data_3KKN # _entry.id 3KKN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3KKN pdb_00003kkn 10.2210/pdb3kkn/pdb RCSB RCSB056110 ? ? WWPDB D_1000056110 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1X1S . unspecified PDB 1X1R . unspecified PDB 3KKM . unspecified PDB 3KKO . unspecified PDB 3KKP . unspecified PDB 3KKQ . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3KKN _pdbx_database_status.recvd_initial_deposition_date 2009-11-06 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Muraoka, S.' 1 'Shima, F.' 2 'Liao, J.' 3 'Ijiri, Y.' 4 'Matsumoto, K.' 5 'Ye, M.' 6 'Inoue, T.' 7 'Kataoka, T.' 8 # _citation.id primary _citation.title 'Structural basis for conformational dynamics of GTP-bound Ras protein' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 285 _citation.page_first 22696 _citation.page_last 22705 _citation.year 2010 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20479006 _citation.pdbx_database_id_DOI 10.1074/jbc.M110.125161 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Shima, F.' 1 ? primary 'Ijiri, Y.' 2 ? primary 'Muraoka, S.' 3 ? primary 'Liao, J.' 4 ? primary 'Ye, M.' 5 ? primary 'Araki, M.' 6 ? primary 'Matsumoto, K.' 7 ? primary 'Yamamoto, N.' 8 ? primary 'Sugimoto, T.' 9 ? primary 'Yoshikawa, Y.' 10 ? primary 'Kumasaka, T.' 11 ? primary 'Yamamoto, M.' 12 ? primary 'Tamura, A.' 13 ? primary 'Kataoka, T.' 14 ? # _cell.entry_id 3KKN _cell.length_a 34.583 _cell.length_b 82.000 _cell.length_c 121.998 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3KKN _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'GTPase HRas' 19387.707 1 ? T35S 'G domain, UNP residues 1-166' ? 2 non-polymer syn 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 522.196 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 water nat water 18.015 66 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Transforming protein p21, p21ras, H-Ras-1, c-H-ras, Ha-Ras, GTPase HRas, N-terminally processed' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPLGSDMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVED AFYTLVREIRQH ; _entity_poly.pdbx_seq_one_letter_code_can ;GPLGSDMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVED AFYTLVREIRQH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 LEU n 1 4 GLY n 1 5 SER n 1 6 ASP n 1 7 MET n 1 8 THR n 1 9 GLU n 1 10 TYR n 1 11 LYS n 1 12 LEU n 1 13 VAL n 1 14 VAL n 1 15 VAL n 1 16 GLY n 1 17 ALA n 1 18 GLY n 1 19 GLY n 1 20 VAL n 1 21 GLY n 1 22 LYS n 1 23 SER n 1 24 ALA n 1 25 LEU n 1 26 THR n 1 27 ILE n 1 28 GLN n 1 29 LEU n 1 30 ILE n 1 31 GLN n 1 32 ASN n 1 33 HIS n 1 34 PHE n 1 35 VAL n 1 36 ASP n 1 37 GLU n 1 38 TYR n 1 39 ASP n 1 40 PRO n 1 41 SER n 1 42 ILE n 1 43 GLU n 1 44 ASP n 1 45 SER n 1 46 TYR n 1 47 ARG n 1 48 LYS n 1 49 GLN n 1 50 VAL n 1 51 VAL n 1 52 ILE n 1 53 ASP n 1 54 GLY n 1 55 GLU n 1 56 THR n 1 57 CYS n 1 58 LEU n 1 59 LEU n 1 60 ASP n 1 61 ILE n 1 62 LEU n 1 63 ASP n 1 64 THR n 1 65 ALA n 1 66 GLY n 1 67 GLN n 1 68 GLU n 1 69 GLU n 1 70 TYR n 1 71 SER n 1 72 ALA n 1 73 MET n 1 74 ARG n 1 75 ASP n 1 76 GLN n 1 77 TYR n 1 78 MET n 1 79 ARG n 1 80 THR n 1 81 GLY n 1 82 GLU n 1 83 GLY n 1 84 PHE n 1 85 LEU n 1 86 CYS n 1 87 VAL n 1 88 PHE n 1 89 ALA n 1 90 ILE n 1 91 ASN n 1 92 ASN n 1 93 THR n 1 94 LYS n 1 95 SER n 1 96 PHE n 1 97 GLU n 1 98 ASP n 1 99 ILE n 1 100 HIS n 1 101 GLN n 1 102 TYR n 1 103 ARG n 1 104 GLU n 1 105 GLN n 1 106 ILE n 1 107 LYS n 1 108 ARG n 1 109 VAL n 1 110 LYS n 1 111 ASP n 1 112 SER n 1 113 ASP n 1 114 ASP n 1 115 VAL n 1 116 PRO n 1 117 MET n 1 118 VAL n 1 119 LEU n 1 120 VAL n 1 121 GLY n 1 122 ASN n 1 123 LYS n 1 124 CYS n 1 125 ASP n 1 126 LEU n 1 127 ALA n 1 128 ALA n 1 129 ARG n 1 130 THR n 1 131 VAL n 1 132 GLU n 1 133 SER n 1 134 ARG n 1 135 GLN n 1 136 ALA n 1 137 GLN n 1 138 ASP n 1 139 LEU n 1 140 ALA n 1 141 ARG n 1 142 SER n 1 143 TYR n 1 144 GLY n 1 145 ILE n 1 146 PRO n 1 147 TYR n 1 148 ILE n 1 149 GLU n 1 150 THR n 1 151 SER n 1 152 ALA n 1 153 LYS n 1 154 THR n 1 155 ARG n 1 156 GLN n 1 157 GLY n 1 158 VAL n 1 159 GLU n 1 160 ASP n 1 161 ALA n 1 162 PHE n 1 163 TYR n 1 164 THR n 1 165 LEU n 1 166 VAL n 1 167 ARG n 1 168 GLU n 1 169 ILE n 1 170 ARG n 1 171 GLN n 1 172 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain AG-1 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGEX-6P-1 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RASH_HUMAN _struct_ref.pdbx_db_accession P01112 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV REIRQH ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3KKN _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 7 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 172 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P01112 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 166 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 166 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3KKN GLY A 1 ? UNP P01112 ? ? 'expression tag' -5 1 1 3KKN PRO A 2 ? UNP P01112 ? ? 'expression tag' -4 2 1 3KKN LEU A 3 ? UNP P01112 ? ? 'expression tag' -3 3 1 3KKN GLY A 4 ? UNP P01112 ? ? 'expression tag' -2 4 1 3KKN SER A 5 ? UNP P01112 ? ? 'expression tag' -1 5 1 3KKN ASP A 6 ? UNP P01112 ? ? 'expression tag' 0 6 1 3KKN SER A 41 ? UNP P01112 THR 35 'engineered mutation' 35 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GNP non-polymer . 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' ? 'C10 H17 N6 O13 P3' 522.196 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3KKN _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.23 _exptl_crystal.density_percent_sol 44.86 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details 'MES, Ammonium Sulfate, PEG-MME-5000, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2009-05-23 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL38B1' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL38B1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 3KKN _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 26.67 _reflns.d_resolution_high 2.09 _reflns.number_obs 10645 _reflns.number_all 10645 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.088 _reflns.pdbx_Rsym_value 0.088 _reflns.pdbx_netI_over_sigmaI 45.4 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 14.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.10 _reflns_shell.d_res_low 2.18 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.282 _reflns_shell.pdbx_Rsym_value 0.282 _reflns_shell.meanI_over_sigI_obs 14.7 _reflns_shell.pdbx_redundancy 14.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1050 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3KKN _refine.ls_number_reflns_obs 10128 _refine.ls_number_reflns_all 10128 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 26.67 _refine.ls_d_res_high 2.09 _refine.ls_percent_reflns_obs 99.83 _refine.ls_R_factor_obs 0.19552 _refine.ls_R_factor_all 0.19552 _refine.ls_R_factor_R_work 0.19315 _refine.ls_R_factor_R_free 0.24230 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 508 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.934 _refine.correlation_coeff_Fo_to_Fc_free 0.907 _refine.B_iso_mean 16.804 _refine.aniso_B[1][1] -0.01 _refine.aniso_B[2][2] 0.02 _refine.aniso_B[3][3] -0.01 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 5P21' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.242 _refine.pdbx_overall_ESU_R_Free 0.197 _refine.overall_SU_ML 0.126 _refine.overall_SU_B 4.534 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1322 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 33 _refine_hist.number_atoms_solvent 66 _refine_hist.number_atoms_total 1421 _refine_hist.d_res_high 2.09 _refine_hist.d_res_low 26.67 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.011 0.022 ? 1430 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.171 1.982 ? 1942 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.007 5.000 ? 174 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.544 24.054 ? 74 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.723 15.000 ? 254 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 15.874 15.000 ? 13 'X-RAY DIFFRACTION' ? r_chiral_restr 0.075 0.200 ? 211 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 1092 'X-RAY DIFFRACTION' ? r_mcbond_it 0.654 1.500 ? 851 'X-RAY DIFFRACTION' ? r_mcangle_it 1.276 2.000 ? 1380 'X-RAY DIFFRACTION' ? r_scbond_it 1.876 3.000 ? 579 'X-RAY DIFFRACTION' ? r_scangle_it 3.240 4.500 ? 562 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.092 _refine_ls_shell.d_res_low 2.147 _refine_ls_shell.number_reflns_R_work 716 _refine_ls_shell.R_factor_R_work 0.175 _refine_ls_shell.percent_reflns_obs 98.45 _refine_ls_shell.R_factor_R_free 0.240 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 46 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 716 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3KKN _struct.title 'Crystal structure of H-Ras T35S in complex with GppNHp' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3KKN _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text 'GTP-binding, GTPase, SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details 'AUTHOR DETERMINED BIOLOGICAL UNIT: UNKNOWN' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 21 ? GLN A 31 ? GLY A 15 GLN A 25 1 ? 11 HELX_P HELX_P2 2 MET A 73 ? GLY A 81 ? MET A 67 GLY A 75 1 ? 9 HELX_P HELX_P3 3 ASN A 92 ? ASP A 98 ? ASN A 86 ASP A 92 1 ? 7 HELX_P HELX_P4 4 ASP A 98 ? ASP A 111 ? ASP A 92 ASP A 105 1 ? 14 HELX_P HELX_P5 5 GLU A 132 ? GLY A 144 ? GLU A 126 GLY A 138 1 ? 13 HELX_P HELX_P6 6 GLY A 157 ? GLN A 171 ? GLY A 151 GLN A 165 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A SER 23 OG ? ? ? 1_555 C MG . MG ? ? A SER 17 A MG 168 1_555 ? ? ? ? ? ? ? 2.153 ? ? metalc2 metalc ? ? B GNP . O2G ? ? ? 1_555 C MG . MG ? ? A GNP 167 A MG 168 1_555 ? ? ? ? ? ? ? 1.840 ? ? metalc3 metalc ? ? B GNP . O2B ? ? ? 1_555 C MG . MG ? ? A GNP 167 A MG 168 1_555 ? ? ? ? ? ? ? 2.143 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 168 A HOH 1001 1_555 ? ? ? ? ? ? ? 2.040 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 168 A HOH 1002 1_555 ? ? ? ? ? ? ? 2.234 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 168 A HOH 1003 1_555 ? ? ? ? ? ? ? 2.107 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASP A 44 ? ILE A 52 ? ASP A 38 ILE A 46 A 2 GLU A 55 ? ASP A 63 ? GLU A 49 ASP A 57 A 3 THR A 8 ? VAL A 15 ? THR A 2 VAL A 9 A 4 GLY A 83 ? ALA A 89 ? GLY A 77 ALA A 83 A 5 MET A 117 ? ASN A 122 ? MET A 111 ASN A 116 A 6 TYR A 147 ? GLU A 149 ? TYR A 141 GLU A 143 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 50 ? N VAL A 44 O CYS A 57 ? O CYS A 51 A 2 3 O ASP A 60 ? O ASP A 54 N TYR A 10 ? N TYR A 4 A 3 4 N VAL A 15 ? N VAL A 9 O LEU A 85 ? O LEU A 79 A 4 5 N PHE A 88 ? N PHE A 82 O ASN A 122 ? O ASN A 116 A 5 6 N LEU A 119 ? N LEU A 113 O ILE A 148 ? O ILE A 142 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GNP 167 ? 20 'BINDING SITE FOR RESIDUE GNP A 167' AC2 Software A MG 168 ? 5 'BINDING SITE FOR RESIDUE MG A 168' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 20 GLY A 18 ? GLY A 12 . ? 1_555 ? 2 AC1 20 GLY A 19 ? GLY A 13 . ? 1_555 ? 3 AC1 20 VAL A 20 ? VAL A 14 . ? 1_555 ? 4 AC1 20 GLY A 21 ? GLY A 15 . ? 1_555 ? 5 AC1 20 LYS A 22 ? LYS A 16 . ? 1_555 ? 6 AC1 20 SER A 23 ? SER A 17 . ? 1_555 ? 7 AC1 20 ALA A 24 ? ALA A 18 . ? 1_555 ? 8 AC1 20 ASN A 122 ? ASN A 116 . ? 1_555 ? 9 AC1 20 LYS A 123 ? LYS A 117 . ? 1_555 ? 10 AC1 20 ASP A 125 ? ASP A 119 . ? 1_555 ? 11 AC1 20 LEU A 126 ? LEU A 120 . ? 1_555 ? 12 AC1 20 SER A 151 ? SER A 145 . ? 1_555 ? 13 AC1 20 ALA A 152 ? ALA A 146 . ? 1_555 ? 14 AC1 20 LYS A 153 ? LYS A 147 . ? 1_555 ? 15 AC1 20 MG C . ? MG A 168 . ? 1_555 ? 16 AC1 20 HOH D . ? HOH A 1001 . ? 1_555 ? 17 AC1 20 HOH D . ? HOH A 1002 . ? 1_555 ? 18 AC1 20 HOH D . ? HOH A 1003 . ? 1_555 ? 19 AC1 20 HOH D . ? HOH A 1017 . ? 1_555 ? 20 AC1 20 HOH D . ? HOH A 1036 . ? 1_555 ? 21 AC2 5 SER A 23 ? SER A 17 . ? 1_555 ? 22 AC2 5 GNP B . ? GNP A 167 . ? 1_555 ? 23 AC2 5 HOH D . ? HOH A 1001 . ? 1_555 ? 24 AC2 5 HOH D . ? HOH A 1002 . ? 1_555 ? 25 AC2 5 HOH D . ? HOH A 1003 . ? 1_555 ? # _database_PDB_matrix.entry_id 3KKN _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3KKN _atom_sites.fract_transf_matrix[1][1] 0.028916 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012195 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008197 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -5 ? ? ? A . n A 1 2 PRO 2 -4 ? ? ? A . n A 1 3 LEU 3 -3 ? ? ? A . n A 1 4 GLY 4 -2 ? ? ? A . n A 1 5 SER 5 -1 ? ? ? A . n A 1 6 ASP 6 0 ? ? ? A . n A 1 7 MET 7 1 1 MET MET A . n A 1 8 THR 8 2 2 THR THR A . n A 1 9 GLU 9 3 3 GLU GLU A . n A 1 10 TYR 10 4 4 TYR TYR A . n A 1 11 LYS 11 5 5 LYS LYS A . n A 1 12 LEU 12 6 6 LEU LEU A . n A 1 13 VAL 13 7 7 VAL VAL A . n A 1 14 VAL 14 8 8 VAL VAL A . n A 1 15 VAL 15 9 9 VAL VAL A . n A 1 16 GLY 16 10 10 GLY GLY A . n A 1 17 ALA 17 11 11 ALA ALA A . n A 1 18 GLY 18 12 12 GLY GLY A . n A 1 19 GLY 19 13 13 GLY GLY A . n A 1 20 VAL 20 14 14 VAL VAL A . n A 1 21 GLY 21 15 15 GLY GLY A . n A 1 22 LYS 22 16 16 LYS LYS A . n A 1 23 SER 23 17 17 SER SER A . n A 1 24 ALA 24 18 18 ALA ALA A . n A 1 25 LEU 25 19 19 LEU LEU A . n A 1 26 THR 26 20 20 THR THR A . n A 1 27 ILE 27 21 21 ILE ILE A . n A 1 28 GLN 28 22 22 GLN GLN A . n A 1 29 LEU 29 23 23 LEU LEU A . n A 1 30 ILE 30 24 24 ILE ILE A . n A 1 31 GLN 31 25 25 GLN GLN A . n A 1 32 ASN 32 26 26 ASN ASN A . n A 1 33 HIS 33 27 27 HIS HIS A . n A 1 34 PHE 34 28 28 PHE PHE A . n A 1 35 VAL 35 29 29 VAL VAL A . n A 1 36 ASP 36 30 30 ASP ASP A . n A 1 37 GLU 37 31 31 GLU GLU A . n A 1 38 TYR 38 32 32 TYR TYR A . n A 1 39 ASP 39 33 33 ASP ASP A . n A 1 40 PRO 40 34 34 PRO PRO A . n A 1 41 SER 41 35 35 SER SER A . n A 1 42 ILE 42 36 36 ILE ILE A . n A 1 43 GLU 43 37 37 GLU GLU A . n A 1 44 ASP 44 38 38 ASP ASP A . n A 1 45 SER 45 39 39 SER SER A . n A 1 46 TYR 46 40 40 TYR TYR A . n A 1 47 ARG 47 41 41 ARG ARG A . n A 1 48 LYS 48 42 42 LYS LYS A . n A 1 49 GLN 49 43 43 GLN GLN A . n A 1 50 VAL 50 44 44 VAL VAL A . n A 1 51 VAL 51 45 45 VAL VAL A . n A 1 52 ILE 52 46 46 ILE ILE A . n A 1 53 ASP 53 47 47 ASP ASP A . n A 1 54 GLY 54 48 48 GLY GLY A . n A 1 55 GLU 55 49 49 GLU GLU A . n A 1 56 THR 56 50 50 THR THR A . n A 1 57 CYS 57 51 51 CYS CYS A . n A 1 58 LEU 58 52 52 LEU LEU A . n A 1 59 LEU 59 53 53 LEU LEU A . n A 1 60 ASP 60 54 54 ASP ASP A . n A 1 61 ILE 61 55 55 ILE ILE A . n A 1 62 LEU 62 56 56 LEU LEU A . n A 1 63 ASP 63 57 57 ASP ASP A . n A 1 64 THR 64 58 58 THR THR A . n A 1 65 ALA 65 59 59 ALA ALA A . n A 1 66 GLY 66 60 60 GLY GLY A . n A 1 67 GLN 67 61 61 GLN GLN A . n A 1 68 GLU 68 62 62 GLU GLU A . n A 1 69 GLU 69 63 63 GLU GLU A . n A 1 70 TYR 70 64 64 TYR TYR A . n A 1 71 SER 71 65 65 SER SER A . n A 1 72 ALA 72 66 66 ALA ALA A . n A 1 73 MET 73 67 67 MET MET A . n A 1 74 ARG 74 68 68 ARG ARG A . n A 1 75 ASP 75 69 69 ASP ASP A . n A 1 76 GLN 76 70 70 GLN GLN A . n A 1 77 TYR 77 71 71 TYR TYR A . n A 1 78 MET 78 72 72 MET MET A . n A 1 79 ARG 79 73 73 ARG ARG A . n A 1 80 THR 80 74 74 THR THR A . n A 1 81 GLY 81 75 75 GLY GLY A . n A 1 82 GLU 82 76 76 GLU GLU A . n A 1 83 GLY 83 77 77 GLY GLY A . n A 1 84 PHE 84 78 78 PHE PHE A . n A 1 85 LEU 85 79 79 LEU LEU A . n A 1 86 CYS 86 80 80 CYS CYS A . n A 1 87 VAL 87 81 81 VAL VAL A . n A 1 88 PHE 88 82 82 PHE PHE A . n A 1 89 ALA 89 83 83 ALA ALA A . n A 1 90 ILE 90 84 84 ILE ILE A . n A 1 91 ASN 91 85 85 ASN ASN A . n A 1 92 ASN 92 86 86 ASN ASN A . n A 1 93 THR 93 87 87 THR THR A . n A 1 94 LYS 94 88 88 LYS LYS A . n A 1 95 SER 95 89 89 SER SER A . n A 1 96 PHE 96 90 90 PHE PHE A . n A 1 97 GLU 97 91 91 GLU GLU A . n A 1 98 ASP 98 92 92 ASP ASP A . n A 1 99 ILE 99 93 93 ILE ILE A . n A 1 100 HIS 100 94 94 HIS HIS A . n A 1 101 GLN 101 95 95 GLN GLN A . n A 1 102 TYR 102 96 96 TYR TYR A . n A 1 103 ARG 103 97 97 ARG ARG A . n A 1 104 GLU 104 98 98 GLU GLU A . n A 1 105 GLN 105 99 99 GLN GLN A . n A 1 106 ILE 106 100 100 ILE ILE A . n A 1 107 LYS 107 101 101 LYS LYS A . n A 1 108 ARG 108 102 102 ARG ARG A . n A 1 109 VAL 109 103 103 VAL VAL A . n A 1 110 LYS 110 104 104 LYS LYS A . n A 1 111 ASP 111 105 105 ASP ASP A . n A 1 112 SER 112 106 106 SER SER A . n A 1 113 ASP 113 107 107 ASP ASP A . n A 1 114 ASP 114 108 108 ASP ASP A . n A 1 115 VAL 115 109 109 VAL VAL A . n A 1 116 PRO 116 110 110 PRO PRO A . n A 1 117 MET 117 111 111 MET MET A . n A 1 118 VAL 118 112 112 VAL VAL A . n A 1 119 LEU 119 113 113 LEU LEU A . n A 1 120 VAL 120 114 114 VAL VAL A . n A 1 121 GLY 121 115 115 GLY GLY A . n A 1 122 ASN 122 116 116 ASN ASN A . n A 1 123 LYS 123 117 117 LYS LYS A . n A 1 124 CYS 124 118 118 CYS CYS A . n A 1 125 ASP 125 119 119 ASP ASP A . n A 1 126 LEU 126 120 120 LEU LEU A . n A 1 127 ALA 127 121 121 ALA ALA A . n A 1 128 ALA 128 122 122 ALA ALA A . n A 1 129 ARG 129 123 123 ARG ARG A . n A 1 130 THR 130 124 124 THR THR A . n A 1 131 VAL 131 125 125 VAL VAL A . n A 1 132 GLU 132 126 126 GLU GLU A . n A 1 133 SER 133 127 127 SER SER A . n A 1 134 ARG 134 128 128 ARG ARG A . n A 1 135 GLN 135 129 129 GLN GLN A . n A 1 136 ALA 136 130 130 ALA ALA A . n A 1 137 GLN 137 131 131 GLN GLN A . n A 1 138 ASP 138 132 132 ASP ASP A . n A 1 139 LEU 139 133 133 LEU LEU A . n A 1 140 ALA 140 134 134 ALA ALA A . n A 1 141 ARG 141 135 135 ARG ARG A . n A 1 142 SER 142 136 136 SER SER A . n A 1 143 TYR 143 137 137 TYR TYR A . n A 1 144 GLY 144 138 138 GLY GLY A . n A 1 145 ILE 145 139 139 ILE ILE A . n A 1 146 PRO 146 140 140 PRO PRO A . n A 1 147 TYR 147 141 141 TYR TYR A . n A 1 148 ILE 148 142 142 ILE ILE A . n A 1 149 GLU 149 143 143 GLU GLU A . n A 1 150 THR 150 144 144 THR THR A . n A 1 151 SER 151 145 145 SER SER A . n A 1 152 ALA 152 146 146 ALA ALA A . n A 1 153 LYS 153 147 147 LYS LYS A . n A 1 154 THR 154 148 148 THR THR A . n A 1 155 ARG 155 149 149 ARG ARG A . n A 1 156 GLN 156 150 150 GLN GLN A . n A 1 157 GLY 157 151 151 GLY GLY A . n A 1 158 VAL 158 152 152 VAL VAL A . n A 1 159 GLU 159 153 153 GLU GLU A . n A 1 160 ASP 160 154 154 ASP ASP A . n A 1 161 ALA 161 155 155 ALA ALA A . n A 1 162 PHE 162 156 156 PHE PHE A . n A 1 163 TYR 163 157 157 TYR TYR A . n A 1 164 THR 164 158 158 THR THR A . n A 1 165 LEU 165 159 159 LEU LEU A . n A 1 166 VAL 166 160 160 VAL VAL A . n A 1 167 ARG 167 161 161 ARG ARG A . n A 1 168 GLU 168 162 162 GLU GLU A . n A 1 169 ILE 169 163 163 ILE ILE A . n A 1 170 ARG 170 164 164 ARG ARG A . n A 1 171 GLN 171 165 165 GLN GLN A . n A 1 172 HIS 172 166 166 HIS HIS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GNP 1 167 167 GNP GNP A . C 3 MG 1 168 168 MG MG A . D 4 HOH 1 1001 2001 HOH HOH A . D 4 HOH 2 1002 2002 HOH HOH A . D 4 HOH 3 1003 2003 HOH HOH A . D 4 HOH 4 1004 2004 HOH HOH A . D 4 HOH 5 1005 2005 HOH HOH A . D 4 HOH 6 1006 2006 HOH HOH A . D 4 HOH 7 1007 2007 HOH HOH A . D 4 HOH 8 1008 2008 HOH HOH A . D 4 HOH 9 1009 2009 HOH HOH A . D 4 HOH 10 1010 2010 HOH HOH A . D 4 HOH 11 1011 2011 HOH HOH A . D 4 HOH 12 1012 2012 HOH HOH A . D 4 HOH 13 1013 2013 HOH HOH A . D 4 HOH 14 1014 2014 HOH HOH A . D 4 HOH 15 1015 2015 HOH HOH A . D 4 HOH 16 1016 2016 HOH HOH A . D 4 HOH 17 1017 2017 HOH HOH A . D 4 HOH 18 1018 2018 HOH HOH A . D 4 HOH 19 1019 2019 HOH HOH A . D 4 HOH 20 1020 2020 HOH HOH A . D 4 HOH 21 1021 2021 HOH HOH A . D 4 HOH 22 1022 2022 HOH HOH A . D 4 HOH 23 1023 2023 HOH HOH A . D 4 HOH 24 1024 2024 HOH HOH A . D 4 HOH 25 1025 2025 HOH HOH A . D 4 HOH 26 1026 2026 HOH HOH A . D 4 HOH 27 1027 2027 HOH HOH A . D 4 HOH 28 1028 2028 HOH HOH A . D 4 HOH 29 1029 2029 HOH HOH A . D 4 HOH 30 1030 2030 HOH HOH A . D 4 HOH 31 1031 2031 HOH HOH A . D 4 HOH 32 1032 2032 HOH HOH A . D 4 HOH 33 1033 2033 HOH HOH A . D 4 HOH 34 1034 2034 HOH HOH A . D 4 HOH 35 1035 2035 HOH HOH A . D 4 HOH 36 1036 2036 HOH HOH A . D 4 HOH 37 1037 2037 HOH HOH A . D 4 HOH 38 1038 2038 HOH HOH A . D 4 HOH 39 1039 2039 HOH HOH A . D 4 HOH 40 1040 2040 HOH HOH A . D 4 HOH 41 1041 2041 HOH HOH A . D 4 HOH 42 1042 2042 HOH HOH A . D 4 HOH 43 1043 2043 HOH HOH A . D 4 HOH 44 1044 2044 HOH HOH A . D 4 HOH 45 1045 2045 HOH HOH A . D 4 HOH 46 1046 2046 HOH HOH A . D 4 HOH 47 1047 2047 HOH HOH A . D 4 HOH 48 1048 2048 HOH HOH A . D 4 HOH 49 1049 2049 HOH HOH A . D 4 HOH 50 1050 2050 HOH HOH A . D 4 HOH 51 1051 2051 HOH HOH A . D 4 HOH 52 1052 2052 HOH HOH A . D 4 HOH 53 1053 2053 HOH HOH A . D 4 HOH 54 1054 2054 HOH HOH A . D 4 HOH 55 1055 2055 HOH HOH A . D 4 HOH 56 1056 2056 HOH HOH A . D 4 HOH 57 1057 2057 HOH HOH A . D 4 HOH 58 1058 2058 HOH HOH A . D 4 HOH 59 1059 2059 HOH HOH A . D 4 HOH 60 1060 2060 HOH HOH A . D 4 HOH 61 1061 2061 HOH HOH A . D 4 HOH 62 1062 2062 HOH HOH A . D 4 HOH 63 1063 2063 HOH HOH A . D 4 HOH 64 1064 2064 HOH HOH A . D 4 HOH 65 1065 2065 HOH HOH A . D 4 HOH 66 1066 2066 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OG ? A SER 23 ? A SER 17 ? 1_555 MG ? C MG . ? A MG 168 ? 1_555 O2G ? B GNP . ? A GNP 167 ? 1_555 177.1 ? 2 OG ? A SER 23 ? A SER 17 ? 1_555 MG ? C MG . ? A MG 168 ? 1_555 O2B ? B GNP . ? A GNP 167 ? 1_555 85.4 ? 3 O2G ? B GNP . ? A GNP 167 ? 1_555 MG ? C MG . ? A MG 168 ? 1_555 O2B ? B GNP . ? A GNP 167 ? 1_555 92.0 ? 4 OG ? A SER 23 ? A SER 17 ? 1_555 MG ? C MG . ? A MG 168 ? 1_555 O ? D HOH . ? A HOH 1001 ? 1_555 87.3 ? 5 O2G ? B GNP . ? A GNP 167 ? 1_555 MG ? C MG . ? A MG 168 ? 1_555 O ? D HOH . ? A HOH 1001 ? 1_555 94.2 ? 6 O2B ? B GNP . ? A GNP 167 ? 1_555 MG ? C MG . ? A MG 168 ? 1_555 O ? D HOH . ? A HOH 1001 ? 1_555 96.1 ? 7 OG ? A SER 23 ? A SER 17 ? 1_555 MG ? C MG . ? A MG 168 ? 1_555 O ? D HOH . ? A HOH 1002 ? 1_555 85.7 ? 8 O2G ? B GNP . ? A GNP 167 ? 1_555 MG ? C MG . ? A MG 168 ? 1_555 O ? D HOH . ? A HOH 1002 ? 1_555 92.9 ? 9 O2B ? B GNP . ? A GNP 167 ? 1_555 MG ? C MG . ? A MG 168 ? 1_555 O ? D HOH . ? A HOH 1002 ? 1_555 84.1 ? 10 O ? D HOH . ? A HOH 1001 ? 1_555 MG ? C MG . ? A MG 168 ? 1_555 O ? D HOH . ? A HOH 1002 ? 1_555 172.9 ? 11 OG ? A SER 23 ? A SER 17 ? 1_555 MG ? C MG . ? A MG 168 ? 1_555 O ? D HOH . ? A HOH 1003 ? 1_555 88.1 ? 12 O2G ? B GNP . ? A GNP 167 ? 1_555 MG ? C MG . ? A MG 168 ? 1_555 O ? D HOH . ? A HOH 1003 ? 1_555 94.5 ? 13 O2B ? B GNP . ? A GNP 167 ? 1_555 MG ? C MG . ? A MG 168 ? 1_555 O ? D HOH . ? A HOH 1003 ? 1_555 172.9 ? 14 O ? D HOH . ? A HOH 1001 ? 1_555 MG ? C MG . ? A MG 168 ? 1_555 O ? D HOH . ? A HOH 1003 ? 1_555 86.3 ? 15 O ? D HOH . ? A HOH 1002 ? 1_555 MG ? C MG . ? A MG 168 ? 1_555 O ? D HOH . ? A HOH 1003 ? 1_555 92.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-06-16 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2014-02-12 4 'Structure model' 1 3 2023-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_ref_seq_dif 8 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.value' 16 4 'Structure model' '_struct_conn.pdbx_dist_value' 17 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 18 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 19 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 23 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 24 4 'Structure model' '_struct_ref_seq_dif.details' 25 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 26 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 27 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal BSS 'data collection' . ? 1 AMoRE phasing . ? 2 REFMAC refinement 5.5.0072 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ARG _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 149 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 81.90 _pdbx_validate_torsion.psi -5.17 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -5 ? A GLY 1 2 1 Y 1 A PRO -4 ? A PRO 2 3 1 Y 1 A LEU -3 ? A LEU 3 4 1 Y 1 A GLY -2 ? A GLY 4 5 1 Y 1 A SER -1 ? A SER 5 6 1 Y 1 A ASP 0 ? A ASP 6 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 GNP PG P N N 137 GNP O1G O N N 138 GNP O2G O N N 139 GNP O3G O N N 140 GNP N3B N N N 141 GNP PB P N R 142 GNP O1B O N N 143 GNP O2B O N N 144 GNP O3A O N N 145 GNP PA P N S 146 GNP O1A O N N 147 GNP O2A O N N 148 GNP "O5'" O N N 149 GNP "C5'" C N N 150 GNP "C4'" C N R 151 GNP "O4'" O N N 152 GNP "C3'" C N S 153 GNP "O3'" O N N 154 GNP "C2'" C N R 155 GNP "O2'" O N N 156 GNP "C1'" C N R 157 GNP N9 N Y N 158 GNP C8 C Y N 159 GNP N7 N Y N 160 GNP C5 C Y N 161 GNP C6 C Y N 162 GNP O6 O N N 163 GNP N1 N Y N 164 GNP C2 C Y N 165 GNP N2 N N N 166 GNP N3 N Y N 167 GNP C4 C Y N 168 GNP HOG2 H N N 169 GNP HOG3 H N N 170 GNP HNB3 H N N 171 GNP HOB2 H N N 172 GNP HOA2 H N N 173 GNP "H5'2" H N N 174 GNP "H5'1" H N N 175 GNP "H4'" H N N 176 GNP "H3'" H N N 177 GNP "HO3'" H N N 178 GNP "H2'" H N N 179 GNP "HO2'" H N N 180 GNP "H1'" H N N 181 GNP H8 H N N 182 GNP HN1 H N N 183 GNP HN21 H N N 184 GNP HN22 H N N 185 HIS N N N N 186 HIS CA C N S 187 HIS C C N N 188 HIS O O N N 189 HIS CB C N N 190 HIS CG C Y N 191 HIS ND1 N Y N 192 HIS CD2 C Y N 193 HIS CE1 C Y N 194 HIS NE2 N Y N 195 HIS OXT O N N 196 HIS H H N N 197 HIS H2 H N N 198 HIS HA H N N 199 HIS HB2 H N N 200 HIS HB3 H N N 201 HIS HD1 H N N 202 HIS HD2 H N N 203 HIS HE1 H N N 204 HIS HE2 H N N 205 HIS HXT H N N 206 HOH O O N N 207 HOH H1 H N N 208 HOH H2 H N N 209 ILE N N N N 210 ILE CA C N S 211 ILE C C N N 212 ILE O O N N 213 ILE CB C N S 214 ILE CG1 C N N 215 ILE CG2 C N N 216 ILE CD1 C N N 217 ILE OXT O N N 218 ILE H H N N 219 ILE H2 H N N 220 ILE HA H N N 221 ILE HB H N N 222 ILE HG12 H N N 223 ILE HG13 H N N 224 ILE HG21 H N N 225 ILE HG22 H N N 226 ILE HG23 H N N 227 ILE HD11 H N N 228 ILE HD12 H N N 229 ILE HD13 H N N 230 ILE HXT H N N 231 LEU N N N N 232 LEU CA C N S 233 LEU C C N N 234 LEU O O N N 235 LEU CB C N N 236 LEU CG C N N 237 LEU CD1 C N N 238 LEU CD2 C N N 239 LEU OXT O N N 240 LEU H H N N 241 LEU H2 H N N 242 LEU HA H N N 243 LEU HB2 H N N 244 LEU HB3 H N N 245 LEU HG H N N 246 LEU HD11 H N N 247 LEU HD12 H N N 248 LEU HD13 H N N 249 LEU HD21 H N N 250 LEU HD22 H N N 251 LEU HD23 H N N 252 LEU HXT H N N 253 LYS N N N N 254 LYS CA C N S 255 LYS C C N N 256 LYS O O N N 257 LYS CB C N N 258 LYS CG C N N 259 LYS CD C N N 260 LYS CE C N N 261 LYS NZ N N N 262 LYS OXT O N N 263 LYS H H N N 264 LYS H2 H N N 265 LYS HA H N N 266 LYS HB2 H N N 267 LYS HB3 H N N 268 LYS HG2 H N N 269 LYS HG3 H N N 270 LYS HD2 H N N 271 LYS HD3 H N N 272 LYS HE2 H N N 273 LYS HE3 H N N 274 LYS HZ1 H N N 275 LYS HZ2 H N N 276 LYS HZ3 H N N 277 LYS HXT H N N 278 MET N N N N 279 MET CA C N S 280 MET C C N N 281 MET O O N N 282 MET CB C N N 283 MET CG C N N 284 MET SD S N N 285 MET CE C N N 286 MET OXT O N N 287 MET H H N N 288 MET H2 H N N 289 MET HA H N N 290 MET HB2 H N N 291 MET HB3 H N N 292 MET HG2 H N N 293 MET HG3 H N N 294 MET HE1 H N N 295 MET HE2 H N N 296 MET HE3 H N N 297 MET HXT H N N 298 MG MG MG N N 299 PHE N N N N 300 PHE CA C N S 301 PHE C C N N 302 PHE O O N N 303 PHE CB C N N 304 PHE CG C Y N 305 PHE CD1 C Y N 306 PHE CD2 C Y N 307 PHE CE1 C Y N 308 PHE CE2 C Y N 309 PHE CZ C Y N 310 PHE OXT O N N 311 PHE H H N N 312 PHE H2 H N N 313 PHE HA H N N 314 PHE HB2 H N N 315 PHE HB3 H N N 316 PHE HD1 H N N 317 PHE HD2 H N N 318 PHE HE1 H N N 319 PHE HE2 H N N 320 PHE HZ H N N 321 PHE HXT H N N 322 PRO N N N N 323 PRO CA C N S 324 PRO C C N N 325 PRO O O N N 326 PRO CB C N N 327 PRO CG C N N 328 PRO CD C N N 329 PRO OXT O N N 330 PRO H H N N 331 PRO HA H N N 332 PRO HB2 H N N 333 PRO HB3 H N N 334 PRO HG2 H N N 335 PRO HG3 H N N 336 PRO HD2 H N N 337 PRO HD3 H N N 338 PRO HXT H N N 339 SER N N N N 340 SER CA C N S 341 SER C C N N 342 SER O O N N 343 SER CB C N N 344 SER OG O N N 345 SER OXT O N N 346 SER H H N N 347 SER H2 H N N 348 SER HA H N N 349 SER HB2 H N N 350 SER HB3 H N N 351 SER HG H N N 352 SER HXT H N N 353 THR N N N N 354 THR CA C N S 355 THR C C N N 356 THR O O N N 357 THR CB C N R 358 THR OG1 O N N 359 THR CG2 C N N 360 THR OXT O N N 361 THR H H N N 362 THR H2 H N N 363 THR HA H N N 364 THR HB H N N 365 THR HG1 H N N 366 THR HG21 H N N 367 THR HG22 H N N 368 THR HG23 H N N 369 THR HXT H N N 370 TYR N N N N 371 TYR CA C N S 372 TYR C C N N 373 TYR O O N N 374 TYR CB C N N 375 TYR CG C Y N 376 TYR CD1 C Y N 377 TYR CD2 C Y N 378 TYR CE1 C Y N 379 TYR CE2 C Y N 380 TYR CZ C Y N 381 TYR OH O N N 382 TYR OXT O N N 383 TYR H H N N 384 TYR H2 H N N 385 TYR HA H N N 386 TYR HB2 H N N 387 TYR HB3 H N N 388 TYR HD1 H N N 389 TYR HD2 H N N 390 TYR HE1 H N N 391 TYR HE2 H N N 392 TYR HH H N N 393 TYR HXT H N N 394 VAL N N N N 395 VAL CA C N S 396 VAL C C N N 397 VAL O O N N 398 VAL CB C N N 399 VAL CG1 C N N 400 VAL CG2 C N N 401 VAL OXT O N N 402 VAL H H N N 403 VAL H2 H N N 404 VAL HA H N N 405 VAL HB H N N 406 VAL HG11 H N N 407 VAL HG12 H N N 408 VAL HG13 H N N 409 VAL HG21 H N N 410 VAL HG22 H N N 411 VAL HG23 H N N 412 VAL HXT H N N 413 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 GNP PG O1G doub N N 129 GNP PG O2G sing N N 130 GNP PG O3G sing N N 131 GNP PG N3B sing N N 132 GNP O2G HOG2 sing N N 133 GNP O3G HOG3 sing N N 134 GNP N3B PB sing N N 135 GNP N3B HNB3 sing N N 136 GNP PB O1B doub N N 137 GNP PB O2B sing N N 138 GNP PB O3A sing N N 139 GNP O2B HOB2 sing N N 140 GNP O3A PA sing N N 141 GNP PA O1A doub N N 142 GNP PA O2A sing N N 143 GNP PA "O5'" sing N N 144 GNP O2A HOA2 sing N N 145 GNP "O5'" "C5'" sing N N 146 GNP "C5'" "C4'" sing N N 147 GNP "C5'" "H5'2" sing N N 148 GNP "C5'" "H5'1" sing N N 149 GNP "C4'" "O4'" sing N N 150 GNP "C4'" "C3'" sing N N 151 GNP "C4'" "H4'" sing N N 152 GNP "O4'" "C1'" sing N N 153 GNP "C3'" "O3'" sing N N 154 GNP "C3'" "C2'" sing N N 155 GNP "C3'" "H3'" sing N N 156 GNP "O3'" "HO3'" sing N N 157 GNP "C2'" "O2'" sing N N 158 GNP "C2'" "C1'" sing N N 159 GNP "C2'" "H2'" sing N N 160 GNP "O2'" "HO2'" sing N N 161 GNP "C1'" N9 sing N N 162 GNP "C1'" "H1'" sing N N 163 GNP N9 C8 sing Y N 164 GNP N9 C4 sing Y N 165 GNP C8 N7 doub Y N 166 GNP C8 H8 sing N N 167 GNP N7 C5 sing Y N 168 GNP C5 C6 sing Y N 169 GNP C5 C4 doub Y N 170 GNP C6 O6 doub N N 171 GNP C6 N1 sing Y N 172 GNP N1 C2 sing Y N 173 GNP N1 HN1 sing N N 174 GNP C2 N2 sing N N 175 GNP C2 N3 doub Y N 176 GNP N2 HN21 sing N N 177 GNP N2 HN22 sing N N 178 GNP N3 C4 sing Y N 179 HIS N CA sing N N 180 HIS N H sing N N 181 HIS N H2 sing N N 182 HIS CA C sing N N 183 HIS CA CB sing N N 184 HIS CA HA sing N N 185 HIS C O doub N N 186 HIS C OXT sing N N 187 HIS CB CG sing N N 188 HIS CB HB2 sing N N 189 HIS CB HB3 sing N N 190 HIS CG ND1 sing Y N 191 HIS CG CD2 doub Y N 192 HIS ND1 CE1 doub Y N 193 HIS ND1 HD1 sing N N 194 HIS CD2 NE2 sing Y N 195 HIS CD2 HD2 sing N N 196 HIS CE1 NE2 sing Y N 197 HIS CE1 HE1 sing N N 198 HIS NE2 HE2 sing N N 199 HIS OXT HXT sing N N 200 HOH O H1 sing N N 201 HOH O H2 sing N N 202 ILE N CA sing N N 203 ILE N H sing N N 204 ILE N H2 sing N N 205 ILE CA C sing N N 206 ILE CA CB sing N N 207 ILE CA HA sing N N 208 ILE C O doub N N 209 ILE C OXT sing N N 210 ILE CB CG1 sing N N 211 ILE CB CG2 sing N N 212 ILE CB HB sing N N 213 ILE CG1 CD1 sing N N 214 ILE CG1 HG12 sing N N 215 ILE CG1 HG13 sing N N 216 ILE CG2 HG21 sing N N 217 ILE CG2 HG22 sing N N 218 ILE CG2 HG23 sing N N 219 ILE CD1 HD11 sing N N 220 ILE CD1 HD12 sing N N 221 ILE CD1 HD13 sing N N 222 ILE OXT HXT sing N N 223 LEU N CA sing N N 224 LEU N H sing N N 225 LEU N H2 sing N N 226 LEU CA C sing N N 227 LEU CA CB sing N N 228 LEU CA HA sing N N 229 LEU C O doub N N 230 LEU C OXT sing N N 231 LEU CB CG sing N N 232 LEU CB HB2 sing N N 233 LEU CB HB3 sing N N 234 LEU CG CD1 sing N N 235 LEU CG CD2 sing N N 236 LEU CG HG sing N N 237 LEU CD1 HD11 sing N N 238 LEU CD1 HD12 sing N N 239 LEU CD1 HD13 sing N N 240 LEU CD2 HD21 sing N N 241 LEU CD2 HD22 sing N N 242 LEU CD2 HD23 sing N N 243 LEU OXT HXT sing N N 244 LYS N CA sing N N 245 LYS N H sing N N 246 LYS N H2 sing N N 247 LYS CA C sing N N 248 LYS CA CB sing N N 249 LYS CA HA sing N N 250 LYS C O doub N N 251 LYS C OXT sing N N 252 LYS CB CG sing N N 253 LYS CB HB2 sing N N 254 LYS CB HB3 sing N N 255 LYS CG CD sing N N 256 LYS CG HG2 sing N N 257 LYS CG HG3 sing N N 258 LYS CD CE sing N N 259 LYS CD HD2 sing N N 260 LYS CD HD3 sing N N 261 LYS CE NZ sing N N 262 LYS CE HE2 sing N N 263 LYS CE HE3 sing N N 264 LYS NZ HZ1 sing N N 265 LYS NZ HZ2 sing N N 266 LYS NZ HZ3 sing N N 267 LYS OXT HXT sing N N 268 MET N CA sing N N 269 MET N H sing N N 270 MET N H2 sing N N 271 MET CA C sing N N 272 MET CA CB sing N N 273 MET CA HA sing N N 274 MET C O doub N N 275 MET C OXT sing N N 276 MET CB CG sing N N 277 MET CB HB2 sing N N 278 MET CB HB3 sing N N 279 MET CG SD sing N N 280 MET CG HG2 sing N N 281 MET CG HG3 sing N N 282 MET SD CE sing N N 283 MET CE HE1 sing N N 284 MET CE HE2 sing N N 285 MET CE HE3 sing N N 286 MET OXT HXT sing N N 287 PHE N CA sing N N 288 PHE N H sing N N 289 PHE N H2 sing N N 290 PHE CA C sing N N 291 PHE CA CB sing N N 292 PHE CA HA sing N N 293 PHE C O doub N N 294 PHE C OXT sing N N 295 PHE CB CG sing N N 296 PHE CB HB2 sing N N 297 PHE CB HB3 sing N N 298 PHE CG CD1 doub Y N 299 PHE CG CD2 sing Y N 300 PHE CD1 CE1 sing Y N 301 PHE CD1 HD1 sing N N 302 PHE CD2 CE2 doub Y N 303 PHE CD2 HD2 sing N N 304 PHE CE1 CZ doub Y N 305 PHE CE1 HE1 sing N N 306 PHE CE2 CZ sing Y N 307 PHE CE2 HE2 sing N N 308 PHE CZ HZ sing N N 309 PHE OXT HXT sing N N 310 PRO N CA sing N N 311 PRO N CD sing N N 312 PRO N H sing N N 313 PRO CA C sing N N 314 PRO CA CB sing N N 315 PRO CA HA sing N N 316 PRO C O doub N N 317 PRO C OXT sing N N 318 PRO CB CG sing N N 319 PRO CB HB2 sing N N 320 PRO CB HB3 sing N N 321 PRO CG CD sing N N 322 PRO CG HG2 sing N N 323 PRO CG HG3 sing N N 324 PRO CD HD2 sing N N 325 PRO CD HD3 sing N N 326 PRO OXT HXT sing N N 327 SER N CA sing N N 328 SER N H sing N N 329 SER N H2 sing N N 330 SER CA C sing N N 331 SER CA CB sing N N 332 SER CA HA sing N N 333 SER C O doub N N 334 SER C OXT sing N N 335 SER CB OG sing N N 336 SER CB HB2 sing N N 337 SER CB HB3 sing N N 338 SER OG HG sing N N 339 SER OXT HXT sing N N 340 THR N CA sing N N 341 THR N H sing N N 342 THR N H2 sing N N 343 THR CA C sing N N 344 THR CA CB sing N N 345 THR CA HA sing N N 346 THR C O doub N N 347 THR C OXT sing N N 348 THR CB OG1 sing N N 349 THR CB CG2 sing N N 350 THR CB HB sing N N 351 THR OG1 HG1 sing N N 352 THR CG2 HG21 sing N N 353 THR CG2 HG22 sing N N 354 THR CG2 HG23 sing N N 355 THR OXT HXT sing N N 356 TYR N CA sing N N 357 TYR N H sing N N 358 TYR N H2 sing N N 359 TYR CA C sing N N 360 TYR CA CB sing N N 361 TYR CA HA sing N N 362 TYR C O doub N N 363 TYR C OXT sing N N 364 TYR CB CG sing N N 365 TYR CB HB2 sing N N 366 TYR CB HB3 sing N N 367 TYR CG CD1 doub Y N 368 TYR CG CD2 sing Y N 369 TYR CD1 CE1 sing Y N 370 TYR CD1 HD1 sing N N 371 TYR CD2 CE2 doub Y N 372 TYR CD2 HD2 sing N N 373 TYR CE1 CZ doub Y N 374 TYR CE1 HE1 sing N N 375 TYR CE2 CZ sing Y N 376 TYR CE2 HE2 sing N N 377 TYR CZ OH sing N N 378 TYR OH HH sing N N 379 TYR OXT HXT sing N N 380 VAL N CA sing N N 381 VAL N H sing N N 382 VAL N H2 sing N N 383 VAL CA C sing N N 384 VAL CA CB sing N N 385 VAL CA HA sing N N 386 VAL C O doub N N 387 VAL C OXT sing N N 388 VAL CB CG1 sing N N 389 VAL CB CG2 sing N N 390 VAL CB HB sing N N 391 VAL CG1 HG11 sing N N 392 VAL CG1 HG12 sing N N 393 VAL CG1 HG13 sing N N 394 VAL CG2 HG21 sing N N 395 VAL CG2 HG22 sing N N 396 VAL CG2 HG23 sing N N 397 VAL OXT HXT sing N N 398 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' GNP 3 'MAGNESIUM ION' MG 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5P21 _pdbx_initial_refinement_model.details 'PDB ENTRY 5P21' #