HEADER UNKNOWN FUNCTION 30-OCT-09 3KH5 TITLE CRYSTAL STRUCTURE OF PROTEIN MJ1225 FROM METHANOCALDOCOCCUS TITLE 2 JANNASCHII, A PUTATIVE ARCHAEAL HOMOLOG OF G-AMPK. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN MJ1225; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.1.34; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_COMMON: METHANOCOCCUS JANNASCHII; SOURCE 4 ORGANISM_TAXID: 2190; SOURCE 5 GENE: MJ1225; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET101-D KEYWDS MJ1225, AMPK, AMP, ADP, ATP, CBS DOMAIN, ARCHAEA, METHANOCALDOCOCCUS KEYWDS 2 JANNASCHII., UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR I.GOMEZ GARCIA,I.OYENARTE,L.A.MARTINEZ-CRUZ REVDAT 3 03-APR-24 3KH5 1 REMARK REVDAT 2 21-FEB-24 3KH5 1 REMARK REVDAT 1 21-APR-10 3KH5 0 JRNL AUTH I.GOMEZ-GARCIA,I.OYENARTE,L.A.MARTINEZ-CRUZ JRNL TITL THE CRYSTAL STRUCTURE OF PROTEIN MJ1225 FROM JRNL TITL 2 METHANOCALDOCOCCUS JANNASCHII SHOWS STRONG CONSERVATION OF JRNL TITL 3 KEY STRUCTURAL FEATURES SEEN IN THE EUKARYAL GAMMA-AMPK. JRNL REF J.MOL.BIOL. V. 65 813 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20382158 JRNL DOI 10.1016/J.JMB.2010.03.045 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH I.GOMEZ GARCIA,D.KORTAZAR,I.OYENARTE,J.M.MATO, REMARK 1 AUTH 2 M.L.MARTINEZ-CHANTAR,L.A.MARTINEZ-CRUZ REMARK 1 TITL PURIFICATION, CRYSTALLIZATION AND PRELIMINARY REMARK 1 TITL 2 CRYSTALLOGRAPHIC ANALYSIS OF PROTEIN MJ1225 FROM REMARK 1 TITL 3 METHANOCALDOCOCCUS JANNASCHII, A PUTATIVE ARCHAEAL HOMOLOGUE REMARK 1 TITL 4 OF GAMMA-AMPK. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 65 813 2009 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 19652347 REMARK 1 DOI 10.1107/S1744309109026475 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 18219 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 983 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1297 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2850 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2203 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 132 REMARK 3 SOLVENT ATOMS : 143 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.80000 REMARK 3 B22 (A**2) : -0.80000 REMARK 3 B33 (A**2) : 1.19000 REMARK 3 B12 (A**2) : -0.40000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.267 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.232 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2375 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3233 ; 1.768 ; 2.051 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 279 ; 5.970 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 102 ;38.071 ;24.608 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 442 ;17.784 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;19.435 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 391 ; 0.149 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1682 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1387 ; 0.751 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2272 ; 1.359 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 988 ; 1.023 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 961 ; 1.971 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3KH5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1000055986. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19237 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 24.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08600 REMARK 200 FOR THE DATA SET : 45.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PROTEIN MJ0100 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4 M AMMONIUM SULFATE, 2.8 % PEG 400, REMARK 280 100 MM HEPES, 114 MM FOS-CHOLINE 8 OR 11 MM FOS-CHOLINE 10, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 54.27400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 31.33511 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 47.87567 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 54.27400 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 31.33511 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 47.87567 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 54.27400 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 31.33511 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 47.87567 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 54.27400 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 31.33511 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 47.87567 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 54.27400 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 31.33511 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 47.87567 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 54.27400 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 31.33511 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 47.87567 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 62.67022 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 95.75133 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 62.67022 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 95.75133 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 62.67022 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 95.75133 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 62.67022 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 95.75133 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 62.67022 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 95.75133 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 62.67022 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 95.75133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 386 O HOH A 387 2.03 REMARK 500 N GLY A 164 O3 SO4 A 285 2.13 REMARK 500 O1A ADP A 284 O HOH A 420 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 350 O HOH A 422 12555 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 44 N - CA - C ANGL. DEV. = -15.3 DEGREES REMARK 500 ARG A 181 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 181 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 76 3.24 87.02 REMARK 500 SER A 129 -156.29 -157.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 43 GLY A 44 34.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 281 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 282 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 283 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 284 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 1605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 285 DBREF 3KH5 A 1 280 UNP Q58622 Y1225_METJA 1 280 SEQRES 1 A 280 MET PHE VAL ARG VAL MET LYS ILE ALA GLN ASN LYS LYS SEQRES 2 A 280 ILE VAL THR VAL TYR PRO THR THR THR ILE ARG LYS ALA SEQRES 3 A 280 LEU MET THR MET ASN GLU ASN LYS TYR ARG ARG LEU PRO SEQRES 4 A 280 VAL VAL ASN ALA GLY ASN ASN LYS VAL VAL GLY ILE ILE SEQRES 5 A 280 THR SER MET ASP ILE VAL ASP PHE MET GLY GLY GLY SER SEQRES 6 A 280 LYS TYR ASN LEU ILE ARG GLU LYS HIS GLU ARG ASN PHE SEQRES 7 A 280 LEU ALA ALA ILE ASN GLU PRO VAL ARG GLU ILE MET GLU SEQRES 8 A 280 GLU ASN VAL ILE THR LEU LYS GLU ASN ALA ASP ILE ASP SEQRES 9 A 280 GLU ALA ILE GLU THR PHE LEU THR LYS ASN VAL GLY GLY SEQRES 10 A 280 ALA PRO ILE VAL ASN ASP GLU ASN GLN LEU ILE SER LEU SEQRES 11 A 280 ILE THR GLU ARG ASP VAL ILE ARG ALA LEU LEU ASP LYS SEQRES 12 A 280 ILE ASP GLU ASN GLU VAL ILE ASP ASP TYR ILE THR ARG SEQRES 13 A 280 ASP VAL ILE VAL ALA THR PRO GLY GLU ARG LEU LYS ASP SEQRES 14 A 280 VAL ALA ARG THR MET VAL ARG ASN GLY PHE ARG ARG LEU SEQRES 15 A 280 PRO VAL VAL SER GLU GLY ARG LEU VAL GLY ILE ILE THR SEQRES 16 A 280 SER THR ASP PHE ILE LYS LEU LEU GLY SER ASP TRP ALA SEQRES 17 A 280 PHE ASN HIS MET GLN THR GLY ASN VAL ARG GLU ILE THR SEQRES 18 A 280 ASN VAL ARG MET GLU GLU ILE MET LYS ARG ASP VAL ILE SEQRES 19 A 280 THR ALA LYS GLU GLY ASP LYS LEU LYS LYS ILE ALA GLU SEQRES 20 A 280 ILE MET VAL THR ASN ASP ILE GLY ALA LEU PRO VAL VAL SEQRES 21 A 280 ASP GLU ASN LEU ARG ILE LYS GLY ILE ILE THR GLU LYS SEQRES 22 A 280 ASP VAL LEU LYS TYR PHE ALA HET ADP A 281 27 HET AMP A 282 23 HET ADP A 283 27 HET ADP A 284 27 HET AMP A1605 23 HET SO4 A 285 5 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM SO4 SULFATE ION FORMUL 2 ADP 3(C10 H15 N5 O10 P2) FORMUL 3 AMP 2(C10 H14 N5 O7 P) FORMUL 7 SO4 O4 S 2- FORMUL 8 HOH *143(H2 O) HELIX 1 1 ARG A 4 ILE A 8 5 5 HELIX 2 2 THR A 22 LYS A 34 1 13 HELIX 3 3 SER A 54 MET A 61 1 8 HELIX 4 4 GLY A 64 LYS A 66 5 3 HELIX 5 5 TYR A 67 GLU A 72 1 6 HELIX 6 6 ASN A 77 ILE A 82 1 6 HELIX 7 7 ASN A 83 GLU A 84 5 2 HELIX 8 8 PRO A 85 ILE A 89 5 5 HELIX 9 9 ASP A 102 LYS A 113 1 12 HELIX 10 10 GLU A 133 LEU A 141 1 9 HELIX 11 11 ASP A 142 ILE A 144 5 3 HELIX 12 12 ILE A 150 ILE A 154 5 5 HELIX 13 13 ARG A 166 GLY A 178 1 13 HELIX 14 14 SER A 196 GLY A 204 1 9 HELIX 15 15 SER A 205 THR A 214 1 10 HELIX 16 16 VAL A 217 VAL A 223 1 7 HELIX 17 17 ARG A 224 MET A 229 1 6 HELIX 18 18 LYS A 241 ASN A 252 1 12 HELIX 19 19 GLU A 272 LEU A 276 1 5 HELIX 20 20 LYS A 277 ALA A 280 5 4 SHEET 1 A 2 ARG A 37 VAL A 41 0 SHEET 2 A 2 VAL A 48 THR A 53 -1 O ILE A 52 N LEU A 38 SHEET 1 B 3 LEU A 97 LYS A 98 0 SHEET 2 B 3 GLY A 117 VAL A 121 1 O VAL A 121 N LEU A 97 SHEET 3 B 3 LEU A 127 THR A 132 -1 O ILE A 128 N ILE A 120 SHEET 1 C 2 ARG A 181 SER A 186 0 SHEET 2 C 2 ARG A 189 THR A 195 -1 O VAL A 191 N VAL A 184 SHEET 1 D 2 ALA A 256 VAL A 260 0 SHEET 2 D 2 ILE A 266 THR A 271 -1 O LYS A 267 N VAL A 259 CISPEP 1 GLY A 215 ASN A 216 0 -1.63 SITE 1 AC1 11 GLN A 10 VAL A 15 TYR A 35 ARG A 36 SITE 2 AC1 11 ARG A 37 THR A 132 ARG A 134 ASP A 135 SITE 3 AC1 11 ARG A 180 HOH A 343 HOH A 344 SITE 1 AC2 10 ARG A 181 THR A 195 THR A 197 ASP A 198 SITE 2 AC2 10 VAL A 233 ILE A 234 ILE A 254 ALA A 256 SITE 3 AC2 10 HOH A 349 HOH A 400 SITE 1 AC3 19 ARG A 37 THR A 53 MET A 55 ASP A 56 SITE 2 AC3 19 GLU A 91 VAL A 94 ILE A 95 VAL A 115 SITE 3 AC3 19 GLY A 116 GLY A 117 ARG A 176 ARG A 180 SITE 4 AC3 19 HOH A 339 HOH A 341 HOH A 355 HOH A 356 SITE 5 AC3 19 HOH A 380 HOH A 398 HOH A 421 SITE 1 AC4 17 THR A 155 ASP A 157 VAL A 158 ILE A 159 SITE 2 AC4 17 PHE A 179 ARG A 180 ARG A 181 LEU A 182 SITE 3 AC4 17 THR A 271 LYS A 273 ASP A 274 LYS A 277 SITE 4 AC4 17 HOH A 338 HOH A 339 HOH A 342 HOH A 352 SITE 5 AC4 17 HOH A 420 SITE 1 AC5 7 SER A 65 ASN A 68 LEU A 69 GLU A 72 SITE 2 AC5 7 LYS A 73 GLU A 88 GLU A 92 SITE 1 AC6 4 THR A 162 PRO A 163 GLY A 164 ARG A 224 CRYST1 108.548 108.548 143.627 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009213 0.005319 0.000000 0.00000 SCALE2 0.000000 0.010638 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006962 0.00000