HEADER OXIDOREDUCTASE 28-OCT-09 3KG1 TITLE CRYSTAL STRUCTURE OF SNOAB, A COFACTOR-INDEPENDENT OXYGENASE FROM TITLE 2 STREPTOMYCES NOGALATER, MUTANT N63A COMPND MOL_ID: 1; COMPND 2 MOLECULE: SNOAB; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: OXYGENASE; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES NOGALATER; SOURCE 3 ORGANISM_TAXID: 38314; SOURCE 4 GENE: SNOAB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: TOP10; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: MODIFIED FROM PBAD/HISB KEYWDS POLYKETIDE, ANTHRACYCLINE, OXYGENASE, COFACTOR-INDEPENDENT, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.KOSKINIEMI,T.GROCHOLSKI,Y.LINDQVIST,P.MANTSALA,J.NIEMI,G.SCHNEIDER REVDAT 5 21-FEB-24 3KG1 1 REMARK REVDAT 4 13-OCT-21 3KG1 1 REMARK SEQADV REVDAT 3 13-JUL-11 3KG1 1 VERSN REVDAT 2 16-FEB-10 3KG1 1 JRNL REVDAT 1 26-JAN-10 3KG1 0 JRNL AUTH T.GROCHOLSKI,H.KOSKINIEMI,Y.LINDQVIST,P.MANTSALA,J.NIEMI, JRNL AUTH 2 G.SCHNEIDER JRNL TITL CRYSTAL STRUCTURE OF THE COFACTOR-INDEPENDENT MONOOXYGENASE JRNL TITL 2 SNOAB FROM STREPTOMYCES NOGALATER: IMPLICATIONS FOR THE JRNL TITL 3 REACTION MECHANISM JRNL REF BIOCHEMISTRY V. 49 934 2010 JRNL REFN ISSN 0006-2960 JRNL PMID 20052967 JRNL DOI 10.1021/BI901985B REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.KOSKINIEMI,T.GROCHOLSKI,G.SCHNEIDER,J.NIEMI REMARK 1 TITL EXPRESSION, PURIFICATION AND CRYSTALLIZATION OF THE REMARK 1 TITL 2 COFACTOR-INDEPENDENT MONOOXYGENASE SNOAB FROM THE REMARK 1 TITL 3 NOGALAMYCIN BIOSYNTHETIC PATHWAY REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 65 256 2009 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 19255477 REMARK 1 DOI 10.1107/S1744309109001389 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0070 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 11271 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 568 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 749 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE SET COUNT : 35 REMARK 3 BIN FREE R VALUE : 0.3200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2335 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 34 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 52.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.65000 REMARK 3 B22 (A**2) : -2.91000 REMARK 3 B33 (A**2) : 4.57000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.710 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.312 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.261 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 25.621 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2385 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1610 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3250 ; 1.307 ; 1.907 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3827 ; 0.901 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 297 ; 6.293 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;28.216 ;21.694 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 328 ;17.164 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;22.157 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 355 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2751 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 592 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1478 ; 0.466 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 587 ; 0.105 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2360 ; 0.904 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 907 ; 1.434 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 888 ; 2.473 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 13 A 55 4 REMARK 3 1 B 13 B 55 4 REMARK 3 1 C 13 C 55 4 REMARK 3 2 A 60 A 102 4 REMARK 3 2 B 60 B 102 4 REMARK 3 2 C 60 C 102 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1100 ; 0.610 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 B (A): 1100 ; 0.550 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 C (A): 1100 ; 0.640 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1100 ; 0.470 ; 2.000 REMARK 3 MEDIUM THERMAL 1 B (A**2): 1100 ; 0.450 ; 2.000 REMARK 3 MEDIUM THERMAL 1 C (A**2): 1100 ; 0.490 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 107 REMARK 3 ORIGIN FOR THE GROUP (A): 8.4260 -12.6960 10.3810 REMARK 3 T TENSOR REMARK 3 T11: 0.1066 T22: 0.0290 REMARK 3 T33: 0.0517 T12: 0.0232 REMARK 3 T13: -0.0494 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 3.6515 L22: 1.1589 REMARK 3 L33: 2.6021 L12: 0.2608 REMARK 3 L13: -1.2037 L23: -0.0603 REMARK 3 S TENSOR REMARK 3 S11: 0.0129 S12: -0.2472 S13: 0.0458 REMARK 3 S21: 0.1867 S22: 0.0062 S23: -0.2343 REMARK 3 S31: -0.0258 S32: 0.1352 S33: -0.0192 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 11 B 108 REMARK 3 ORIGIN FOR THE GROUP (A): 20.5720 5.6660 30.7680 REMARK 3 T TENSOR REMARK 3 T11: 0.1287 T22: 0.1034 REMARK 3 T33: 0.0307 T12: 0.0333 REMARK 3 T13: -0.0426 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 4.5611 L22: 2.7187 REMARK 3 L33: 2.9311 L12: 0.0032 REMARK 3 L13: -1.5641 L23: -1.1189 REMARK 3 S TENSOR REMARK 3 S11: 0.0606 S12: 0.4628 S13: 0.1576 REMARK 3 S21: -0.2269 S22: -0.1279 S23: 0.1488 REMARK 3 S31: -0.2345 S32: -0.0420 S33: 0.0673 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 10 C 106 REMARK 3 ORIGIN FOR THE GROUP (A): 10.2600 16.2340 3.3170 REMARK 3 T TENSOR REMARK 3 T11: 0.0389 T22: 0.0369 REMARK 3 T33: 0.0095 T12: -0.0161 REMARK 3 T13: -0.0072 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 2.3113 L22: 3.4099 REMARK 3 L33: 1.3331 L12: -0.7371 REMARK 3 L13: -0.4872 L23: 0.5463 REMARK 3 S TENSOR REMARK 3 S11: -0.0916 S12: -0.0159 S13: 0.0738 REMARK 3 S21: 0.0859 S22: 0.1226 S23: 0.0847 REMARK 3 S31: -0.0656 S32: 0.0924 S33: -0.0310 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3KG1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1000055946. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : DIAMOND (111), GE(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11301 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10300 REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.57100 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG MME 2K, KBR, PENTAERYTHRITOL REMARK 280 ETHOXYLATE , PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 28.91550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.80150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.91550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.80150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 57.83100 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -9 REMARK 465 ALA A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 ARG A 0 REMARK 465 SER A 1 REMARK 465 PRO A 2 REMARK 465 THR A 3 REMARK 465 ARG A 4 REMARK 465 VAL A 5 REMARK 465 ASN A 6 REMARK 465 ASP A 7 REMARK 465 GLY A 8 REMARK 465 VAL A 9 REMARK 465 ASP A 10 REMARK 465 GLY A 109 REMARK 465 GLY A 110 REMARK 465 ASP A 111 REMARK 465 THR A 112 REMARK 465 THR A 113 REMARK 465 GLY A 114 REMARK 465 SER A 115 REMARK 465 GLY A 116 REMARK 465 HIS A 117 REMARK 465 ARG A 118 REMARK 465 MET B -9 REMARK 465 ALA B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 ARG B 0 REMARK 465 SER B 1 REMARK 465 PRO B 2 REMARK 465 THR B 3 REMARK 465 ARG B 4 REMARK 465 VAL B 5 REMARK 465 ASN B 6 REMARK 465 ASP B 7 REMARK 465 GLY B 8 REMARK 465 VAL B 9 REMARK 465 ASP B 10 REMARK 465 GLY B 109 REMARK 465 GLY B 110 REMARK 465 ASP B 111 REMARK 465 THR B 112 REMARK 465 THR B 113 REMARK 465 GLY B 114 REMARK 465 SER B 115 REMARK 465 GLY B 116 REMARK 465 HIS B 117 REMARK 465 ARG B 118 REMARK 465 MET C -9 REMARK 465 ALA C -8 REMARK 465 HIS C -7 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 HIS C -1 REMARK 465 ARG C 0 REMARK 465 SER C 1 REMARK 465 PRO C 2 REMARK 465 THR C 3 REMARK 465 ARG C 4 REMARK 465 VAL C 5 REMARK 465 ASN C 6 REMARK 465 ASP C 7 REMARK 465 GLY C 8 REMARK 465 VAL C 9 REMARK 465 PRO C 107 REMARK 465 GLU C 108 REMARK 465 GLY C 109 REMARK 465 GLY C 110 REMARK 465 ASP C 111 REMARK 465 THR C 112 REMARK 465 THR C 113 REMARK 465 GLY C 114 REMARK 465 SER C 115 REMARK 465 GLY C 116 REMARK 465 HIS C 117 REMARK 465 ARG C 118 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 19 CG CD NE CZ NH1 NH2 REMARK 480 HIS A 49 CG ND1 CD2 CE1 NE2 REMARK 480 ASP A 56 CG OD1 OD2 REMARK 480 ASP A 58 CB CG OD1 OD2 REMARK 480 LYS B 57 CD CE NZ REMARK 480 ARG B 74 CG CD NE CZ NH1 NH2 REMARK 480 ARG B 75 CB CG CD NE CZ NH1 NH2 REMARK 480 ARG C 74 NE CZ NH1 NH2 REMARK 480 LEU C 83 CG CD1 CD2 REMARK 480 LEU C 106 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 56 CB - CG - OD1 ANGL. DEV. = 9.7 DEGREES REMARK 500 ASP A 56 CB - CG - OD2 ANGL. DEV. = -9.4 DEGREES REMARK 500 ARG C 53 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL C 47 -65.07 -96.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 119 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 119 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KG0 RELATED DB: PDB REMARK 900 RELATED ID: 3KNG RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THAT G25A IS IN FACT THE NATIVE SEQUENCE. THEY REMARK 999 CONFIRMED THEIR NATIVE SEQUENCE BY DNA-SEQUENCING THREE TIMES. THIS REMARK 999 HAS BEEN NOTED IN THE SECONDARY REFERENCE, KOSKINIEMI ET AL. 2009 DBREF 3KG1 A -9 118 UNP O54259 O54259_STRNO 1 118 DBREF 3KG1 B -9 118 UNP O54259 O54259_STRNO 1 118 DBREF 3KG1 C -9 118 UNP O54259 O54259_STRNO 1 118 SEQADV 3KG1 ALA A -8 UNP O54259 EXPRESSION TAG SEQADV 3KG1 HIS A -7 UNP O54259 EXPRESSION TAG SEQADV 3KG1 HIS A -6 UNP O54259 EXPRESSION TAG SEQADV 3KG1 HIS A -5 UNP O54259 EXPRESSION TAG SEQADV 3KG1 HIS A -4 UNP O54259 EXPRESSION TAG SEQADV 3KG1 HIS A -3 UNP O54259 EXPRESSION TAG SEQADV 3KG1 HIS A -2 UNP O54259 EXPRESSION TAG SEQADV 3KG1 HIS A -1 UNP O54259 EXPRESSION TAG SEQADV 3KG1 ARG A 0 UNP O54259 EXPRESSION TAG SEQADV 3KG1 SER A 1 UNP O54259 EXPRESSION TAG SEQADV 3KG1 ALA A 25 UNP O54259 GLY 25 SEE REMARK 999 SEQADV 3KG1 ALA A 63 UNP O54259 ASN 63 ENGINEERED MUTATION SEQADV 3KG1 ALA B -8 UNP O54259 EXPRESSION TAG SEQADV 3KG1 HIS B -7 UNP O54259 EXPRESSION TAG SEQADV 3KG1 HIS B -6 UNP O54259 EXPRESSION TAG SEQADV 3KG1 HIS B -5 UNP O54259 EXPRESSION TAG SEQADV 3KG1 HIS B -4 UNP O54259 EXPRESSION TAG SEQADV 3KG1 HIS B -3 UNP O54259 EXPRESSION TAG SEQADV 3KG1 HIS B -2 UNP O54259 EXPRESSION TAG SEQADV 3KG1 HIS B -1 UNP O54259 EXPRESSION TAG SEQADV 3KG1 ARG B 0 UNP O54259 EXPRESSION TAG SEQADV 3KG1 SER B 1 UNP O54259 EXPRESSION TAG SEQADV 3KG1 ALA B 25 UNP O54259 GLY 25 SEE REMARK 999 SEQADV 3KG1 ALA B 63 UNP O54259 ASN 63 ENGINEERED MUTATION SEQADV 3KG1 ALA C -8 UNP O54259 EXPRESSION TAG SEQADV 3KG1 HIS C -7 UNP O54259 EXPRESSION TAG SEQADV 3KG1 HIS C -6 UNP O54259 EXPRESSION TAG SEQADV 3KG1 HIS C -5 UNP O54259 EXPRESSION TAG SEQADV 3KG1 HIS C -4 UNP O54259 EXPRESSION TAG SEQADV 3KG1 HIS C -3 UNP O54259 EXPRESSION TAG SEQADV 3KG1 HIS C -2 UNP O54259 EXPRESSION TAG SEQADV 3KG1 HIS C -1 UNP O54259 EXPRESSION TAG SEQADV 3KG1 ARG C 0 UNP O54259 EXPRESSION TAG SEQADV 3KG1 SER C 1 UNP O54259 EXPRESSION TAG SEQADV 3KG1 ALA C 25 UNP O54259 GLY 25 SEE REMARK 999 SEQADV 3KG1 ALA C 63 UNP O54259 ASN 63 ENGINEERED MUTATION SEQRES 1 A 128 MET ALA HIS HIS HIS HIS HIS HIS HIS ARG SER PRO THR SEQRES 2 A 128 ARG VAL ASN ASP GLY VAL ASP ALA ASP GLU VAL THR PHE SEQRES 3 A 128 VAL ASN ARG PHE THR VAL HIS GLY ALA PRO ALA GLU PHE SEQRES 4 A 128 GLU SER VAL PHE ALA ARG THR ALA ALA PHE PHE ALA ARG SEQRES 5 A 128 GLN PRO GLY PHE VAL ARG HIS THR LEU LEU ARG GLU ARG SEQRES 6 A 128 ASP LYS ASP ASN SER TYR VAL ALA ILE ALA VAL TRP THR SEQRES 7 A 128 ASP HIS ASP ALA PHE ARG ARG ALA LEU ALA GLN PRO GLY SEQRES 8 A 128 PHE LEU PRO HIS ALA THR ALA LEU ARG ALA LEU SER THR SEQRES 9 A 128 SER GLU HIS GLY LEU PHE THR ALA ARG GLN THR LEU PRO SEQRES 10 A 128 GLU GLY GLY ASP THR THR GLY SER GLY HIS ARG SEQRES 1 B 128 MET ALA HIS HIS HIS HIS HIS HIS HIS ARG SER PRO THR SEQRES 2 B 128 ARG VAL ASN ASP GLY VAL ASP ALA ASP GLU VAL THR PHE SEQRES 3 B 128 VAL ASN ARG PHE THR VAL HIS GLY ALA PRO ALA GLU PHE SEQRES 4 B 128 GLU SER VAL PHE ALA ARG THR ALA ALA PHE PHE ALA ARG SEQRES 5 B 128 GLN PRO GLY PHE VAL ARG HIS THR LEU LEU ARG GLU ARG SEQRES 6 B 128 ASP LYS ASP ASN SER TYR VAL ALA ILE ALA VAL TRP THR SEQRES 7 B 128 ASP HIS ASP ALA PHE ARG ARG ALA LEU ALA GLN PRO GLY SEQRES 8 B 128 PHE LEU PRO HIS ALA THR ALA LEU ARG ALA LEU SER THR SEQRES 9 B 128 SER GLU HIS GLY LEU PHE THR ALA ARG GLN THR LEU PRO SEQRES 10 B 128 GLU GLY GLY ASP THR THR GLY SER GLY HIS ARG SEQRES 1 C 128 MET ALA HIS HIS HIS HIS HIS HIS HIS ARG SER PRO THR SEQRES 2 C 128 ARG VAL ASN ASP GLY VAL ASP ALA ASP GLU VAL THR PHE SEQRES 3 C 128 VAL ASN ARG PHE THR VAL HIS GLY ALA PRO ALA GLU PHE SEQRES 4 C 128 GLU SER VAL PHE ALA ARG THR ALA ALA PHE PHE ALA ARG SEQRES 5 C 128 GLN PRO GLY PHE VAL ARG HIS THR LEU LEU ARG GLU ARG SEQRES 6 C 128 ASP LYS ASP ASN SER TYR VAL ALA ILE ALA VAL TRP THR SEQRES 7 C 128 ASP HIS ASP ALA PHE ARG ARG ALA LEU ALA GLN PRO GLY SEQRES 8 C 128 PHE LEU PRO HIS ALA THR ALA LEU ARG ALA LEU SER THR SEQRES 9 C 128 SER GLU HIS GLY LEU PHE THR ALA ARG GLN THR LEU PRO SEQRES 10 C 128 GLU GLY GLY ASP THR THR GLY SER GLY HIS ARG HET CL A 119 1 HET CL C 119 1 HETNAM CL CHLORIDE ION FORMUL 4 CL 2(CL 1-) FORMUL 6 HOH *34(H2 O) HELIX 1 1 ALA A 25 ARG A 42 1 18 HELIX 2 2 ASP A 69 ALA A 78 1 10 HELIX 3 3 GLN A 79 GLY A 81 5 3 HELIX 4 4 PHE A 82 LEU A 92 1 11 HELIX 5 5 ALA B 25 ARG B 42 1 18 HELIX 6 6 ASP B 69 GLN B 79 1 11 HELIX 7 7 PHE B 82 LEU B 92 1 11 HELIX 8 8 ALA C 25 ARG C 42 1 18 HELIX 9 9 ASP C 69 ALA C 78 1 10 HELIX 10 10 GLN C 79 GLY C 81 5 3 HELIX 11 11 PHE C 82 LEU C 92 1 11 SHEET 1 A 4 PHE A 46 ARG A 53 0 SHEET 2 A 4 SER A 60 TRP A 67 -1 O VAL A 62 N LEU A 52 SHEET 3 A 4 VAL A 14 VAL A 22 -1 N PHE A 16 O ALA A 65 SHEET 4 A 4 SER A 93 THR A 101 -1 O GLU A 96 N ARG A 19 SHEET 1 B 4 PHE B 46 ARG B 53 0 SHEET 2 B 4 SER B 60 TRP B 67 -1 O VAL B 62 N LEU B 52 SHEET 3 B 4 VAL B 14 VAL B 22 -1 N ASN B 18 O ALA B 63 SHEET 4 B 4 SER B 93 THR B 101 -1 O PHE B 100 N THR B 15 SHEET 1 C 4 PHE C 46 ARG C 53 0 SHEET 2 C 4 SER C 60 TRP C 67 -1 O VAL C 62 N LEU C 52 SHEET 3 C 4 VAL C 14 VAL C 22 -1 N PHE C 20 O TYR C 61 SHEET 4 C 4 SER C 93 PHE C 100 -1 O GLU C 96 N ARG C 19 CISPEP 1 LEU A 106 PRO A 107 0 -1.60 CISPEP 2 LEU B 106 PRO B 107 0 -8.84 SITE 1 AC1 1 ARG C 42 SITE 1 AC2 2 THR C 21 GLU C 96 CRYST1 57.831 111.603 48.087 90.00 90.00 90.00 P 21 21 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017292 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008960 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020796 0.00000