HEADER TRANSFERASE,TOXIN 31-OCT-09 3KI6 TITLE CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX TITLE 2 WITH INHIBITOR GP-L COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHOLIX TOXIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 459-665; COMPND 5 EC: 2.4.2.36; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 STRAIN: TP; SOURCE 5 GENE: CHXA, TOXA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ER2566; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28+ KEYWDS ADP-RIBOSYL TRANSFERASE, ALPHA-BETA COMPLEX, DIPHTHAMIDE, KEYWDS 2 TRANSFERASE, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR R.JORGENSEN,P.R.EDWARDS,A.R.MERRILL REVDAT 3 06-SEP-23 3KI6 1 REMARK SEQADV REVDAT 2 01-NOV-17 3KI6 1 REMARK REVDAT 1 27-OCT-10 3KI6 0 JRNL AUTH R.JORGENSEN,P.R.EDWARDS,A.R.MERRILL JRNL TITL STRUCTURE FUNCTION ANALYSIS OF SOLUBLE INHIBITORS OF CHOLIX JRNL TITL 2 TOXIN FROM VIBRIO CHOLERAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 31099 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1562 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.54 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.58 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2015 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.1950 REMARK 3 BIN FREE R VALUE SET COUNT : 90 REMARK 3 BIN FREE R VALUE : 0.2500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1539 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.079 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.079 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.044 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.215 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1632 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2230 ; 1.601 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 204 ; 5.493 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 79 ;28.995 ;23.797 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 250 ;14.088 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;16.644 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 239 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1277 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 715 ; 0.205 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1137 ; 0.318 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 197 ; 0.115 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 27 ; 0.171 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.115 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1022 ; 1.117 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1603 ; 1.596 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 725 ; 2.493 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 623 ; 3.783 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 423 A 436 REMARK 3 ORIGIN FOR THE GROUP (A): 39.3850 53.6010 14.3810 REMARK 3 T TENSOR REMARK 3 T11: -0.0548 T22: -0.0231 REMARK 3 T33: 0.1112 T12: 0.0008 REMARK 3 T13: 0.0166 T23: 0.0188 REMARK 3 L TENSOR REMARK 3 L11: 4.2653 L22: 8.2061 REMARK 3 L33: 2.2017 L12: 5.3875 REMARK 3 L13: 3.0150 L23: 3.4939 REMARK 3 S TENSOR REMARK 3 S11: -0.2154 S12: 0.0924 S13: -0.0862 REMARK 3 S21: -0.0785 S22: 0.1486 S23: -0.1009 REMARK 3 S31: 0.0014 S32: 0.1767 S33: 0.0667 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 437 A 450 REMARK 3 ORIGIN FOR THE GROUP (A): 39.1200 67.0680 17.4550 REMARK 3 T TENSOR REMARK 3 T11: -0.0640 T22: 0.0140 REMARK 3 T33: 0.0535 T12: -0.0042 REMARK 3 T13: -0.0064 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 1.9844 L22: 6.7572 REMARK 3 L33: 4.4618 L12: 0.4113 REMARK 3 L13: 0.9045 L23: -4.6128 REMARK 3 S TENSOR REMARK 3 S11: -0.0452 S12: -0.1042 S13: 0.0440 REMARK 3 S21: 0.0899 S22: -0.0033 S23: -0.4548 REMARK 3 S31: -0.1615 S32: 0.0688 S33: 0.0485 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 451 A 487 REMARK 3 ORIGIN FOR THE GROUP (A): 29.2600 61.7110 5.3670 REMARK 3 T TENSOR REMARK 3 T11: 0.0063 T22: 0.0069 REMARK 3 T33: -0.0052 T12: 0.0087 REMARK 3 T13: 0.0068 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 1.2043 L22: 2.0683 REMARK 3 L33: 0.7068 L12: -0.0206 REMARK 3 L13: -0.0514 L23: -0.5076 REMARK 3 S TENSOR REMARK 3 S11: 0.0343 S12: 0.1105 S13: 0.0007 REMARK 3 S21: -0.2075 S22: -0.0268 S23: 0.0186 REMARK 3 S31: 0.0973 S32: 0.0979 S33: -0.0075 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 488 A 507 REMARK 3 ORIGIN FOR THE GROUP (A): 19.2240 60.1300 9.9880 REMARK 3 T TENSOR REMARK 3 T11: -0.0028 T22: 0.0167 REMARK 3 T33: 0.0263 T12: -0.0084 REMARK 3 T13: -0.0089 T23: 0.0106 REMARK 3 L TENSOR REMARK 3 L11: 0.0525 L22: 1.5280 REMARK 3 L33: 1.4514 L12: -0.1846 REMARK 3 L13: 0.1612 L23: -0.1888 REMARK 3 S TENSOR REMARK 3 S11: -0.0023 S12: -0.0401 S13: -0.0537 REMARK 3 S21: -0.1355 S22: 0.0099 S23: 0.1058 REMARK 3 S31: 0.0438 S32: -0.1802 S33: -0.0077 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 508 A 522 REMARK 3 ORIGIN FOR THE GROUP (A): 20.9550 37.9610 10.3760 REMARK 3 T TENSOR REMARK 3 T11: 0.1405 T22: -0.0309 REMARK 3 T33: -0.0695 T12: -0.0552 REMARK 3 T13: 0.0211 T23: -0.0183 REMARK 3 L TENSOR REMARK 3 L11: 12.5228 L22: 4.9362 REMARK 3 L33: 10.9358 L12: 4.7802 REMARK 3 L13: 10.3778 L23: 3.7350 REMARK 3 S TENSOR REMARK 3 S11: -0.6988 S12: 0.0784 S13: -0.4109 REMARK 3 S21: -1.0574 S22: 0.5075 S23: -0.3012 REMARK 3 S31: -0.8749 S32: -0.1068 S33: 0.1914 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 523 A 544 REMARK 3 ORIGIN FOR THE GROUP (A): 26.1240 68.3270 8.1190 REMARK 3 T TENSOR REMARK 3 T11: -0.0026 T22: -0.0071 REMARK 3 T33: -0.0060 T12: -0.0092 REMARK 3 T13: 0.0103 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 0.6782 L22: 1.4710 REMARK 3 L33: 0.7454 L12: 0.1475 REMARK 3 L13: -0.0262 L23: -0.3181 REMARK 3 S TENSOR REMARK 3 S11: -0.0177 S12: 0.0100 S13: 0.0320 REMARK 3 S21: -0.1131 S22: 0.0084 S23: -0.1008 REMARK 3 S31: -0.0247 S32: 0.0426 S33: 0.0093 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 545 A 557 REMARK 3 ORIGIN FOR THE GROUP (A): 7.7350 71.9800 2.2510 REMARK 3 T TENSOR REMARK 3 T11: -0.0473 T22: 0.0056 REMARK 3 T33: 0.0422 T12: 0.0171 REMARK 3 T13: -0.0580 T23: 0.0287 REMARK 3 L TENSOR REMARK 3 L11: 2.1726 L22: 4.5799 REMARK 3 L33: 9.3028 L12: 1.4091 REMARK 3 L13: -2.5866 L23: -2.1116 REMARK 3 S TENSOR REMARK 3 S11: -0.2021 S12: 0.0543 S13: 0.0635 REMARK 3 S21: -0.3343 S22: 0.1832 S23: 0.4008 REMARK 3 S31: 0.0899 S32: -0.4556 S33: 0.0189 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 558 A 601 REMARK 3 ORIGIN FOR THE GROUP (A): 20.6910 67.7710 4.0590 REMARK 3 T TENSOR REMARK 3 T11: 0.0053 T22: -0.0106 REMARK 3 T33: -0.0132 T12: 0.0073 REMARK 3 T13: -0.0051 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 0.6762 L22: 1.2442 REMARK 3 L33: 0.9005 L12: 0.0282 REMARK 3 L13: 0.1430 L23: -0.2529 REMARK 3 S TENSOR REMARK 3 S11: 0.0416 S12: 0.0207 S13: -0.0110 REMARK 3 S21: -0.2153 S22: -0.0051 S23: 0.0896 REMARK 3 S31: 0.0047 S32: 0.0021 S33: -0.0365 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 602 A 615 REMARK 3 ORIGIN FOR THE GROUP (A): 23.0880 54.0220 22.0250 REMARK 3 T TENSOR REMARK 3 T11: -0.0112 T22: -0.0133 REMARK 3 T33: -0.0093 T12: -0.0063 REMARK 3 T13: 0.0091 T23: 0.0203 REMARK 3 L TENSOR REMARK 3 L11: 1.4533 L22: 16.9455 REMARK 3 L33: 5.7138 L12: 3.5796 REMARK 3 L13: 1.4507 L23: 8.1263 REMARK 3 S TENSOR REMARK 3 S11: 0.0559 S12: -0.1506 S13: 0.0354 REMARK 3 S21: 0.5458 S22: -0.2274 S23: 0.3618 REMARK 3 S31: 0.3901 S32: -0.1487 S33: 0.1715 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 616 A 628 REMARK 3 ORIGIN FOR THE GROUP (A): 24.9320 73.5380 15.9780 REMARK 3 T TENSOR REMARK 3 T11: -0.0021 T22: -0.0130 REMARK 3 T33: 0.0197 T12: -0.0005 REMARK 3 T13: 0.0051 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 3.2234 L22: 3.3075 REMARK 3 L33: 4.5816 L12: -2.4458 REMARK 3 L13: 3.2692 L23: -2.9843 REMARK 3 S TENSOR REMARK 3 S11: -0.1456 S12: -0.1325 S13: 0.0859 REMARK 3 S21: 0.1289 S22: 0.1448 S23: -0.0097 REMARK 3 S31: -0.3493 S32: -0.0003 S33: 0.0007 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3KI6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1000056023. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : WHITE BEAM SLITS, CRYO-COOLED REMARK 200 FIRST AND SAGITTALLY BENT SECOND REMARK 200 CRYSTAL OF DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR (DCM), VERTICALLY REMARK 200 FOCUSING MIRROR (VFM) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31156 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.25600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2Q6M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% PEG-8000, 0.02 M KH2PO4, PH 7.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.17450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.30000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.43500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.30000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.17450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.43500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 477 REMARK 465 PRO A 478 REMARK 465 ARG A 479 REMARK 465 GLY A 480 REMARK 465 ASN A 481 REMARK 465 ASN A 482 REMARK 465 THR A 483 REMARK 465 GLU A 484 REMARK 465 ARG A 629 REMARK 465 LYS A 630 REMARK 465 ASP A 631 REMARK 465 GLU A 632 REMARK 465 LEU A 633 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 525 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 473 129.82 -173.12 REMARK 500 ARG A 566 -113.87 -100.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 COMPOUND G9L IS NAMED COMPOUND P6 IN THE PRIMARY CITATION REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE G9L A 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ESS RELATED DB: PDB REMARK 900 CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX REMARK 900 WITH THE 1,8-NAPHTHALIMIDE INHIBITOR REMARK 900 RELATED ID: 2Q6M RELATED DB: PDB REMARK 900 CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX REMARK 900 WITH THE PJ34 INHIBITOR REMARK 900 RELATED ID: 2Q5T RELATED DB: PDB REMARK 900 FULL-LENGTH CHOLIX TOXIN FROM VIBRIO CHOLERAE REMARK 900 RELATED ID: 3KI0 RELATED DB: PDB REMARK 900 CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX REMARK 900 WITH INHIBITOR GP-D REMARK 900 RELATED ID: 3KI1 RELATED DB: PDB REMARK 900 CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX REMARK 900 WITH INHIBITOR GP-F REMARK 900 RELATED ID: 3KI2 RELATED DB: PDB REMARK 900 CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX REMARK 900 WITH INHIBITOR GP-G REMARK 900 RELATED ID: 3KI3 RELATED DB: PDB REMARK 900 CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX REMARK 900 WITH INHIBITOR GP-H REMARK 900 RELATED ID: 3KI4 RELATED DB: PDB REMARK 900 CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX REMARK 900 WITH INHIBITOR GP-P REMARK 900 RELATED ID: 3KI5 RELATED DB: PDB REMARK 900 CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX REMARK 900 WITH INHIBITOR GP-M REMARK 900 RELATED ID: 3KI7 RELATED DB: PDB REMARK 900 CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX REMARK 900 WITH INHIBITOR GP-I DBREF 3KI6 A 427 633 UNP Q5EK40 Q5EK40_VIBCH 459 665 SEQADV 3KI6 GLY A 423 UNP Q5EK40 EXPRESSION TAG SEQADV 3KI6 SER A 424 UNP Q5EK40 EXPRESSION TAG SEQADV 3KI6 HIS A 425 UNP Q5EK40 EXPRESSION TAG SEQADV 3KI6 MET A 426 UNP Q5EK40 EXPRESSION TAG SEQRES 1 A 211 GLY SER HIS MET ALA VAL ILE THR PRO GLN GLY VAL THR SEQRES 2 A 211 ASN TRP THR TYR GLN GLU LEU GLU ALA THR HIS GLN ALA SEQRES 3 A 211 LEU THR ARG GLU GLY TYR VAL PHE VAL GLY TYR HIS GLY SEQRES 4 A 211 THR ASN HIS VAL ALA ALA GLN THR ILE VAL ASN ARG ILE SEQRES 5 A 211 ALA PRO VAL PRO ARG GLY ASN ASN THR GLU ASN GLU GLU SEQRES 6 A 211 LYS TRP GLY GLY LEU TYR VAL ALA THR HIS ALA GLU VAL SEQRES 7 A 211 ALA HIS GLY TYR ALA ARG ILE LYS GLU GLY THR GLY GLU SEQRES 8 A 211 TYR GLY LEU PRO THR ARG ALA GLU ARG ASP ALA ARG GLY SEQRES 9 A 211 VAL MET LEU ARG VAL TYR ILE PRO ARG ALA SER LEU GLU SEQRES 10 A 211 ARG PHE TYR ARG THR ASN THR PRO LEU GLU ASN ALA GLU SEQRES 11 A 211 GLU HIS ILE THR GLN VAL ILE GLY HIS SER LEU PRO LEU SEQRES 12 A 211 ARG ASN GLU ALA PHE THR GLY PRO GLU SER ALA GLY GLY SEQRES 13 A 211 GLU ASP GLU THR VAL ILE GLY TRP ASP MET ALA ILE HIS SEQRES 14 A 211 ALA VAL ALA ILE PRO SER THR ILE PRO GLY ASN ALA TYR SEQRES 15 A 211 GLU GLU LEU ALA ILE ASP GLU GLU ALA VAL ALA LYS GLU SEQRES 16 A 211 GLN SER ILE SER THR LYS PRO PRO TYR LYS GLU ARG LYS SEQRES 17 A 211 ASP GLU LEU HET G9L A 1 26 HETNAM G9L 8-FLUORO-2-(3-PIPERIDIN-1-YLPROPANOYL)-1,3,4,5- HETNAM 2 G9L TETRAHYDROBENZO[C][1,6]NAPHTHYRIDIN-6(2H)-ONE FORMUL 2 G9L C20 H24 F N3 O2 FORMUL 3 HOH *270(H2 O) HELIX 1 1 THR A 438 GLU A 452 1 15 HELIX 2 2 ASN A 463 ARG A 473 1 11 HELIX 3 3 HIS A 497 GLY A 503 1 7 HELIX 4 4 GLY A 512 LEU A 516 5 5 HELIX 5 5 THR A 518 ALA A 524 1 7 HELIX 6 6 ALA A 536 GLU A 539 5 4 HELIX 7 7 PRO A 547 ASN A 550 5 4 HELIX 8 8 ALA A 551 GLY A 560 1 10 HELIX 9 9 GLY A 585 ILE A 590 1 6 HELIX 10 10 ASP A 610 GLN A 618 1 9 HELIX 11 11 SER A 619 SER A 621 5 3 SHEET 1 A 2 VAL A 428 THR A 430 0 SHEET 2 A 2 GLY A 433 THR A 435 -1 O THR A 435 N VAL A 428 SHEET 1 B 3 TYR A 454 THR A 462 0 SHEET 2 B 3 VAL A 527 PRO A 534 -1 O VAL A 531 N VAL A 457 SHEET 3 B 3 VAL A 593 PRO A 600 -1 O ILE A 595 N ARG A 530 SHEET 1 C 4 LEU A 492 VAL A 494 0 SHEET 2 C 4 ASP A 580 ILE A 584 -1 O ILE A 584 N LEU A 492 SHEET 3 C 4 ALA A 569 PRO A 573 -1 N PHE A 570 O VAL A 583 SHEET 4 C 4 PHE A 541 ARG A 543 1 N TYR A 542 O ALA A 569 CISPEP 1 LEU A 563 PRO A 564 0 6.51 SITE 1 AC1 11 HIS A 460 GLY A 461 GLU A 486 TRP A 489 SITE 2 AC1 11 TYR A 493 VAL A 494 ALA A 495 VAL A 500 SITE 3 AC1 11 ALA A 501 TYR A 504 GLU A 581 CRYST1 40.349 64.870 78.600 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024784 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015415 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012723 0.00000