HEADER TRANSFERASE/DNA 30-OCT-09 3KHL TITLE DPO4 POST-EXTENSION TERNARY COMPLEX WITH MISINSERTED A OPPOSITE THE 2- TITLE 2 AMINOFLUORENE-GUANINE [AF]G LESION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE IV; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: POL IV; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-D(*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*AP*(DDG))-3'; COMPND 9 CHAIN: D, H; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: DNA PRIMER STRAND (DIDEOXY-TERMINATED AT THE 3'-END); COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: 5'-D(*CP*C*TP*AP*AP*CP*GP*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP* COMPND 14 CP*C)-3'; COMPND 15 CHAIN: E, J; COMPND 16 ENGINEERED: YES; COMPND 17 OTHER_DETAILS: DNA [AF]G-MODIFIED TEMPLATE STRAND SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS P2; SOURCE 3 ORGANISM_TAXID: 273057; SOURCE 4 STRAIN: P2 / DSM 1617 / JCM 11322; SOURCE 5 GENE: DBH, DPO4, SSO2448; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-RIL(STRATAGENE); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: DNA PRIMER STRAND (DIDEOXY-TERMINATED AT THE 3'-END); SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 OTHER_DETAILS: DNA [AF]G-MODIFIED TEMPLATE STRAND KEYWDS LESION BYPASS, DNA POLYMERASE, Y-FAMILY POLYMERASE, 2-AMINOFLUORENE, KEYWDS 2 SEMI-TARGETED MUTAGENESIS, DNA DAMAGE, DNA REPAIR, DNA REPLICATION, KEYWDS 3 DNA-BINDING, DNA-DIRECTED DNA POLYMERASE, MAGNESIUM, METAL-BINDING, KEYWDS 4 MUTATOR PROTEIN, NUCLEOTIDYLTRANSFERASE, TRANSFERASE, TRANSFERASE- KEYWDS 5 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR O.RECHKOBLIT,L.MALININA,D.J.PATEL REVDAT 5 06-SEP-23 3KHL 1 REMARK REVDAT 4 13-OCT-21 3KHL 1 REMARK DBREF SEQADV LINK REVDAT 3 13-JUL-11 3KHL 1 VERSN REVDAT 2 16-MAR-10 3KHL 1 JRNL REVDAT 1 16-FEB-10 3KHL 0 JRNL AUTH O.RECHKOBLIT,A.KOLBANOVSKIY,L.MALININA,N.E.GEACINTOV, JRNL AUTH 2 S.BROYDE,D.J.PATEL JRNL TITL MECHANISM OF ERROR-FREE AND SEMITARGETED MUTAGENIC BYPASS OF JRNL TITL 2 AN AROMATIC AMINE LESION BY Y-FAMILY POLYMERASE DPO4. JRNL REF NAT.STRUCT.MOL.BIOL. V. 17 379 2010 JRNL REFN ISSN 1545-9993 JRNL PMID 20154704 JRNL DOI 10.1038/NSMB.1771 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 52487 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2797 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3565 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 193 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5480 REMARK 3 NUCLEIC ACID ATOMS : 1227 REMARK 3 HETEROGEN ATOMS : 92 REMARK 3 SOLVENT ATOMS : 316 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.58000 REMARK 3 B22 (A**2) : -1.07000 REMARK 3 B33 (A**2) : 0.68000 REMARK 3 B12 (A**2) : 1.67000 REMARK 3 B13 (A**2) : -0.75000 REMARK 3 B23 (A**2) : 0.63000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.242 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.209 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.153 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.142 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7075 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9770 ; 1.461 ; 2.224 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 686 ; 5.380 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 244 ;32.151 ;23.566 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1128 ;17.210 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 49 ;17.545 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1100 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4753 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3432 ; 0.836 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5555 ; 1.306 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3643 ; 1.789 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4215 ; 2.832 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 902 E 918 REMARK 3 RESIDUE RANGE : D 803 D 814 REMARK 3 RESIDUE RANGE : A 414 A 414 REMARK 3 ORIGIN FOR THE GROUP (A): 4.3222 -11.1453 -8.6285 REMARK 3 T TENSOR REMARK 3 T11: 0.3900 T22: 0.2659 REMARK 3 T33: 0.3549 T12: -0.0226 REMARK 3 T13: 0.0126 T23: -0.0632 REMARK 3 L TENSOR REMARK 3 L11: 1.8029 L22: 3.3680 REMARK 3 L33: 1.5385 L12: -1.9450 REMARK 3 L13: -0.8280 L23: 0.2664 REMARK 3 S TENSOR REMARK 3 S11: 0.2443 S12: 0.4709 S13: -0.3278 REMARK 3 S21: -0.5883 S22: -0.5008 S23: 0.0239 REMARK 3 S31: 0.2852 S32: -0.2152 S33: 0.2565 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : J 1901 J 1918 REMARK 3 RESIDUE RANGE : H 1803 H 1814 REMARK 3 RESIDUE RANGE : B 1414 B 1414 REMARK 3 ORIGIN FOR THE GROUP (A): -22.3148 33.0302 -46.9242 REMARK 3 T TENSOR REMARK 3 T11: 0.3186 T22: 0.4049 REMARK 3 T33: 0.2610 T12: 0.0550 REMARK 3 T13: -0.0020 T23: -0.0361 REMARK 3 L TENSOR REMARK 3 L11: 1.3541 L22: 2.9323 REMARK 3 L33: 2.4073 L12: -1.0432 REMARK 3 L13: -0.4518 L23: 0.4866 REMARK 3 S TENSOR REMARK 3 S11: -0.2422 S12: -0.2934 S13: 0.2083 REMARK 3 S21: 0.7128 S22: 0.1906 S23: 0.1218 REMARK 3 S31: -0.1346 S32: -0.2478 S33: 0.0515 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 341 REMARK 3 ORIGIN FOR THE GROUP (A): -1.1439 2.4610 1.5486 REMARK 3 T TENSOR REMARK 3 T11: 0.0917 T22: 0.0917 REMARK 3 T33: 0.0821 T12: -0.0638 REMARK 3 T13: 0.0004 T23: -0.0220 REMARK 3 L TENSOR REMARK 3 L11: 0.3906 L22: 2.2865 REMARK 3 L33: 0.2025 L12: -0.3557 REMARK 3 L13: -0.1642 L23: 0.1370 REMARK 3 S TENSOR REMARK 3 S11: 0.0996 S12: 0.0393 S13: -0.0900 REMARK 3 S21: -0.0081 S22: -0.0844 S23: 0.0723 REMARK 3 S31: -0.0192 S32: -0.0489 S33: -0.0152 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1001 B 1341 REMARK 3 ORIGIN FOR THE GROUP (A): -12.3610 21.9109 -56.5379 REMARK 3 T TENSOR REMARK 3 T11: 0.0194 T22: 0.1382 REMARK 3 T33: 0.0490 T12: 0.0112 REMARK 3 T13: -0.0149 T23: 0.0106 REMARK 3 L TENSOR REMARK 3 L11: 1.0002 L22: 1.1360 REMARK 3 L33: 1.9361 L12: -0.3697 REMARK 3 L13: -0.5300 L23: -0.2067 REMARK 3 S TENSOR REMARK 3 S11: -0.0540 S12: -0.0815 S13: 0.0263 REMARK 3 S21: 0.1234 S22: 0.0073 S23: -0.0606 REMARK 3 S31: 0.0542 S32: 0.1229 S33: 0.0467 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3KHL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1000056002. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55384 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.40200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2ASD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES PH 7.0, 100 MM CALCIUM REMARK 280 ACETATE, 10% PEG 4000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, H, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DC E 900 REMARK 465 DC E 901 REMARK 465 DC E 919 REMARK 465 DC J 1900 REMARK 465 DC J 1919 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DT E 902 P OP1 OP2 REMARK 470 DA H1814 N9 C8 N7 C5 C6 N6 N1 REMARK 470 DA H1814 C2 N3 C4 REMARK 470 DC J1901 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC J1907 O3' DC J1907 C3' -0.039 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT D 803 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT D 803 C3' - O3' - P ANGL. DEV. = 7.3 DEGREES REMARK 500 DT D 804 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG D 810 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DA D 814 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DT E 902 C3' - O3' - P ANGL. DEV. = 9.2 DEGREES REMARK 500 DA E 903 O3' - P - O5' ANGL. DEV. = -21.0 DEGREES REMARK 500 DA E 903 O3' - P - OP2 ANGL. DEV. = -13.4 DEGREES REMARK 500 DA E 903 O3' - P - OP1 ANGL. DEV. = -17.3 DEGREES REMARK 500 DA E 903 O5' - P - OP1 ANGL. DEV. = 8.9 DEGREES REMARK 500 DC E 905 C1' - O4' - C4' ANGL. DEV. = -6.8 DEGREES REMARK 500 DC E 905 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG E 906 O4' - C1' - N9 ANGL. DEV. = -4.6 DEGREES REMARK 500 DC E 907 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DC E 911 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DC E 914 O4' - C1' - N1 ANGL. DEV. = 4.0 DEGREES REMARK 500 DA E 916 C1' - O4' - C4' ANGL. DEV. = -6.4 DEGREES REMARK 500 DA E 916 O4' - C1' - N9 ANGL. DEV. = 5.3 DEGREES REMARK 500 DA E 917 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DC E 918 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 VAL B1287 CB - CA - C ANGL. DEV. = -12.1 DEGREES REMARK 500 DT H1803 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DG H1805 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG H1813 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 DC J1901 O4' - C1' - N1 ANGL. DEV. = 5.1 DEGREES REMARK 500 DT J1902 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DC J1905 C1' - O4' - C4' ANGL. DEV. = -6.4 DEGREES REMARK 500 DC J1907 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DC J1911 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DA J1916 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 10 52.94 32.85 REMARK 500 LEU A 68 65.33 -151.38 REMARK 500 ARG A 77 68.78 -112.80 REMARK 500 SER A 96 133.65 -171.26 REMARK 500 ASP A 105 22.11 -141.88 REMARK 500 ASN A 234 43.57 -155.62 REMARK 500 LYS A 278 -22.62 85.08 REMARK 500 TYR B1010 54.80 29.25 REMARK 500 LEU B1023 -38.32 -34.25 REMARK 500 ARG B1036 -77.86 -69.75 REMARK 500 ARG B1077 78.48 -116.02 REMARK 500 ASN B1234 43.80 -154.23 REMARK 500 LYS B1278 -21.05 89.63 REMARK 500 LEU B1293 15.44 59.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 415 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 7 OD1 REMARK 620 2 ASP A 105 OD1 83.6 REMARK 620 3 GLU A 106 OE2 102.6 123.0 REMARK 620 4 TTP A 414 O1A 76.8 89.4 147.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 416 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 7 OD1 REMARK 620 2 PHE A 8 O 101.7 REMARK 620 3 ASP A 105 OD2 84.4 78.7 REMARK 620 4 TTP A 414 O1A 88.5 160.7 86.1 REMARK 620 5 TTP A 414 O1B 168.1 86.1 88.3 81.5 REMARK 620 6 TTP A 414 O3G 105.6 107.4 166.6 85.2 80.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 417 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 181 O REMARK 620 2 ILE A 186 O 79.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1415 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B1007 OD2 REMARK 620 2 GLU B1106 OE2 104.5 REMARK 620 3 DDG H1815 OP1 138.7 76.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1416 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B1007 OD1 REMARK 620 2 PHE B1008 O 99.4 REMARK 620 3 ASP B1105 OD2 88.2 84.8 REMARK 620 4 TTP B1414 O1A 94.0 163.4 86.1 REMARK 620 5 TTP B1414 O1B 172.2 87.6 88.9 78.5 REMARK 620 6 TTP B1414 O3G 105.0 104.9 161.8 80.6 76.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1417 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B1181 O REMARK 620 2 ILE B1186 O 82.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TTP A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 417 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AF E 926 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TTP B 1414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1417 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AF J 1926 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KHG RELATED DB: PDB REMARK 900 DPO4 EXTENSION TERNARY COMPLEX WITH MISINSERTED A OPPOSITE THE 2- REMARK 900 AMINOFLUORENE-GUANINE [AF]G LESION. REMARK 900 RELATED ID: 3KHH RELATED DB: PDB REMARK 900 DPO4 EXTENSION TERNARY COMPLEX WITH A C BASE OPPOSITE THE 2- REMARK 900 AMINOFLUORENE-GUANINE [AF]G LESION. REMARK 900 RELATED ID: 3KHR RELATED DB: PDB REMARK 900 DPO4 POST-EXTENSION TERNARY COMPLEX WITH THE CORRECT C OPPOSITE THE REMARK 900 2-AMINOFLUORENE-GUANINE [AF]G LESION. REMARK 999 REMARK 999 SEQUENCE REMARK 999 FOR CHAINS E AND J, THE 19-MER SEQUENCE OF THE DNA OLIGO REMARK 999 IS 5'-C T A A C [AF]G C T A C C A T C C A A C C-3', WHERE REMARK 999 [AF]G DENOTES A COVALENT MODIFICATION BY AF ON THE G BASE REMARK 999 906 IN CHAIN E AND THE G BASE 1906 IN CHAIN J. DBREF 3KHL A 2 341 UNP Q97W02 DPO42_SULSO 2 341 DBREF 3KHL D 803 815 PDB 3KHL 3KHL 803 815 DBREF 3KHL E 901 919 PDB 3KHL 3KHL 901 919 DBREF 3KHL B 1002 1341 UNP Q97W02 DPO42_SULSO 2 341 DBREF 3KHL H 1803 1815 PDB 3KHL 3KHL 1803 1815 DBREF 3KHL J 1901 1919 PDB 3KHL 3KHL 1901 1919 SEQADV 3KHL GLY A 1 UNP Q97W02 EXPRESSION TAG SEQADV 3KHL DDG D 815 PDB 3KHL G 13 ENGINEERED MUTATION SEQADV 3KHL GLY B 1001 UNP Q97W02 EXPRESSION TAG SEQADV 3KHL DDG H 1815 PDB 3KHL G 13 ENGINEERED MUTATION SEQRES 1 A 341 GLY ILE VAL LEU PHE VAL ASP PHE ASP TYR PHE TYR ALA SEQRES 2 A 341 GLN VAL GLU GLU VAL LEU ASN PRO SER LEU LYS GLY LYS SEQRES 3 A 341 PRO VAL VAL VAL CYS VAL PHE SER GLY ARG PHE GLU ASP SEQRES 4 A 341 SER GLY ALA VAL ALA THR ALA ASN TYR GLU ALA ARG LYS SEQRES 5 A 341 PHE GLY VAL LYS ALA GLY ILE PRO ILE VAL GLU ALA LYS SEQRES 6 A 341 LYS ILE LEU PRO ASN ALA VAL TYR LEU PRO MET ARG LYS SEQRES 7 A 341 GLU VAL TYR GLN GLN VAL SER SER ARG ILE MET ASN LEU SEQRES 8 A 341 LEU ARG GLU TYR SER GLU LYS ILE GLU ILE ALA SER ILE SEQRES 9 A 341 ASP GLU ALA TYR LEU ASP ILE SER ASP LYS VAL ARG ASP SEQRES 10 A 341 TYR ARG GLU ALA TYR ASN LEU GLY LEU GLU ILE LYS ASN SEQRES 11 A 341 LYS ILE LEU GLU LYS GLU LYS ILE THR VAL THR VAL GLY SEQRES 12 A 341 ILE SER LYS ASN LYS VAL PHE ALA LYS ILE ALA ALA ASP SEQRES 13 A 341 MET ALA LYS PRO ASN GLY ILE LYS VAL ILE ASP ASP GLU SEQRES 14 A 341 GLU VAL LYS ARG LEU ILE ARG GLU LEU ASP ILE ALA ASP SEQRES 15 A 341 VAL PRO GLY ILE GLY ASN ILE THR ALA GLU LYS LEU LYS SEQRES 16 A 341 LYS LEU GLY ILE ASN LYS LEU VAL ASP THR LEU SER ILE SEQRES 17 A 341 GLU PHE ASP LYS LEU LYS GLY MET ILE GLY GLU ALA LYS SEQRES 18 A 341 ALA LYS TYR LEU ILE SER LEU ALA ARG ASP GLU TYR ASN SEQRES 19 A 341 GLU PRO ILE ARG THR ARG VAL ARG LYS SER ILE GLY ARG SEQRES 20 A 341 ILE VAL THR MET LYS ARG ASN SER ARG ASN LEU GLU GLU SEQRES 21 A 341 ILE LYS PRO TYR LEU PHE ARG ALA ILE GLU GLU SER TYR SEQRES 22 A 341 TYR LYS LEU ASP LYS ARG ILE PRO LYS ALA ILE HIS VAL SEQRES 23 A 341 VAL ALA VAL THR GLU ASP LEU ASP ILE VAL SER ARG GLY SEQRES 24 A 341 ARG THR PHE PRO HIS GLY ILE SER LYS GLU THR ALA TYR SEQRES 25 A 341 SER GLU SER VAL LYS LEU LEU GLN LYS ILE LEU GLU GLU SEQRES 26 A 341 ASP GLU ARG LYS ILE ARG ARG ILE GLY VAL ARG PHE SER SEQRES 27 A 341 LYS PHE ILE SEQRES 1 D 13 DT DT DG DG DA DT DG DG DT DA DG DA DDG SEQRES 1 E 20 DC DC DT DA DA DC DG DC DT DA DC DC DA SEQRES 2 E 20 DT DC DC DA DA DC DC SEQRES 1 B 341 GLY ILE VAL LEU PHE VAL ASP PHE ASP TYR PHE TYR ALA SEQRES 2 B 341 GLN VAL GLU GLU VAL LEU ASN PRO SER LEU LYS GLY LYS SEQRES 3 B 341 PRO VAL VAL VAL CYS VAL PHE SER GLY ARG PHE GLU ASP SEQRES 4 B 341 SER GLY ALA VAL ALA THR ALA ASN TYR GLU ALA ARG LYS SEQRES 5 B 341 PHE GLY VAL LYS ALA GLY ILE PRO ILE VAL GLU ALA LYS SEQRES 6 B 341 LYS ILE LEU PRO ASN ALA VAL TYR LEU PRO MET ARG LYS SEQRES 7 B 341 GLU VAL TYR GLN GLN VAL SER SER ARG ILE MET ASN LEU SEQRES 8 B 341 LEU ARG GLU TYR SER GLU LYS ILE GLU ILE ALA SER ILE SEQRES 9 B 341 ASP GLU ALA TYR LEU ASP ILE SER ASP LYS VAL ARG ASP SEQRES 10 B 341 TYR ARG GLU ALA TYR ASN LEU GLY LEU GLU ILE LYS ASN SEQRES 11 B 341 LYS ILE LEU GLU LYS GLU LYS ILE THR VAL THR VAL GLY SEQRES 12 B 341 ILE SER LYS ASN LYS VAL PHE ALA LYS ILE ALA ALA ASP SEQRES 13 B 341 MET ALA LYS PRO ASN GLY ILE LYS VAL ILE ASP ASP GLU SEQRES 14 B 341 GLU VAL LYS ARG LEU ILE ARG GLU LEU ASP ILE ALA ASP SEQRES 15 B 341 VAL PRO GLY ILE GLY ASN ILE THR ALA GLU LYS LEU LYS SEQRES 16 B 341 LYS LEU GLY ILE ASN LYS LEU VAL ASP THR LEU SER ILE SEQRES 17 B 341 GLU PHE ASP LYS LEU LYS GLY MET ILE GLY GLU ALA LYS SEQRES 18 B 341 ALA LYS TYR LEU ILE SER LEU ALA ARG ASP GLU TYR ASN SEQRES 19 B 341 GLU PRO ILE ARG THR ARG VAL ARG LYS SER ILE GLY ARG SEQRES 20 B 341 ILE VAL THR MET LYS ARG ASN SER ARG ASN LEU GLU GLU SEQRES 21 B 341 ILE LYS PRO TYR LEU PHE ARG ALA ILE GLU GLU SER TYR SEQRES 22 B 341 TYR LYS LEU ASP LYS ARG ILE PRO LYS ALA ILE HIS VAL SEQRES 23 B 341 VAL ALA VAL THR GLU ASP LEU ASP ILE VAL SER ARG GLY SEQRES 24 B 341 ARG THR PHE PRO HIS GLY ILE SER LYS GLU THR ALA TYR SEQRES 25 B 341 SER GLU SER VAL LYS LEU LEU GLN LYS ILE LEU GLU GLU SEQRES 26 B 341 ASP GLU ARG LYS ILE ARG ARG ILE GLY VAL ARG PHE SER SEQRES 27 B 341 LYS PHE ILE SEQRES 1 H 13 DT DT DG DG DA DT DG DG DT DA DG DA DDG SEQRES 1 J 20 DC DC DT DA DA DC DG DC DT DA DC DC DA SEQRES 2 J 20 DT DC DC DA DA DC DC MODRES 3KHL DDG D 815 DG MODRES 3KHL DDG H 1815 DG HET DDG D 815 21 HET DDG H1815 21 HET TTP A 414 29 HET CA A 415 1 HET CA A 416 1 HET CA A 417 1 HET AF E 926 14 HET TTP B1414 29 HET CA B1415 1 HET CA B1416 1 HET CA B1417 1 HET AF J1926 14 HETNAM DDG 2',3'-DIDEOXY-GUANOSINE-5'-MONOPHOSPHATE HETNAM TTP THYMIDINE-5'-TRIPHOSPHATE HETNAM CA CALCIUM ION HETNAM AF 2-AMINOFLUORENE FORMUL 2 DDG 2(C10 H14 N5 O6 P) FORMUL 7 TTP 2(C10 H17 N2 O14 P3) FORMUL 8 CA 6(CA 2+) FORMUL 11 AF 2(C13 H11 N) FORMUL 17 HOH *316(H2 O) HELIX 1 1 TYR A 10 ASN A 20 1 11 HELIX 2 2 PRO A 21 LYS A 24 5 4 HELIX 3 3 ASN A 47 LYS A 52 1 6 HELIX 4 4 PRO A 60 LEU A 68 1 9 HELIX 5 5 ARG A 77 GLU A 94 1 18 HELIX 6 6 ASP A 117 LYS A 137 1 21 HELIX 7 7 ASN A 147 LYS A 159 1 13 HELIX 8 8 ASP A 167 LEU A 178 1 12 HELIX 9 9 ASP A 179 VAL A 183 5 5 HELIX 10 10 GLY A 187 LEU A 197 1 11 HELIX 11 11 LYS A 201 SER A 207 5 7 HELIX 12 12 GLU A 209 GLY A 218 1 10 HELIX 13 13 GLY A 218 ARG A 230 1 13 HELIX 14 14 ASN A 257 ASP A 277 1 21 HELIX 15 15 SER A 307 ASP A 326 1 20 HELIX 16 16 TYR B 1010 ASN B 1020 1 11 HELIX 17 17 PRO B 1021 LYS B 1024 5 4 HELIX 18 18 ASN B 1047 LYS B 1052 1 6 HELIX 19 19 PRO B 1060 LEU B 1068 1 9 HELIX 20 20 ARG B 1077 ARG B 1093 1 17 HELIX 21 21 ASP B 1117 LYS B 1137 1 21 HELIX 22 22 ASN B 1147 LYS B 1159 1 13 HELIX 23 23 ASP B 1167 LEU B 1178 1 12 HELIX 24 24 ASP B 1179 VAL B 1183 5 5 HELIX 25 25 GLY B 1187 LEU B 1197 1 11 HELIX 26 26 LYS B 1201 SER B 1207 5 7 HELIX 27 27 GLU B 1209 GLY B 1218 1 10 HELIX 28 28 GLY B 1218 ARG B 1230 1 13 HELIX 29 29 ASN B 1257 LEU B 1276 1 20 HELIX 30 30 SER B 1307 ASP B 1326 1 20 SHEET 1 A 5 ILE A 99 SER A 103 0 SHEET 2 A 5 GLU A 106 ASP A 110 -1 O TYR A 108 N GLU A 100 SHEET 3 A 5 VAL A 3 PHE A 8 -1 N LEU A 4 O LEU A 109 SHEET 4 A 5 VAL A 140 SER A 145 -1 O GLY A 143 N PHE A 5 SHEET 5 A 5 ILE A 163 VAL A 165 1 O LYS A 164 N ILE A 144 SHEET 1 B 3 GLY A 41 ALA A 46 0 SHEET 2 B 3 VAL A 28 PHE A 33 -1 N VAL A 32 O ALA A 42 SHEET 3 B 3 VAL A 72 PRO A 75 1 O LEU A 74 N CYS A 31 SHEET 1 C 4 SER A 244 SER A 255 0 SHEET 2 C 4 ILE A 330 PHE A 340 -1 O PHE A 337 N ILE A 245 SHEET 3 C 4 PRO A 281 THR A 290 -1 N VAL A 289 O ARG A 331 SHEET 4 C 4 ILE A 295 THR A 301 -1 O VAL A 296 N ALA A 288 SHEET 1 D 5 ILE B1099 SER B1103 0 SHEET 2 D 5 GLU B1106 ASP B1110 -1 O TYR B1108 N GLU B1100 SHEET 3 D 5 VAL B1003 PHE B1008 -1 N LEU B1004 O LEU B1109 SHEET 4 D 5 VAL B1140 SER B1145 -1 O GLY B1143 N PHE B1005 SHEET 5 D 5 ILE B1163 VAL B1165 1 O LYS B1164 N ILE B1144 SHEET 1 E 3 GLY B1041 ALA B1046 0 SHEET 2 E 3 VAL B1028 PHE B1033 -1 N VAL B1030 O ALA B1044 SHEET 3 E 3 VAL B1072 PRO B1075 1 O LEU B1074 N CYS B1031 SHEET 1 F 4 SER B1244 SER B1255 0 SHEET 2 F 4 ILE B1330 PHE B1340 -1 O ILE B1330 N SER B1255 SHEET 3 F 4 PRO B1281 THR B1290 -1 N VAL B1289 O ARG B1331 SHEET 4 F 4 ILE B1295 THR B1301 -1 O ARG B1298 N VAL B1286 LINK O3' DA D 814 P DDG D 815 1555 1555 1.60 LINK C8 DG E 906 N AF E 926 1555 1555 1.46 LINK O3' DA H1814 P DDG H1815 1555 1555 1.60 LINK C8 DG J1906 N AF J1926 1555 1555 1.45 LINK OD1 ASP A 7 CA CA A 415 1555 1555 2.84 LINK OD1 ASP A 7 CA CA A 416 1555 1555 2.32 LINK O PHE A 8 CA CA A 416 1555 1555 2.31 LINK OD1 ASP A 105 CA CA A 415 1555 1555 2.49 LINK OD2 ASP A 105 CA CA A 416 1555 1555 2.31 LINK OE2 GLU A 106 CA CA A 415 1555 1555 2.85 LINK O ALA A 181 CA CA A 417 1555 1555 2.34 LINK O ILE A 186 CA CA A 417 1555 1555 2.33 LINK O1A TTP A 414 CA CA A 415 1555 1555 2.33 LINK O1A TTP A 414 CA CA A 416 1555 1555 2.32 LINK O1B TTP A 414 CA CA A 416 1555 1555 2.30 LINK O3G TTP A 414 CA CA A 416 1555 1555 2.47 LINK OD2 ASP B1007 CA CA B1415 1555 1555 2.70 LINK OD1 ASP B1007 CA CA B1416 1555 1555 2.30 LINK O PHE B1008 CA CA B1416 1555 1555 2.30 LINK OD2 ASP B1105 CA CA B1416 1555 1555 2.31 LINK OE2 GLU B1106 CA CA B1415 1555 1555 2.32 LINK O ALA B1181 CA CA B1417 1555 1555 2.33 LINK O ILE B1186 CA CA B1417 1555 1555 2.85 LINK O1A TTP B1414 CA CA B1416 1555 1555 2.35 LINK O1B TTP B1414 CA CA B1416 1555 1555 2.32 LINK O3G TTP B1414 CA CA B1416 1555 1555 2.38 LINK CA CA B1415 OP1 DDG H1815 1555 1555 2.81 CISPEP 1 LYS A 159 PRO A 160 0 -4.05 CISPEP 2 LYS B 1159 PRO B 1160 0 1.76 SITE 1 AC1 18 ASP A 7 PHE A 8 TYR A 10 PHE A 11 SITE 2 AC1 18 TYR A 12 ALA A 44 THR A 45 TYR A 48 SITE 3 AC1 18 ARG A 51 ALA A 57 ASP A 105 LYS A 159 SITE 4 AC1 18 CA A 415 CA A 416 HOH A 529 HOH D 510 SITE 5 AC1 18 DDG D 815 DA E 904 SITE 1 AC2 7 ASP A 7 ASP A 105 GLU A 106 TTP A 414 SITE 2 AC2 7 CA A 416 HOH D 510 DDG D 815 SITE 1 AC3 5 ASP A 7 PHE A 8 ASP A 105 TTP A 414 SITE 2 AC3 5 CA A 415 SITE 1 AC4 7 ALA A 181 ILE A 186 HOH A 512 HOH A 513 SITE 2 AC4 7 HOH A 514 HOH A 515 DA D 814 SITE 1 AC5 8 ILE A 248 HIS A 285 VAL A 287 VAL A 335 SITE 2 AC5 8 ARG A 336 DC E 905 DG E 906 DC E 907 SITE 1 AC6 20 HOH B 54 HOH B 72 ASP B1007 PHE B1008 SITE 2 AC6 20 ASP B1009 TYR B1010 PHE B1011 TYR B1012 SITE 3 AC6 20 ALA B1044 THR B1045 TYR B1048 ARG B1051 SITE 4 AC6 20 ALA B1057 ASP B1105 LYS B1159 CA B1415 SITE 5 AC6 20 CA B1416 HOH B1519 DDG H1815 DA J1904 SITE 1 AC7 7 HOH B 161 ASP B1007 GLU B1106 LYS B1159 SITE 2 AC7 7 TTP B1414 HOH B1519 DDG H1815 SITE 1 AC8 4 ASP B1007 PHE B1008 ASP B1105 TTP B1414 SITE 1 AC9 4 ALA B1181 ILE B1186 HOH B1512 HOH H1511 SITE 1 BC1 8 ILE B1248 HIS B1285 VAL B1287 VAL B1335 SITE 2 BC1 8 ARG B1336 DC J1905 DG J1906 DC J1907 CRYST1 52.389 52.674 100.103 82.19 76.40 70.07 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019088 -0.006922 -0.004203 0.00000 SCALE2 0.000000 0.020195 -0.001234 0.00000 SCALE3 0.000000 0.000000 0.010297 0.00000