data_3KKG # _entry.id 3KKG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3KKG pdb_00003kkg 10.2210/pdb3kkg/pdb RCSB RCSB056103 ? ? WWPDB D_1000056103 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 396293 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3KKG _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-11-05 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of Putative SnoaL-like polyketide cyclase (YP_509242.1) from Jannaschia Sp. CCS1 at 1.40 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3KKG _cell.length_a 57.036 _cell.length_b 57.036 _cell.length_c 181.140 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3KKG _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative SnoaL-like polyketide cyclase' 16248.476 1 ? ? 'sequence database residues 28-172' ? 2 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 3 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 2 ? ? ? ? 4 non-polymer syn 'TRIETHYLENE GLYCOL' 150.173 1 ? ? ? ? 5 water nat water 18.015 207 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GQDRSPIETQNVETVLRLFDEGWGAQDGWRDVWRET(MSE)TPGFRSIFHSNQAVEGIEQAIAFNAVLFEGFPRLEVVVE NVTVEGDNVVVQARLTGAQDGPFLGVPPSGQ(MSE)VDVPDVTLFTLADGQVIE(MSE)RYFTDLLAV(MSE)TAISAPP EN ; _entity_poly.pdbx_seq_one_letter_code_can ;GQDRSPIETQNVETVLRLFDEGWGAQDGWRDVWRETMTPGFRSIFHSNQAVEGIEQAIAFNAVLFEGFPRLEVVVENVTV EGDNVVVQARLTGAQDGPFLGVPPSGQMVDVPDVTLFTLADGQVIEMRYFTDLLAVMTAISAPPEN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 396293 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLN n 1 3 ASP n 1 4 ARG n 1 5 SER n 1 6 PRO n 1 7 ILE n 1 8 GLU n 1 9 THR n 1 10 GLN n 1 11 ASN n 1 12 VAL n 1 13 GLU n 1 14 THR n 1 15 VAL n 1 16 LEU n 1 17 ARG n 1 18 LEU n 1 19 PHE n 1 20 ASP n 1 21 GLU n 1 22 GLY n 1 23 TRP n 1 24 GLY n 1 25 ALA n 1 26 GLN n 1 27 ASP n 1 28 GLY n 1 29 TRP n 1 30 ARG n 1 31 ASP n 1 32 VAL n 1 33 TRP n 1 34 ARG n 1 35 GLU n 1 36 THR n 1 37 MSE n 1 38 THR n 1 39 PRO n 1 40 GLY n 1 41 PHE n 1 42 ARG n 1 43 SER n 1 44 ILE n 1 45 PHE n 1 46 HIS n 1 47 SER n 1 48 ASN n 1 49 GLN n 1 50 ALA n 1 51 VAL n 1 52 GLU n 1 53 GLY n 1 54 ILE n 1 55 GLU n 1 56 GLN n 1 57 ALA n 1 58 ILE n 1 59 ALA n 1 60 PHE n 1 61 ASN n 1 62 ALA n 1 63 VAL n 1 64 LEU n 1 65 PHE n 1 66 GLU n 1 67 GLY n 1 68 PHE n 1 69 PRO n 1 70 ARG n 1 71 LEU n 1 72 GLU n 1 73 VAL n 1 74 VAL n 1 75 VAL n 1 76 GLU n 1 77 ASN n 1 78 VAL n 1 79 THR n 1 80 VAL n 1 81 GLU n 1 82 GLY n 1 83 ASP n 1 84 ASN n 1 85 VAL n 1 86 VAL n 1 87 VAL n 1 88 GLN n 1 89 ALA n 1 90 ARG n 1 91 LEU n 1 92 THR n 1 93 GLY n 1 94 ALA n 1 95 GLN n 1 96 ASP n 1 97 GLY n 1 98 PRO n 1 99 PHE n 1 100 LEU n 1 101 GLY n 1 102 VAL n 1 103 PRO n 1 104 PRO n 1 105 SER n 1 106 GLY n 1 107 GLN n 1 108 MSE n 1 109 VAL n 1 110 ASP n 1 111 VAL n 1 112 PRO n 1 113 ASP n 1 114 VAL n 1 115 THR n 1 116 LEU n 1 117 PHE n 1 118 THR n 1 119 LEU n 1 120 ALA n 1 121 ASP n 1 122 GLY n 1 123 GLN n 1 124 VAL n 1 125 ILE n 1 126 GLU n 1 127 MSE n 1 128 ARG n 1 129 TYR n 1 130 PHE n 1 131 THR n 1 132 ASP n 1 133 LEU n 1 134 LEU n 1 135 ALA n 1 136 VAL n 1 137 MSE n 1 138 THR n 1 139 ALA n 1 140 ILE n 1 141 SER n 1 142 ALA n 1 143 PRO n 1 144 PRO n 1 145 GLU n 1 146 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Jann_1300 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain CCS1 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Jannaschia sp.' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 290400 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q28SU5_JANSC _struct_ref.pdbx_db_accession Q28SU5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QDRSPIETQNVETVLRLFDEGWGAQDGWRDVWRETMTPGFRSIFHSNQAVEGIEQAIAFNAVLFEGFPRLEVVVENVTVE GDNVVVQARLTGAQDGPFLGVPPSGQMVDVPDVTLFTLADGQVIEMRYFTDLLAVMTAISAPPEN ; _struct_ref.pdbx_align_begin 28 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3KKG _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 146 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q28SU5 _struct_ref_seq.db_align_beg 28 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 172 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 28 _struct_ref_seq.pdbx_auth_seq_align_end 172 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3KKG _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q28SU5 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PGE non-polymer . 'TRIETHYLENE GLYCOL' ? 'C6 H14 O4' 150.173 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3KKG # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.62 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 53.00 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '0.2000M CaCl2, 28.0000% PEG-400, 0.1M HEPES pH 7.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat collimating mirror, toroid focusing mirror' _diffrn_detector.pdbx_collection_date 2009-07-30 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91162 1.0 2 0.97925 1.0 3 0.97911 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength_list 0.91162,0.97925,0.97911 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3KKG _reflns.d_resolution_high 1.40 _reflns.d_resolution_low 29.210 _reflns.number_obs 34674 _reflns.pdbx_Rmerge_I_obs 0.069 _reflns.pdbx_netI_over_sigmaI 18.600 _reflns.pdbx_Rsym_value 0.069 _reflns.pdbx_redundancy 9.500 _reflns.percent_possible_obs 98.400 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.B_iso_Wilson_estimate 18.347 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.40 1.44 ? 24120 ? 0.988 0.8 0.988 ? 9.80 ? 2472 97.00 1 1 1.44 1.48 ? 23368 ? 0.760 1.0 0.760 ? 9.80 ? 2388 97.30 2 1 1.48 1.52 ? 22906 ? 0.552 1.4 0.552 ? 9.70 ? 2351 97.40 3 1 1.52 1.57 ? 22400 ? 0.433 1.8 0.433 ? 9.80 ? 2296 97.70 4 1 1.57 1.62 ? 21655 ? 0.340 2.3 0.340 ? 9.70 ? 2225 97.80 5 1 1.62 1.67 ? 21213 ? 0.273 2.8 0.273 ? 9.70 ? 2182 98.10 6 1 1.67 1.74 ? 20311 ? 0.218 3.5 0.218 ? 9.70 ? 2092 98.20 7 1 1.74 1.81 ? 19477 ? 0.172 4.4 0.172 ? 9.70 ? 2018 98.40 8 1 1.81 1.89 ? 19008 ? 0.133 5.6 0.133 ? 9.70 ? 1966 98.60 9 1 1.89 1.98 ? 18115 ? 0.105 6.8 0.105 ? 9.60 ? 1880 98.70 10 1 1.98 2.09 ? 17081 ? 0.091 7.5 0.091 ? 9.50 ? 1790 99.00 11 1 2.09 2.21 ? 16385 ? 0.082 8.3 0.082 ? 9.50 ? 1717 99.00 12 1 2.21 2.37 ? 15352 ? 0.074 9.1 0.074 ? 9.50 ? 1623 99.30 13 1 2.37 2.56 ? 14157 ? 0.068 9.8 0.068 ? 9.40 ? 1506 99.30 14 1 2.56 2.80 ? 13159 ? 0.060 11.1 0.060 ? 9.30 ? 1415 99.50 15 1 2.80 3.13 ? 11913 ? 0.056 11.5 0.056 ? 9.20 ? 1297 99.60 16 1 3.13 3.61 ? 10581 ? 0.049 13.0 0.049 ? 9.10 ? 1168 99.80 17 1 3.61 4.43 ? 8884 ? 0.046 13.9 0.046 ? 8.90 ? 1002 99.90 18 1 4.43 6.26 ? 6808 ? 0.040 14.7 0.040 ? 8.40 ? 812 99.80 19 1 6.26 29.21 ? 3502 ? 0.042 14.8 0.042 ? 7.40 ? 474 96.00 20 1 # _refine.entry_id 3KKG _refine.ls_d_res_high 1.400 _refine.ls_d_res_low 29.210 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 97.850 _refine.ls_number_reflns_obs 34674 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. PEG400 FRAGMENTS (PEG AND PGE) AND A CHLORIDE ION WERE MODELED BASED ON CRYSTALLIZATION CONDITIONS. 5. UNEXPLAINED ELECTRON DENSITY NEAR RESIDUE 34 WAS NOT MODELED. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.182 _refine.ls_R_factor_R_work 0.181 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.198 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 1739 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 23.155 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.160 _refine.aniso_B[2][2] -0.160 _refine.aniso_B[3][3] 0.250 _refine.aniso_B[1][2] -0.080 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.967 _refine.correlation_coeff_Fo_to_Fc_free 0.959 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.061 _refine.pdbx_overall_ESU_R_Free 0.060 _refine.overall_SU_ML 0.043 _refine.overall_SU_B 2.105 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 60.77 _refine.B_iso_min 11.37 _refine.occupancy_max 1.00 _refine.occupancy_min 0.22 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1114 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 25 _refine_hist.number_atoms_solvent 207 _refine_hist.number_atoms_total 1346 _refine_hist.d_res_high 1.400 _refine_hist.d_res_low 29.210 # loop_ _refine_ls_restr.type _refine_ls_restr.pdbx_refine_id _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 'X-RAY DIFFRACTION' 1282 0.017 0.022 ? ? r_bond_other_d 'X-RAY DIFFRACTION' 859 0.002 0.020 ? ? r_angle_refined_deg 'X-RAY DIFFRACTION' 1752 1.642 1.950 ? ? r_angle_other_deg 'X-RAY DIFFRACTION' 2096 0.984 3.000 ? ? r_dihedral_angle_1_deg 'X-RAY DIFFRACTION' 166 5.512 5.000 ? ? r_dihedral_angle_2_deg 'X-RAY DIFFRACTION' 64 38.678 24.688 ? ? r_dihedral_angle_3_deg 'X-RAY DIFFRACTION' 199 12.593 15.000 ? ? r_dihedral_angle_4_deg 'X-RAY DIFFRACTION' 10 17.631 15.000 ? ? r_chiral_restr 'X-RAY DIFFRACTION' 192 0.103 0.200 ? ? r_gen_planes_refined 'X-RAY DIFFRACTION' 1488 0.008 0.020 ? ? r_gen_planes_other 'X-RAY DIFFRACTION' 263 0.002 0.020 ? ? r_nbd_refined 'X-RAY DIFFRACTION' 259 0.225 0.200 ? ? r_nbd_other 'X-RAY DIFFRACTION' 940 0.201 0.200 ? ? r_nbtor_refined 'X-RAY DIFFRACTION' 635 0.182 0.200 ? ? r_nbtor_other 'X-RAY DIFFRACTION' 701 0.087 0.200 ? ? r_xyhbond_nbd_refined 'X-RAY DIFFRACTION' 159 0.189 0.200 ? ? r_symmetry_vdw_refined 'X-RAY DIFFRACTION' 15 0.176 0.200 ? ? r_symmetry_vdw_other 'X-RAY DIFFRACTION' 65 0.356 0.200 ? ? r_symmetry_hbond_refined 'X-RAY DIFFRACTION' 21 0.255 0.200 ? ? r_mcbond_it 'X-RAY DIFFRACTION' 937 1.893 3.000 ? ? r_mcbond_other 'X-RAY DIFFRACTION' 317 0.502 3.000 ? ? r_mcangle_it 'X-RAY DIFFRACTION' 1298 2.176 4.000 ? ? r_scbond_it 'X-RAY DIFFRACTION' 536 3.079 5.000 ? ? r_scangle_it 'X-RAY DIFFRACTION' 454 4.725 6.000 ? ? # _refine_ls_shell.d_res_high 1.400 _refine_ls_shell.d_res_low 1.436 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 96.450 _refine_ls_shell.number_reflns_R_work 2342 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.310 _refine_ls_shell.R_factor_R_free 0.413 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 129 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2471 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3KKG _struct.title 'Crystal structure of Putative SnoaL-like polyketide cyclase (YP_509242.1) from Jannaschia Sp. CCS1 at 1.40 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;Putative SnoaL-like polyketide cyclase, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, LYASE ; _struct_keywords.pdbx_keywords LYASE _struct_keywords.entry_id 3KKG # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 5 ? # _struct_biol.id 1 _struct_biol.details ;ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE ASSIGNMENT OF A DIMER AS A SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 5 ? ARG A 17 ? SER A 31 ARG A 43 1 ? 13 HELX_P HELX_P2 2 LEU A 18 ? ASP A 20 ? LEU A 44 ASP A 46 5 ? 3 HELX_P HELX_P3 3 GLY A 28 ? THR A 36 ? GLY A 54 THR A 62 1 ? 9 HELX_P HELX_P4 4 GLY A 53 ? PHE A 68 ? GLY A 79 PHE A 94 1 ? 16 HELX_P HELX_P5 5 ASP A 132 ? SER A 141 ? ASP A 158 SER A 167 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A THR 36 C ? ? ? 1_555 A MSE 37 N A ? A THR 62 A MSE 63 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale2 covale both ? A THR 36 C ? ? ? 1_555 A MSE 37 N B ? A THR 62 A MSE 63 1_555 ? ? ? ? ? ? ? 1.314 ? ? covale3 covale both ? A MSE 37 C A ? ? 1_555 A THR 38 N ? ? A MSE 63 A THR 64 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale4 covale both ? A MSE 37 C B ? ? 1_555 A THR 38 N ? ? A MSE 63 A THR 64 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale5 covale both ? A GLN 107 C A ? ? 1_555 A MSE 108 N A ? A GLN 133 A MSE 134 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale6 covale both ? A GLN 107 C B ? ? 1_555 A MSE 108 N B ? A GLN 133 A MSE 134 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale7 covale both ? A MSE 108 C A ? ? 1_555 A VAL 109 N ? ? A MSE 134 A VAL 135 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale8 covale both ? A MSE 108 C B ? ? 1_555 A VAL 109 N ? ? A MSE 134 A VAL 135 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale9 covale both ? A GLU 126 C ? ? ? 1_555 A MSE 127 N ? ? A GLU 152 A MSE 153 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale10 covale both ? A MSE 127 C ? ? ? 1_555 A ARG 128 N ? ? A MSE 153 A ARG 154 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale11 covale both ? A VAL 136 C ? ? ? 1_555 A MSE 137 N ? ? A VAL 162 A MSE 163 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale12 covale both ? A MSE 137 C ? ? ? 1_555 A THR 138 N ? ? A MSE 163 A THR 164 1_555 ? ? ? ? ? ? ? 1.329 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 51 ? GLU A 52 ? VAL A 77 GLU A 78 A 2 MSE A 37 ? PHE A 45 ? MSE A 63 PHE A 71 A 3 GLN A 123 ? THR A 131 ? GLN A 149 THR A 157 A 4 MSE A 108 ? ALA A 120 ? MSE A 134 ALA A 146 A 5 ASN A 84 ? ALA A 94 ? ASN A 110 ALA A 120 A 6 GLU A 72 ? GLU A 81 ? GLU A 98 GLU A 107 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 51 ? O VAL A 77 N SER A 43 ? N SER A 69 A 2 3 N ILE A 44 ? N ILE A 70 O MSE A 127 ? O MSE A 153 A 3 4 O ARG A 128 ? O ARG A 154 N LEU A 116 ? N LEU A 142 A 4 5 O PHE A 117 ? O PHE A 143 N VAL A 85 ? N VAL A 111 A 5 6 O GLN A 88 ? O GLN A 114 N GLU A 76 ? N GLU A 102 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CL 201 ? 4 'BINDING SITE FOR RESIDUE CL A 201' AC2 Software A PEG 202 ? 2 'BINDING SITE FOR RESIDUE PEG A 202' AC3 Software A PEG 203 ? 9 'BINDING SITE FOR RESIDUE PEG A 203' AC4 Software A PGE 204 ? 3 'BINDING SITE FOR RESIDUE PGE A 204' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 GLY A 28 ? GLY A 54 . ? 1_555 ? 2 AC1 4 TRP A 29 ? TRP A 55 . ? 1_555 ? 3 AC1 4 ARG A 30 ? ARG A 56 . ? 1_555 ? 4 AC1 4 HOH F . ? HOH A 516 . ? 1_555 ? 5 AC2 2 TYR A 129 ? TYR A 155 . ? 1_555 ? 6 AC2 2 HOH F . ? HOH A 440 . ? 1_555 ? 7 AC3 9 GLY A 1 ? GLY A 0 . ? 10_665 ? 8 AC3 9 GLN A 2 ? GLN A 28 . ? 10_665 ? 9 AC3 9 SER A 5 ? SER A 31 . ? 1_555 ? 10 AC3 9 GLU A 8 ? GLU A 34 . ? 1_555 ? 11 AC3 9 ARG A 70 ? ARG A 96 . ? 5_565 ? 12 AC3 9 GLY A 82 ? GLY A 108 . ? 1_555 ? 13 AC3 9 HOH F . ? HOH A 449 . ? 1_555 ? 14 AC3 9 HOH F . ? HOH A 475 . ? 1_555 ? 15 AC3 9 HOH F . ? HOH A 546 . ? 1_555 ? 16 AC4 3 ASN A 48 ? ASN A 74 . ? 1_555 ? 17 AC4 3 PHE A 60 ? PHE A 86 . ? 1_555 ? 18 AC4 3 LEU A 100 ? LEU A 126 . ? 1_555 ? # _atom_sites.entry_id 3KKG _atom_sites.fract_transf_matrix[1][1] 0.017533 _atom_sites.fract_transf_matrix[1][2] 0.010123 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020245 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005521 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 0 GLY GLY A . n A 1 2 GLN 2 28 28 GLN GLN A . n A 1 3 ASP 3 29 29 ASP ASP A . n A 1 4 ARG 4 30 30 ARG ARG A . n A 1 5 SER 5 31 31 SER SER A . n A 1 6 PRO 6 32 32 PRO PRO A . n A 1 7 ILE 7 33 33 ILE ILE A . n A 1 8 GLU 8 34 34 GLU GLU A . n A 1 9 THR 9 35 35 THR THR A . n A 1 10 GLN 10 36 36 GLN GLN A . n A 1 11 ASN 11 37 37 ASN ASN A . n A 1 12 VAL 12 38 38 VAL VAL A . n A 1 13 GLU 13 39 39 GLU GLU A . n A 1 14 THR 14 40 40 THR THR A . n A 1 15 VAL 15 41 41 VAL VAL A . n A 1 16 LEU 16 42 42 LEU LEU A . n A 1 17 ARG 17 43 43 ARG ARG A . n A 1 18 LEU 18 44 44 LEU LEU A . n A 1 19 PHE 19 45 45 PHE PHE A . n A 1 20 ASP 20 46 46 ASP ASP A . n A 1 21 GLU 21 47 47 GLU GLU A . n A 1 22 GLY 22 48 48 GLY GLY A . n A 1 23 TRP 23 49 49 TRP TRP A . n A 1 24 GLY 24 50 50 GLY GLY A . n A 1 25 ALA 25 51 51 ALA ALA A . n A 1 26 GLN 26 52 52 GLN GLN A . n A 1 27 ASP 27 53 53 ASP ASP A . n A 1 28 GLY 28 54 54 GLY GLY A . n A 1 29 TRP 29 55 55 TRP TRP A . n A 1 30 ARG 30 56 56 ARG ARG A . n A 1 31 ASP 31 57 57 ASP ASP A . n A 1 32 VAL 32 58 58 VAL VAL A . n A 1 33 TRP 33 59 59 TRP TRP A . n A 1 34 ARG 34 60 60 ARG ARG A . n A 1 35 GLU 35 61 61 GLU GLU A . n A 1 36 THR 36 62 62 THR THR A . n A 1 37 MSE 37 63 63 MSE MSE A . n A 1 38 THR 38 64 64 THR THR A . n A 1 39 PRO 39 65 65 PRO PRO A . n A 1 40 GLY 40 66 66 GLY GLY A . n A 1 41 PHE 41 67 67 PHE PHE A . n A 1 42 ARG 42 68 68 ARG ARG A . n A 1 43 SER 43 69 69 SER SER A . n A 1 44 ILE 44 70 70 ILE ILE A . n A 1 45 PHE 45 71 71 PHE PHE A . n A 1 46 HIS 46 72 72 HIS HIS A . n A 1 47 SER 47 73 73 SER SER A . n A 1 48 ASN 48 74 74 ASN ASN A . n A 1 49 GLN 49 75 75 GLN GLN A . n A 1 50 ALA 50 76 76 ALA ALA A . n A 1 51 VAL 51 77 77 VAL VAL A . n A 1 52 GLU 52 78 78 GLU GLU A . n A 1 53 GLY 53 79 79 GLY GLY A . n A 1 54 ILE 54 80 80 ILE ILE A . n A 1 55 GLU 55 81 81 GLU GLU A . n A 1 56 GLN 56 82 82 GLN GLN A . n A 1 57 ALA 57 83 83 ALA ALA A . n A 1 58 ILE 58 84 84 ILE ILE A . n A 1 59 ALA 59 85 85 ALA ALA A . n A 1 60 PHE 60 86 86 PHE PHE A . n A 1 61 ASN 61 87 87 ASN ASN A . n A 1 62 ALA 62 88 88 ALA ALA A . n A 1 63 VAL 63 89 89 VAL VAL A . n A 1 64 LEU 64 90 90 LEU LEU A . n A 1 65 PHE 65 91 91 PHE PHE A . n A 1 66 GLU 66 92 92 GLU GLU A . n A 1 67 GLY 67 93 93 GLY GLY A . n A 1 68 PHE 68 94 94 PHE PHE A . n A 1 69 PRO 69 95 95 PRO PRO A . n A 1 70 ARG 70 96 96 ARG ARG A . n A 1 71 LEU 71 97 97 LEU LEU A . n A 1 72 GLU 72 98 98 GLU GLU A . n A 1 73 VAL 73 99 99 VAL VAL A . n A 1 74 VAL 74 100 100 VAL VAL A . n A 1 75 VAL 75 101 101 VAL VAL A . n A 1 76 GLU 76 102 102 GLU GLU A . n A 1 77 ASN 77 103 103 ASN ASN A . n A 1 78 VAL 78 104 104 VAL VAL A . n A 1 79 THR 79 105 105 THR THR A . n A 1 80 VAL 80 106 106 VAL VAL A . n A 1 81 GLU 81 107 107 GLU GLU A . n A 1 82 GLY 82 108 108 GLY GLY A . n A 1 83 ASP 83 109 109 ASP ASP A . n A 1 84 ASN 84 110 110 ASN ASN A . n A 1 85 VAL 85 111 111 VAL VAL A . n A 1 86 VAL 86 112 112 VAL VAL A . n A 1 87 VAL 87 113 113 VAL VAL A . n A 1 88 GLN 88 114 114 GLN GLN A . n A 1 89 ALA 89 115 115 ALA ALA A . n A 1 90 ARG 90 116 116 ARG ARG A . n A 1 91 LEU 91 117 117 LEU LEU A . n A 1 92 THR 92 118 118 THR THR A . n A 1 93 GLY 93 119 119 GLY GLY A . n A 1 94 ALA 94 120 120 ALA ALA A . n A 1 95 GLN 95 121 121 GLN GLN A . n A 1 96 ASP 96 122 122 ASP ASP A . n A 1 97 GLY 97 123 123 GLY GLY A . n A 1 98 PRO 98 124 124 PRO PRO A . n A 1 99 PHE 99 125 125 PHE PHE A . n A 1 100 LEU 100 126 126 LEU LEU A . n A 1 101 GLY 101 127 127 GLY GLY A . n A 1 102 VAL 102 128 128 VAL VAL A . n A 1 103 PRO 103 129 129 PRO PRO A . n A 1 104 PRO 104 130 130 PRO PRO A . n A 1 105 SER 105 131 131 SER SER A . n A 1 106 GLY 106 132 132 GLY GLY A . n A 1 107 GLN 107 133 133 GLN GLN A . n A 1 108 MSE 108 134 134 MSE MSE A . n A 1 109 VAL 109 135 135 VAL VAL A . n A 1 110 ASP 110 136 136 ASP ASP A . n A 1 111 VAL 111 137 137 VAL VAL A . n A 1 112 PRO 112 138 138 PRO PRO A . n A 1 113 ASP 113 139 139 ASP ASP A . n A 1 114 VAL 114 140 140 VAL VAL A . n A 1 115 THR 115 141 141 THR THR A . n A 1 116 LEU 116 142 142 LEU LEU A . n A 1 117 PHE 117 143 143 PHE PHE A . n A 1 118 THR 118 144 144 THR THR A . n A 1 119 LEU 119 145 145 LEU LEU A . n A 1 120 ALA 120 146 146 ALA ALA A . n A 1 121 ASP 121 147 147 ASP ASP A . n A 1 122 GLY 122 148 148 GLY GLY A . n A 1 123 GLN 123 149 149 GLN GLN A . n A 1 124 VAL 124 150 150 VAL VAL A . n A 1 125 ILE 125 151 151 ILE ILE A . n A 1 126 GLU 126 152 152 GLU GLU A . n A 1 127 MSE 127 153 153 MSE MSE A . n A 1 128 ARG 128 154 154 ARG ARG A . n A 1 129 TYR 129 155 155 TYR TYR A . n A 1 130 PHE 130 156 156 PHE PHE A . n A 1 131 THR 131 157 157 THR THR A . n A 1 132 ASP 132 158 158 ASP ASP A . n A 1 133 LEU 133 159 159 LEU LEU A . n A 1 134 LEU 134 160 160 LEU LEU A . n A 1 135 ALA 135 161 161 ALA ALA A . n A 1 136 VAL 136 162 162 VAL VAL A . n A 1 137 MSE 137 163 163 MSE MSE A . n A 1 138 THR 138 164 164 THR THR A . n A 1 139 ALA 139 165 165 ALA ALA A . n A 1 140 ILE 140 166 166 ILE ILE A . n A 1 141 SER 141 167 167 SER SER A . n A 1 142 ALA 142 168 168 ALA ALA A . n A 1 143 PRO 143 169 169 PRO PRO A . n A 1 144 PRO 144 170 170 PRO PRO A . n A 1 145 GLU 145 171 ? ? ? A . n A 1 146 ASN 146 172 ? ? ? A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL 1 201 201 CL CL A . C 3 PEG 1 202 202 PEG PEG A . D 3 PEG 1 203 203 PEG PEG A . E 4 PGE 1 204 204 PGE PGE A . F 5 HOH 1 205 205 HOH HOH A . F 5 HOH 2 206 206 HOH HOH A . F 5 HOH 3 207 207 HOH HOH A . F 5 HOH 4 208 208 HOH HOH A . F 5 HOH 5 209 209 HOH HOH A . F 5 HOH 6 210 210 HOH HOH A . F 5 HOH 7 211 211 HOH HOH A . F 5 HOH 8 212 212 HOH HOH A . F 5 HOH 9 213 213 HOH HOH A . F 5 HOH 10 214 214 HOH HOH A . F 5 HOH 11 215 215 HOH HOH A . F 5 HOH 12 216 216 HOH HOH A . F 5 HOH 13 217 217 HOH HOH A . F 5 HOH 14 218 218 HOH HOH A . F 5 HOH 15 219 219 HOH HOH A . F 5 HOH 16 220 220 HOH HOH A . F 5 HOH 17 221 221 HOH HOH A . F 5 HOH 18 222 222 HOH HOH A . F 5 HOH 19 223 223 HOH HOH A . F 5 HOH 20 224 224 HOH HOH A . F 5 HOH 21 225 225 HOH HOH A . F 5 HOH 22 226 226 HOH HOH A . F 5 HOH 23 227 227 HOH HOH A . F 5 HOH 24 373 373 HOH HOH A . F 5 HOH 25 374 374 HOH HOH A . F 5 HOH 26 375 375 HOH HOH A . F 5 HOH 27 376 376 HOH HOH A . F 5 HOH 28 377 377 HOH HOH A . F 5 HOH 29 378 378 HOH HOH A . F 5 HOH 30 379 379 HOH HOH A . F 5 HOH 31 380 380 HOH HOH A . F 5 HOH 32 381 381 HOH HOH A . F 5 HOH 33 382 382 HOH HOH A . F 5 HOH 34 383 383 HOH HOH A . F 5 HOH 35 384 384 HOH HOH A . F 5 HOH 36 385 385 HOH HOH A . F 5 HOH 37 386 386 HOH HOH A . F 5 HOH 38 387 387 HOH HOH A . F 5 HOH 39 388 388 HOH HOH A . F 5 HOH 40 389 389 HOH HOH A . F 5 HOH 41 390 390 HOH HOH A . F 5 HOH 42 391 391 HOH HOH A . F 5 HOH 43 392 392 HOH HOH A . F 5 HOH 44 393 393 HOH HOH A . F 5 HOH 45 394 394 HOH HOH A . F 5 HOH 46 395 395 HOH HOH A . F 5 HOH 47 396 396 HOH HOH A . F 5 HOH 48 397 397 HOH HOH A . F 5 HOH 49 398 398 HOH HOH A . F 5 HOH 50 399 399 HOH HOH A . F 5 HOH 51 400 400 HOH HOH A . F 5 HOH 52 401 401 HOH HOH A . F 5 HOH 53 402 402 HOH HOH A . F 5 HOH 54 403 403 HOH HOH A . F 5 HOH 55 404 404 HOH HOH A . F 5 HOH 56 405 405 HOH HOH A . F 5 HOH 57 406 406 HOH HOH A . F 5 HOH 58 407 407 HOH HOH A . F 5 HOH 59 408 408 HOH HOH A . F 5 HOH 60 409 409 HOH HOH A . F 5 HOH 61 410 410 HOH HOH A . F 5 HOH 62 411 411 HOH HOH A . F 5 HOH 63 412 412 HOH HOH A . F 5 HOH 64 413 413 HOH HOH A . F 5 HOH 65 414 414 HOH HOH A . F 5 HOH 66 415 415 HOH HOH A . F 5 HOH 67 416 416 HOH HOH A . F 5 HOH 68 417 417 HOH HOH A . F 5 HOH 69 418 418 HOH HOH A . F 5 HOH 70 419 419 HOH HOH A . F 5 HOH 71 420 420 HOH HOH A . F 5 HOH 72 421 421 HOH HOH A . F 5 HOH 73 422 422 HOH HOH A . F 5 HOH 74 423 423 HOH HOH A . F 5 HOH 75 424 424 HOH HOH A . F 5 HOH 76 425 425 HOH HOH A . F 5 HOH 77 426 426 HOH HOH A . F 5 HOH 78 427 427 HOH HOH A . F 5 HOH 79 428 428 HOH HOH A . F 5 HOH 80 429 429 HOH HOH A . F 5 HOH 81 430 430 HOH HOH A . F 5 HOH 82 431 431 HOH HOH A . F 5 HOH 83 432 432 HOH HOH A . F 5 HOH 84 433 433 HOH HOH A . F 5 HOH 85 434 434 HOH HOH A . F 5 HOH 86 435 435 HOH HOH A . F 5 HOH 87 436 436 HOH HOH A . F 5 HOH 88 437 437 HOH HOH A . F 5 HOH 89 438 438 HOH HOH A . F 5 HOH 90 439 439 HOH HOH A . F 5 HOH 91 440 440 HOH HOH A . F 5 HOH 92 441 441 HOH HOH A . F 5 HOH 93 442 442 HOH HOH A . F 5 HOH 94 443 443 HOH HOH A . F 5 HOH 95 444 444 HOH HOH A . F 5 HOH 96 445 445 HOH HOH A . F 5 HOH 97 446 446 HOH HOH A . F 5 HOH 98 447 447 HOH HOH A . F 5 HOH 99 448 448 HOH HOH A . F 5 HOH 100 449 449 HOH HOH A . F 5 HOH 101 450 450 HOH HOH A . F 5 HOH 102 451 451 HOH HOH A . F 5 HOH 103 452 452 HOH HOH A . F 5 HOH 104 453 453 HOH HOH A . F 5 HOH 105 454 454 HOH HOH A . F 5 HOH 106 455 455 HOH HOH A . F 5 HOH 107 456 456 HOH HOH A . F 5 HOH 108 457 457 HOH HOH A . F 5 HOH 109 458 458 HOH HOH A . F 5 HOH 110 459 459 HOH HOH A . F 5 HOH 111 460 460 HOH HOH A . F 5 HOH 112 461 461 HOH HOH A . F 5 HOH 113 462 462 HOH HOH A . F 5 HOH 114 463 463 HOH HOH A . F 5 HOH 115 464 464 HOH HOH A . F 5 HOH 116 465 465 HOH HOH A . F 5 HOH 117 466 466 HOH HOH A . F 5 HOH 118 467 467 HOH HOH A . F 5 HOH 119 468 468 HOH HOH A . F 5 HOH 120 469 469 HOH HOH A . F 5 HOH 121 470 470 HOH HOH A . F 5 HOH 122 471 471 HOH HOH A . F 5 HOH 123 472 472 HOH HOH A . F 5 HOH 124 473 473 HOH HOH A . F 5 HOH 125 474 474 HOH HOH A . F 5 HOH 126 475 475 HOH HOH A . F 5 HOH 127 476 476 HOH HOH A . F 5 HOH 128 477 477 HOH HOH A . F 5 HOH 129 478 478 HOH HOH A . F 5 HOH 130 479 479 HOH HOH A . F 5 HOH 131 480 480 HOH HOH A . F 5 HOH 132 481 481 HOH HOH A . F 5 HOH 133 482 482 HOH HOH A . F 5 HOH 134 483 483 HOH HOH A . F 5 HOH 135 484 484 HOH HOH A . F 5 HOH 136 485 485 HOH HOH A . F 5 HOH 137 486 486 HOH HOH A . F 5 HOH 138 487 487 HOH HOH A . F 5 HOH 139 488 488 HOH HOH A . F 5 HOH 140 489 489 HOH HOH A . F 5 HOH 141 490 490 HOH HOH A . F 5 HOH 142 491 491 HOH HOH A . F 5 HOH 143 492 492 HOH HOH A . F 5 HOH 144 493 493 HOH HOH A . F 5 HOH 145 494 494 HOH HOH A . F 5 HOH 146 495 495 HOH HOH A . F 5 HOH 147 496 496 HOH HOH A . F 5 HOH 148 497 497 HOH HOH A . F 5 HOH 149 498 498 HOH HOH A . F 5 HOH 150 499 499 HOH HOH A . F 5 HOH 151 500 500 HOH HOH A . F 5 HOH 152 501 501 HOH HOH A . F 5 HOH 153 502 502 HOH HOH A . F 5 HOH 154 503 503 HOH HOH A . F 5 HOH 155 504 504 HOH HOH A . F 5 HOH 156 505 505 HOH HOH A . F 5 HOH 157 506 506 HOH HOH A . F 5 HOH 158 507 507 HOH HOH A . F 5 HOH 159 508 508 HOH HOH A . F 5 HOH 160 509 509 HOH HOH A . F 5 HOH 161 510 510 HOH HOH A . F 5 HOH 162 511 511 HOH HOH A . F 5 HOH 163 512 512 HOH HOH A . F 5 HOH 164 513 513 HOH HOH A . F 5 HOH 165 514 514 HOH HOH A . F 5 HOH 166 515 515 HOH HOH A . F 5 HOH 167 516 516 HOH HOH A . F 5 HOH 168 517 517 HOH HOH A . F 5 HOH 169 518 518 HOH HOH A . F 5 HOH 170 519 519 HOH HOH A . F 5 HOH 171 520 520 HOH HOH A . F 5 HOH 172 521 521 HOH HOH A . F 5 HOH 173 522 522 HOH HOH A . F 5 HOH 174 523 523 HOH HOH A . F 5 HOH 175 524 524 HOH HOH A . F 5 HOH 176 525 525 HOH HOH A . F 5 HOH 177 526 526 HOH HOH A . F 5 HOH 178 527 527 HOH HOH A . F 5 HOH 179 528 528 HOH HOH A . F 5 HOH 180 529 529 HOH HOH A . F 5 HOH 181 530 530 HOH HOH A . F 5 HOH 182 531 531 HOH HOH A . F 5 HOH 183 532 532 HOH HOH A . F 5 HOH 184 533 533 HOH HOH A . F 5 HOH 185 534 534 HOH HOH A . F 5 HOH 186 535 535 HOH HOH A . F 5 HOH 187 536 536 HOH HOH A . F 5 HOH 188 537 537 HOH HOH A . F 5 HOH 189 538 538 HOH HOH A . F 5 HOH 190 539 539 HOH HOH A . F 5 HOH 191 540 540 HOH HOH A . F 5 HOH 192 541 541 HOH HOH A . F 5 HOH 193 542 542 HOH HOH A . F 5 HOH 194 543 543 HOH HOH A . F 5 HOH 195 544 544 HOH HOH A . F 5 HOH 196 545 545 HOH HOH A . F 5 HOH 197 546 546 HOH HOH A . F 5 HOH 198 547 547 HOH HOH A . F 5 HOH 199 548 548 HOH HOH A . F 5 HOH 200 549 549 HOH HOH A . F 5 HOH 201 550 550 HOH HOH A . F 5 HOH 202 551 551 HOH HOH A . F 5 HOH 203 552 552 HOH HOH A . F 5 HOH 204 553 553 HOH HOH A . F 5 HOH 205 554 554 HOH HOH A . F 5 HOH 206 555 555 HOH HOH A . F 5 HOH 207 556 556 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 37 A MSE 63 ? MET SELENOMETHIONINE 2 A MSE 108 A MSE 134 ? MET SELENOMETHIONINE 3 A MSE 127 A MSE 153 ? MET SELENOMETHIONINE 4 A MSE 137 A MSE 163 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4340 ? 1 MORE -16 ? 1 'SSA (A^2)' 13600 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5000000000 -0.8660254038 0.0000000000 28.5180000000 -0.8660254038 -0.5000000000 0.0000000000 49.3946249302 0.0000000000 0.0000000000 -1.0000000000 30.1900000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 205 ? F HOH . 2 1 A HOH 210 ? F HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-12-01 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-17 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Source and taxonomy' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' 'Author supporting evidence' 5 3 'Structure model' 'Refinement description' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' 'Refinement description' 9 5 'Structure model' 'Database references' 10 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_struct_assembly_auth_evidence 2 3 'Structure model' software 3 4 'Structure model' software 4 4 'Structure model' struct_conn 5 5 'Structure model' database_2 6 5 'Structure model' struct_ref_seq_dif 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 5 'Structure model' '_database_2.pdbx_DOI' 12 5 'Structure model' '_database_2.pdbx_database_accession' 13 5 'Structure model' '_struct_ref_seq_dif.details' 14 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 15 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 16 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 26.1092 _pdbx_refine_tls.origin_y 28.7992 _pdbx_refine_tls.origin_z 8.3087 _pdbx_refine_tls.T[1][1] -0.0879 _pdbx_refine_tls.T[2][2] -0.0274 _pdbx_refine_tls.T[3][3] -0.0262 _pdbx_refine_tls.T[1][2] -0.0297 _pdbx_refine_tls.T[1][3] -0.0339 _pdbx_refine_tls.T[2][3] 0.0716 _pdbx_refine_tls.L[1][1] 2.6320 _pdbx_refine_tls.L[2][2] 0.6949 _pdbx_refine_tls.L[3][3] 1.3763 _pdbx_refine_tls.L[1][2] -0.9611 _pdbx_refine_tls.L[1][3] -0.6537 _pdbx_refine_tls.L[2][3] -0.0449 _pdbx_refine_tls.S[1][1] -0.0541 _pdbx_refine_tls.S[2][2] -0.0598 _pdbx_refine_tls.S[3][3] 0.1139 _pdbx_refine_tls.S[1][2] 0.3365 _pdbx_refine_tls.S[1][3] 0.4277 _pdbx_refine_tls.S[2][3] -0.1947 _pdbx_refine_tls.S[2][1] 0.0849 _pdbx_refine_tls.S[3][1] -0.1154 _pdbx_refine_tls.S[3][2] 0.0185 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 0 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 170 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 SCALA 3.2.5 5/04/2004 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 7 SHARP . ? ? ? ? phasing ? ? ? 8 # _pdbx_entry_details.entry_id 3KKG _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT (28-172) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 46 ? ? -130.28 -95.47 2 1 HIS A 72 ? ? 54.89 -129.90 3 1 THR A 157 ? ? -128.92 -168.00 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 171 ? A GLU 145 2 1 Y 1 A ASN 172 ? A ASN 146 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 'DI(HYDROXYETHYL)ETHER' PEG 4 'TRIETHYLENE GLYCOL' PGE 5 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #