HEADER FLAVOPROTEIN 07-NOV-09 3KLB TITLE CRYSTAL STRUCTURE OF PUTATIVE FLAVOPROTEIN IN COMPLEX WITH FMN TITLE 2 (YP_213683.1) FROM BACTEROIDES FRAGILIS NCTC 9343 AT 1.75 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE FLAVOPROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES FRAGILIS NCTC 9343; SOURCE 3 ORGANISM_TAXID: 272559; SOURCE 4 STRAIN: ATCC 25285 / NCTC 9343; SOURCE 5 GENE: BF4115; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PUTATIVE FLAVOPROTEIN IN COMPLEX WITH FMN, STRUCTURAL GENOMICS, JOINT KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 PSI-2, FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 3KLB 1 REMARK SEQADV LINK REVDAT 4 17-JUL-19 3KLB 1 REMARK LINK REVDAT 3 01-NOV-17 3KLB 1 REMARK REVDAT 2 13-JUL-11 3KLB 1 VERSN REVDAT 1 26-JAN-10 3KLB 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE FLAVOPROTEIN IN COMPLEX WITH JRNL TITL 2 FMN (YP_213683.1) FROM BACTEROIDES FRAGILIS NCTC 9343 AT JRNL TITL 3 1.75 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 23346 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1196 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1597 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.2050 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.2290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1258 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 84 REMARK 3 SOLVENT ATOMS : 175 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 22.35 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.94000 REMARK 3 B22 (A**2) : -0.94000 REMARK 3 B33 (A**2) : 1.88000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.085 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.087 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.057 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.281 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1483 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1016 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2015 ; 1.548 ; 1.998 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2474 ; 0.961 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 185 ; 6.067 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 58 ;34.974 ;23.793 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 228 ;12.388 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;14.835 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 214 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1652 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 302 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 281 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1037 ; 0.201 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 738 ; 0.186 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 739 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 136 ; 0.164 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.086 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.317 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 43 ; 0.191 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.114 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 2 ; 0.086 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 878 ; 1.722 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 351 ; 0.534 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1432 ; 2.803 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 642 ; 4.327 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 583 ; 5.997 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 161 REMARK 3 ORIGIN FOR THE GROUP (A): 31.3526 10.2525 29.4288 REMARK 3 T TENSOR REMARK 3 T11: -0.0493 T22: -0.0380 REMARK 3 T33: -0.0601 T12: 0.0069 REMARK 3 T13: 0.0042 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 1.2386 L22: 1.2571 REMARK 3 L33: 0.6885 L12: -0.0659 REMARK 3 L13: 0.0748 L23: 0.3734 REMARK 3 S TENSOR REMARK 3 S11: -0.0074 S12: -0.0201 S13: 0.0202 REMARK 3 S21: -0.0269 S22: -0.0022 S23: -0.0244 REMARK 3 S31: -0.0316 S32: 0.0109 S33: 0.0096 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: (1). HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. (2). ATOM RECORD CONTAINS RESIDUAL B FACTORS REMARK 3 ONLY. (3). A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. (4). A MODIFIED FMN RESTRAINTS DICTIONARY REMARK 3 WAS USED DURING THE REFINEMENT TO ALLOW BENDING OF THE FMN RING REMARK 3 ALONG THE N5-N10 VIRTUAL AXIS. THIS RESULTS IN AN IMPROVED FIT REMARK 3 BETWEEN THE FMN COORDINATE MODEL AND ELECTRON DENSITY. (5). REMARK 3 SODIUM ION (NA) AND GLYCEROL (GOL) MOLECULES FROM REMARK 3 CRYSTALLIZATION, AND ETHYLENE GLYCOL (EDO) MOLECULES FROM CRYO REMARK 3 CONDITION ARE MODELED. REMARK 4 REMARK 4 3KLB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1000056134. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162,0.97939,0.97927 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23388 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 27.832 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.73200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10.0000% GLYCEROL, 1.2600M SODIUM REMARK 280 CITRATE, 0.1M HEPES PH 7.5, ADDITIVE: 0.001 M FMN, NANODROP, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 23.94100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 48.38200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 48.38200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.91150 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 48.38200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 48.38200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 11.97050 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 48.38200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.38200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.91150 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 48.38200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.38200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 11.97050 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 23.94100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA A 163 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 195 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 2 CG OD1 ND2 REMARK 470 ASP A 3 CG OD1 OD2 REMARK 470 ARG A 4 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 5 CD CE NZ REMARK 470 LYS A 36 CD CE NZ REMARK 470 LYS A 51 CD CE NZ REMARK 470 LYS A 52 CD CE NZ REMARK 470 LYS A 158 CG CD CE NZ REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 163 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 133 O REMARK 620 2 PRO A 133 O 0.0 REMARK 620 3 ILE A 135 O 103.6 103.6 REMARK 620 4 ILE A 135 O 103.6 103.6 0.0 REMARK 620 5 HOH A 195 O 83.3 83.3 127.2 127.2 REMARK 620 6 HOH A 195 O 83.2 83.2 127.7 127.7 0.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 162 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 163 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 164 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 165 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 166 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 167 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 168 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 169 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 170 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 171 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 172 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 173 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 174 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 175 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 388560 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT (1-161) WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE FOLLOWED BY THE TARGET SEQUENCE. DBREF 3KLB A 1 161 UNP Q5L808 Q5L808_BACFN 1 161 SEQADV 3KLB GLY A 0 UNP Q5L808 EXPRESSION TAG SEQRES 1 A 162 GLY MSE ASN ASP ARG LYS ILE LEU VAL ALA TYR PHE SER SEQRES 2 A 162 CYS SER GLY VAL THR LYS ALA VAL ALA GLU LYS LEU ALA SEQRES 3 A 162 ALA ILE THR GLY ALA ASP LEU TYR GLU ILE LYS PRO GLU SEQRES 4 A 162 VAL PRO TYR THR GLU ALA ASP LEU ASP TRP ASN ASP LYS SEQRES 5 A 162 LYS SER ARG SER SER VAL GLU MSE ARG ASP ALA LEU SER SEQRES 6 A 162 ARG PRO ALA ILE SER GLY THR LEU PHE HIS PRO GLU LYS SEQRES 7 A 162 TYR GLU VAL LEU PHE VAL GLY PHE PRO VAL TRP TRP TYR SEQRES 8 A 162 ILE ALA PRO THR ILE ILE ASN THR PHE LEU GLU SER TYR SEQRES 9 A 162 ASP PHE ALA GLY LYS ILE VAL VAL PRO PHE ALA THR SER SEQRES 10 A 162 GLY GLY SER GLY ILE GLY ASN CYS GLU LYS ASN LEU HIS SEQRES 11 A 162 LYS ALA TYR PRO ASP ILE VAL TRP LYS ASP GLY LYS LEU SEQRES 12 A 162 LEU ASN GLY GLN ILE THR ARG ASP LEU VAL THR GLU TRP SEQRES 13 A 162 PHE GLU LYS ILE ARG LEU MODRES 3KLB MSE A 1 MET SELENOMETHIONINE MODRES 3KLB MSE A 59 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 59 8 HET FMN A 162 31 HET NA A 163 1 HET GOL A 164 6 HET GOL A 165 6 HET EDO A 166 4 HET EDO A 167 4 HET EDO A 168 4 HET EDO A 169 8 HET EDO A 170 4 HET EDO A 171 4 HET EDO A 172 4 HET EDO A 173 4 HET EDO A 174 4 HET EDO A 175 4 HETNAM MSE SELENOMETHIONINE HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 3 NA NA 1+ FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 EDO 10(C2 H6 O2) FORMUL 16 HOH *175(H2 O) HELIX 1 1 GLY A 0 ARG A 4 5 5 HELIX 2 2 GLY A 15 GLY A 29 1 15 HELIX 3 3 GLU A 43 ASP A 47 5 5 HELIX 4 4 SER A 53 ARG A 60 1 8 HELIX 5 5 HIS A 74 TYR A 78 5 5 HELIX 6 6 PRO A 93 SER A 102 1 10 HELIX 7 7 ILE A 121 TYR A 132 1 12 HELIX 8 8 THR A 148 ILE A 159 1 12 SHEET 1 A 5 ASP A 31 GLU A 34 0 SHEET 2 A 5 ILE A 6 TYR A 10 1 N VAL A 8 O ASP A 31 SHEET 3 A 5 VAL A 80 PRO A 86 1 O PHE A 82 N ALA A 9 SHEET 4 A 5 ILE A 109 THR A 115 1 O VAL A 111 N LEU A 81 SHEET 5 A 5 VAL A 136 TRP A 137 1 O VAL A 136 N VAL A 110 SHEET 1 B 5 ASP A 31 GLU A 34 0 SHEET 2 B 5 ILE A 6 TYR A 10 1 N VAL A 8 O ASP A 31 SHEET 3 B 5 VAL A 80 PRO A 86 1 O PHE A 82 N ALA A 9 SHEET 4 B 5 ILE A 109 THR A 115 1 O VAL A 111 N LEU A 81 SHEET 5 B 5 LYS A 141 LEU A 142 1 O LYS A 141 N ALA A 114 LINK C GLY A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N ASN A 2 1555 1555 1.33 LINK C GLU A 58 N MSE A 59 1555 1555 1.32 LINK C MSE A 59 N AARG A 60 1555 1555 1.32 LINK C MSE A 59 N BARG A 60 1555 1555 1.33 LINK O PRO A 133 NA NA A 163 1555 1555 2.32 LINK O PRO A 133 NA NA A 163 1555 7556 2.32 LINK O ILE A 135 NA NA A 163 1555 1555 2.33 LINK O ILE A 135 NA NA A 163 1555 7556 2.33 LINK NA NA A 163 O HOH A 195 1555 1555 2.87 LINK NA NA A 163 O HOH A 195 1555 7556 2.87 SITE 1 AC1 24 SER A 12 CYS A 13 SER A 14 GLY A 15 SITE 2 AC1 24 VAL A 16 THR A 17 TRP A 48 SER A 55 SITE 3 AC1 24 PHE A 73 PRO A 86 VAL A 87 TRP A 88 SITE 4 AC1 24 TRP A 89 TYR A 90 THR A 115 SER A 116 SITE 5 AC1 24 GLY A 117 GLY A 118 SER A 119 HOH A 190 SITE 6 AC1 24 HOH A 206 HOH A 236 HOH A 309 HOH A 344 SITE 1 AC2 3 PRO A 133 ILE A 135 HOH A 195 SITE 1 AC3 5 SER A 56 ARG A 60 TRP A 89 HOH A 256 SITE 2 AC3 5 HOH A 322 SITE 1 AC4 5 PRO A 75 GLU A 76 TYR A 103 ASP A 104 SITE 2 AC4 5 LYS A 108 SITE 1 AC5 7 ARG A 4 LYS A 5 ILE A 6 GLY A 29 SITE 2 AC5 7 ASP A 31 TYR A 78 HOH A 345 SITE 1 AC6 2 PHE A 73 HOH A 319 SITE 1 AC7 3 LYS A 130 ALA A 131 ASP A 139 SITE 1 AC8 6 ALA A 106 GLY A 107 ILE A 109 VAL A 136 SITE 2 AC8 6 LYS A 138 HOH A 349 SITE 1 AC9 9 LEU A 142 LEU A 143 ASN A 144 GLY A 145 SITE 2 AC9 9 GLN A 146 LEU A 151 HOH A 194 HOH A 210 SITE 3 AC9 9 HOH A 249 SITE 1 BC1 3 CYS A 13 TYR A 41 GLU A 43 SITE 1 BC2 4 ALA A 26 GLN A 146 THR A 148 HOH A 274 SITE 1 BC3 3 ILE A 147 HOH A 218 HOH A 226 SITE 1 BC4 5 MSE A 59 ARG A 60 ALA A 62 HOH A 321 SITE 2 BC4 5 HOH A 340 SITE 1 BC5 6 LEU A 100 TYR A 103 PHE A 105 TYR A 132 SITE 2 BC5 6 ASP A 134 HOH A 301 CRYST1 96.764 96.764 47.882 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010334 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010334 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020885 0.00000