sing N N 196 ASN CA HA sing N N 197 ASN C O doub N N 198 ASN C OXT sing N N 199 ASN CB CG sing N N 200 ASN CB HB2 sing N N 201 ASN CB HB3 sing N N 202 ASN CG OD1 doub N N 203 ASN CG ND2 sing N N 204 ASN ND2 HD21 sing N N 205 ASN ND2 HD22 sing N N 206 ASN OXT HXT sing N N 207 ASP N CA sing N N 208 ASP N H sing N N 209 ASP N H2 sing N N 210 ASP CA C sing N N 211 ASP CA CB sing N N 212 ASP CA HA sing N N 213 ASP C O doub N N 214 ASP C OXT sing N N 215 ASP CB CG sing N N 216 ASP CB HB2 sing N N 217 ASP CB HB3 sing N N 218 ASP CG OD1 doub N N 219 ASP CG OD2 sing N N 220 ASP OD2 HD2 sing N N 221 ASP OXT HXT sing N N 222 BME C1 C2 sing N N 223 BME C1 O1 sing N N 224 BME C1 H11 sing N N 225 BME C1 H12 sing N N 226 BME C2 S2 sing N N 227 BME C2 H21 sing N N 228 BME C2 H22 sing N N 229 BME O1 HO1 sing N N 230 BME S2 HS2 sing N N 231 CYS N CA sing N N 232 CYS N H sing N N 233 CYS N H2 sing N N 234 CYS CA C sing N N 235 CYS CA CB sing N N 236 CYS CA HA sing N N 237 CYS C O doub N N 238 CYS C OXT sing N N 239 CYS CB SG sing N N 240 CYS CB HB2 sing N N 241 CYS CB HB3 sing N N 242 CYS SG HG sing N N 243 CYS OXT HXT sing N N 244 GLN N CA sing N N 245 GLN N H sing N N 246 GLN N H2 sing N N 247 GLN CA C sing N N 248 GLN CA CB sing N N 249 GLN CA HA sing N N 250 GLN C O doub N N 251 GLN C OXT sing N N 252 GLN CB CG sing N N 253 GLN CB HB2 sing N N 254 GLN CB HB3 sing N N 255 GLN CG CD sing N N 256 GLN CG HG2 sing N N 257 GLN CG HG3 sing N N 258 GLN CD OE1 doub N N 259 GLN CD NE2 sing N N 260 GLN NE2 HE21 sing N N 261 GLN NE2 HE22 sing N N 262 GLN OXT HXT sing N N 263 GLU N CA sing N N 264 GLU N H sing N N 265 GLU N H2 sing N N 266 GLU CA C sing N N 267 GLU CA CB sing N N 268 GLU CA HA sing N N 269 GLU C O doub N N 270 GLU C OXT sing N N 271 GLU CB CG sing N N 272 GLU CB HB2 sing N N 273 GLU CB HB3 sing N N 274 GLU CG CD sing N N 275 GLU CG HG2 sing N N 276 GLU CG HG3 sing N N 277 GLU CD OE1 doub N N 278 GLU CD OE2 sing N N 279 GLU OE2 HE2 sing N N 280 GLU OXT HXT sing N N 281 GLY N CA sing N N 282 GLY N H sing N N 283 GLY N H2 sing N N 284 GLY CA C sing N N 285 GLY CA HA2 sing N N 286 GLY CA HA3 sing N N 287 GLY C O doub N N 288 GLY C OXT sing N N 289 GLY OXT HXT sing N N 290 HIS N CA sing N N 291 HIS N H sing N N 292 HIS N H2 sing N N 293 HIS CA C sing N N 294 HIS CA CB sing N N 295 HIS CA HA sing N N 296 HIS C O doub N N 297 HIS C OXT sing N N 298 HIS CB CG sing N N 299 HIS CB HB2 sing N N 300 HIS CB HB3 sing N N 301 HIS CG ND1 sing Y N 302 HIS CG CD2 doub Y N 303 HIS ND1 CE1 doub Y N 304 HIS ND1 HD1 sing N N 305 HIS CD2 NE2 sing Y N 306 HIS CD2 HD2 sing N N 307 HIS CE1 NE2 sing Y N 308 HIS CE1 HE1 sing N N 309 HIS NE2 HE2 sing N N 310 HIS OXT HXT sing N N 311 HOH O H1 sing N N 312 HOH O H2 sing N N 313 ILE N CA sing N N 314 ILE N H sing N N 315 ILE N H2 sing N N 316 ILE CA C sing N N 317 ILE CA CB sing N N 318 ILE CA HA sing N N 319 ILE C O doub N N 320 ILE C OXT sing N N 321 ILE CB CG1 sing N N 322 ILE CB CG2 sing N N 323 ILE CB HB sing N N 324 ILE CG1 CD1 sing N N 325 ILE CG1 HG12 sing N N 326 ILE CG1 HG13 sing N N 327 ILE CG2 HG21 sing N N 328 ILE CG2 HG22 sing N N 329 ILE CG2 HG23 sing N N 330 ILE CD1 HD11 sing N N 331 ILE CD1 HD12 sing N N 332 ILE CD1 HD13 sing N N 333 ILE OXT HXT sing N N 334 LEU N CA sing N N 335 LEU N H sing N N 336 LEU N H2 sing N N 337 LEU CA C sing N N 338 LEU CA CB sing N N 339 LEU CA HA sing N N 340 LEU C O doub N N 341 LEU C OXT sing N N 342 LEU CB CG sing N N 343 LEU CB HB2 sing N N 344 LEU CB HB3 sing N N 345 LEU CG CD1 sing N N 346 LEU CG CD2 sing N N 347 LEU CG HG sing N N 348 LEU CD1 HD11 sing N N 349 LEU CD1 HD12 sing N N 350 LEU CD1 HD13 sing N N 351 LEU CD2 HD21 sing N N 352 LEU CD2 HD22 sing N N 353 LEU CD2 HD23 sing N N 354 LEU OXT HXT sing N N 355 LYS N CA sing N N 356 LYS N H sing N N 357 LYS N H2 sing N N 358 LYS CA C sing N N 359 LYS CA CB sing N N 360 LYS CA HA sing N N 361 LYS C O doub N N 362 LYS C OXT sing N N 363 LYS CB CG sing N N 364 LYS CB HB2 sing N N 365 LYS CB HB3 sing N N 366 LYS CG CD sing N N 367 LYS CG HG2 sing N N 368 LYS CG HG3 sing N N 369 LYS CD CE sing N N 370 LYS CD HD2 sing N N 371 LYS CD HD3 sing N N 372 LYS CE NZ sing N N 373 LYS CE HE2 sing N N 374 LYS CE HE3 sing N N 375 LYS NZ HZ1 sing N N 376 LYS NZ HZ2 sing N N 377 LYS NZ HZ3 sing N N 378 LYS OXT HXT sing N N 379 MET N CA sing N N 380 MET N H sing N N 381 MET N H2 sing N N 382 MET CA C sing N N 383 MET CA CB sing N N 384 MET CA HA sing N N 385 MET C O doub N N 386 MET C OXT sing N N 387 MET CB CG sing N N 388 MET CB HB2 sing N N 389 MET CB HB3 sing N N 390 MET CG SD sing N N 391 MET CG HG2 sing N N 392 MET CG HG3 sing N N 393 MET SD CE sing N N 394 MET CE HE1 sing N N 395 MET CE HE2 sing N N 396 MET CE HE3 sing N N 397 MET OXT HXT sing N N 398 PHE N CA sing N N 399 PHE N H sing N N 400 PHE N H2 sing N N 401 PHE CA C sing N N 402 PHE CA CB sing N N 403 PHE CA HA sing N N 404 PHE C O doub N N 405 PHE C OXT sing N N 406 PHE CB CG sing N N 407 PHE CB HB2 sing N N 408 PHE CB HB3 sing N N 409 PHE CG CD1 doub Y N 410 PHE CG CD2 sing Y N 411 PHE CD1 CE1 sing Y N 412 PHE CD1 HD1 sing N N 413 PHE CD2 CE2 doub Y N 414 PHE CD2 HD2 sing N N 415 PHE CE1 CZ doub Y N 416 PHE CE1 HE1 sing N N 417 PHE CE2 CZ sing Y N 418 PHE CE2 HE2 sing N N 419 PHE CZ HZ sing N N 420 PHE OXT HXT sing N N 421 PRO N CA sing N N 422 PRO N CD sing N N 423 PRO N H sing N N 424 PRO CA C sing N N 425 PRO CA CB sing N N 426 PRO CA HA sing N N 427 PRO C O doub N N 428 PRO C OXT sing N N 429 PRO CB CG sing N N 430 PRO CB HB2 sing N N 431 PRO CB HB3 sing N N 432 PRO CG CD sing N N 433 PRO CG HG2 sing N N 434 PRO CG HG3 sing N N 435 PRO CD HD2 sing N N 436 PRO CD HD3 sing N N 437 PRO OXT HXT sing N N 438 THR N CA sing N N 439 THR N H sing N N 440 THR N H2 sing N N 441 THR CA C sing N N 442 THR CA CB sing N N 443 THR CA HA sing N N 444 THR C O doub N N 445 THR C OXT sing N N 446 THR CB OG1 sing N N 447 THR CB CG2 sing N N 448 THR CB HB sing N N 449 THR OG1 HG1 sing N N 450 THR CG2 HG21 sing N N 451 THR CG2 HG22 sing N N 452 THR CG2 HG23 sing N N 453 THR OXT HXT sing N N 454 TRP N CA sing N N 455 TRP N H sing N N 456 TRP N H2 sing N N 457 TRP CA C sing N N 458 TRP CA CB sing N N 459 TRP CA HA sing N N 460 TRP C O doub N N 461 TRP C OXT sing N N 462 TRP CB CG sing N N 463 TRP CB HB2 sing N N 464 TRP CB HB3 sing N N 465 TRP CG CD1 doub Y N 466 TRP CG CD2 sing Y N 467 TRP CD1 NE1 sing Y N 468 TRP CD1 HD1 sing N N 469 TRP CD2 CE2 doub Y N 470 TRP CD2 CE3 sing Y N 471 TRP NE1 CE2 sing Y N 472 TRP NE1 HE1 sing N N 473 TRP CE2 CZ2 sing Y N 474 TRP CE3 CZ3 doub Y N 475 TRP CE3 HE3 sing N N 476 TRP CZ2 CH2 doub Y N 477 TRP CZ2 HZ2 sing N N 478 TRP CZ3 CH2 sing Y N 479 TRP CZ3 HZ3 sing N N 480 TRP CH2 HH2 sing N N 481 TRP OXT HXT sing N N 482 TYR N CA sing N N 483 TYR N H sing N N 484 TYR N H2 sing N N 485 TYR CA C sing N N 486 TYR CA CB sing N N 487 TYR CA HA sing N N 488 TYR C O doub N N 489 TYR C OXT sing N N 490 TYR CB CG sing N N 491 TYR CB HB2 sing N N 492 TYR CB HB3 sing N N 493 TYR CG CD1 doub Y N 494 TYR CG CD2 sing Y N 495 TYR CD1 CE1 sing Y N 496 TYR CD1 HD1 sing N N 497 TYR CD2 CE2 doub Y N 498 TYR CD2 HD2 sing N N 499 TYR CE1 CZ doub Y N 500 TYR CE1 HE1 sing N N 501 TYR CE2 CZ sing Y N 502 TYR CE2 HE2 sing N N 503 TYR CZ OH sing N N 504 TYR OH HH sing N N 505 TYR OXT HXT sing N N 506 VAL N CA sing N N 507 VAL N H sing N N 508 VAL N H2 sing N N 509 VAL CA C sing N N 510 VAL CA CB sing N N 511 VAL CA HA sing N N 512 VAL C O doub N N 513 VAL C OXT sing N N 514 VAL CB CG1 sing N N 515 VAL CB CG2 sing N N 516 VAL CB HB sing N N 517 VAL CG1 HG11 sing N N 518 VAL CG1 HG12 sing N N 519 VAL CG1 HG13 sing N N 520 VAL CG2 HG21 sing N N 521 VAL CG2 HG22 sing N N 522 VAL CG2 HG23 sing N N 523 VAL OXT HXT sing N N 524 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;benzyl [(1S,4S,7S,8R,9R,10S,13S,16S)-7,10-dibenzyl-8,9-dihydroxy-1,16-dimethyl-4,13-bis(1-methylethyl)-2,5,12,15,18-pentaoxo-20-phenyl-19-oxa-3,6,11,14,17-pentaazaicos-1-yl]carbamate ; 3TL 3 BETA-MERCAPTOETHANOL BME 4 '1H-indole-6-carboxylic acid' 1F1 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2AZ8 _pdbx_initial_refinement_model.details 'HIV PR dimer generated from monomer with TL-3 bound in 2AZ8' #