HEADER OXIDOREDUCTASE 12-NOV-09 3KN4 TITLE AGAO 6-PHENYL-2,3-HEXADIENYLAMINE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHENYLETHYLAMINE OXIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PRIMARY AMINE OXIDASE; COMPND 5 EC: 1.4.3.21; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARTHROBACTER GLOBIFORMIS; SOURCE 3 ORGANISM_TAXID: 1665; SOURCE 4 STRAIN: ATCC8010,IFO12137; SOURCE 5 GENE: PAOX; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-3C (NOVAGEN), PAGAO2; SOURCE 11 OTHER_DETAILS: THE CONSTRUCT THAT WAS CRYSTALLIZED ENCODES RESIDUES SOURCE 12 3-628 OF PHENYLETHYLAMINE OXIDASE AND A PRE-TAG SPACER(RESIDUE 639- SOURCE 13 640) AND A STREP-TAG II (RESIDUE 641-648). SEE REFERENCE JUDA ET AL. SOURCE 14 (2001) PROTEIN EXPRESSION AND PURIFICATION, 22, 455-461 KEYWDS CUAO, AMINE OXIDASE, ARTHROBACTER GLOBIFORMIS, COPPER CONTAINING, KEYWDS 2 METAL-BINDING, OXIDOREDUCTASE, TPQ, QUINONE, INHIBITION, 6-PHENYL-2, KEYWDS 3 3-HEXADIENYLAMINE, DISULFIDE BOND EXPDTA X-RAY DIFFRACTION AUTHOR Y.H.NGUYEN,K.E.ERNBERG,J.M.GUSS REVDAT 4 22-NOV-23 3KN4 1 REMARK REVDAT 3 01-NOV-23 3KN4 1 REMARK LINK REVDAT 2 01-NOV-17 3KN4 1 REMARK REVDAT 1 27-OCT-10 3KN4 0 JRNL AUTH Y.H.NGUYEN,K.E.ERNBERG,J.M.GUSS JRNL TITL AGAO 6-PHENYL-2,3-HEXADIENYLAMINE COMPLEX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 49890 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2660 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3529 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.3050 REMARK 3 BIN FREE R VALUE SET COUNT : 169 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4838 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 73 REMARK 3 SOLVENT ATOMS : 326 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.77 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.40000 REMARK 3 B22 (A**2) : 3.15000 REMARK 3 B33 (A**2) : -1.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.44000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.158 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.151 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.114 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.343 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5074 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3471 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6904 ; 1.490 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8367 ; 0.886 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 632 ; 5.931 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 246 ;35.675 ;23.171 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 765 ;12.537 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 47 ;17.316 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 741 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5722 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1093 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3092 ; 2.026 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1261 ; 0.628 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5000 ; 3.160 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1982 ; 4.718 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1896 ; 6.527 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 3KN4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1000056198. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-AUG-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52557 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.45700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1SIH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 150MM NA CITRATE PH 7.0, 800MM REMARK 280 (NH4)2SO4), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 78.94400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.66750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 78.94400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.66750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -123.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -34.67786 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 85.44404 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 3 REMARK 465 SER A 4 REMARK 465 THR A 5 REMARK 465 ILE A 6 REMARK 465 GLN A 7 REMARK 465 THR A 8 REMARK 465 SER A 53 REMARK 465 GLU A 54 REMARK 465 PRO A 629 REMARK 465 SER A 630 REMARK 465 GLN A 631 REMARK 465 SER A 632 REMARK 465 GLY A 633 REMARK 465 SER A 634 REMARK 465 HIS A 635 REMARK 465 CYS A 636 REMARK 465 HIS A 637 REMARK 465 GLY A 638 REMARK 465 SER A 639 REMARK 465 ASN A 640 REMARK 465 TRP A 641 REMARK 465 SER A 642 REMARK 465 HIS A 643 REMARK 465 PRO A 644 REMARK 465 GLN A 645 REMARK 465 PHE A 646 REMARK 465 GLU A 647 REMARK 465 LYS A 648 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA A 48 CB REMARK 470 ALA A 55 CB REMARK 470 ARG A 150 NE CZ NH1 NH2 REMARK 470 LYS A 184 NZ REMARK 470 GLU A 208 CG CD OE1 OE2 REMARK 470 ASP A 266 CG OD1 OD2 REMARK 470 GLU A 312 CG CD OE1 OE2 REMARK 470 ARG A 339 CZ NH1 NH2 REMARK 470 ARG A 490 NE CZ NH1 NH2 REMARK 470 ASN A 628 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 97 O HOH A 681 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 505 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 142 -138.40 -135.22 REMARK 500 ASN A 236 15.75 -145.84 REMARK 500 GLU A 241 56.14 39.97 REMARK 500 LYS A 242 -15.29 85.06 REMARK 500 ILE A 271 -59.02 -125.84 REMARK 500 LEU A 303 90.61 71.58 REMARK 500 CYS A 315 -34.97 -147.61 REMARK 500 ALA A 442 53.63 -149.43 REMARK 500 ASN A 464 54.22 -153.53 REMARK 500 SER A 471 -158.34 -143.83 REMARK 500 ASP A 488 85.49 -150.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 701 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 431 NE2 REMARK 620 2 HIS A 433 NE2 99.8 REMARK 620 3 HIS A 592 ND1 98.5 148.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 702 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 440 OD1 REMARK 620 2 MET A 441 O 98.5 REMARK 620 3 ASP A 581 OD1 97.2 124.3 REMARK 620 4 ILE A 582 O 96.6 112.1 118.5 REMARK 620 5 HOH A 760 O 167.9 69.4 89.3 89.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 649 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 650 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 651 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 652 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 653 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 654 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 655 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 656 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 657 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 658 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 659 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 660 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KII RELATED DB: PDB REMARK 900 AGAO SIMILARLY COMPLEXED WITH 5-PHENOXY-2,3-PENTADIENYLAMINE REMARK 900 RELATED ID: 1SIH RELATED DB: PDB REMARK 900 AGAO SIMILARLY COMPLEXED WITH 4-(4-METHYLPHENOXY)-2-BUTYN-1-AMINE REMARK 900 RELATED ID: 1SII RELATED DB: PDB REMARK 900 AGAO SIMILARLY COMPLEXED WITH 4-(2-NAPHTHYLOXY)-2-BUTYN-1-AMINE REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE C-TERMINAL OF SEQUENCE, SNWSHPQFEK, IS A PRE-TAG SPACER REMARK 999 (RESIDUE 639-640) AND A STREP-TAG II (RESIDUE 641-648). DBREF 3KN4 A 3 638 UNP P46881 PAOX_ARTGO 3 638 SEQADV 3KN4 SER A 639 UNP P46881 SEE REMARK 999 SEQADV 3KN4 ASN A 640 UNP P46881 SEE REMARK 999 SEQADV 3KN4 TRP A 641 UNP P46881 SEE REMARK 999 SEQADV 3KN4 SER A 642 UNP P46881 SEE REMARK 999 SEQADV 3KN4 HIS A 643 UNP P46881 SEE REMARK 999 SEQADV 3KN4 PRO A 644 UNP P46881 SEE REMARK 999 SEQADV 3KN4 GLN A 645 UNP P46881 SEE REMARK 999 SEQADV 3KN4 PHE A 646 UNP P46881 SEE REMARK 999 SEQADV 3KN4 GLU A 647 UNP P46881 SEE REMARK 999 SEQADV 3KN4 LYS A 648 UNP P46881 SEE REMARK 999 SEQRES 1 A 646 PRO SER THR ILE GLN THR ALA SER PRO PHE ARG LEU ALA SEQRES 2 A 646 SER ALA GLY GLU ILE SER GLU VAL GLN GLY ILE LEU ARG SEQRES 3 A 646 THR ALA GLY LEU LEU GLY PRO GLU LYS ARG ILE ALA TYR SEQRES 4 A 646 LEU GLY VAL LEU ASP PRO ALA ARG GLY ALA GLY SER GLU SEQRES 5 A 646 ALA GLU ASP ARG ARG PHE ARG VAL PHE ILE HIS ASP VAL SEQRES 6 A 646 SER GLY ALA ARG PRO GLN GLU VAL THR VAL SER VAL THR SEQRES 7 A 646 ASN GLY THR VAL ILE SER ALA VAL GLU LEU ASP THR ALA SEQRES 8 A 646 ALA THR GLY GLU LEU PRO VAL LEU GLU GLU GLU PHE GLU SEQRES 9 A 646 VAL VAL GLU GLN LEU LEU ALA THR ASP GLU ARG TRP LEU SEQRES 10 A 646 LYS ALA LEU ALA ALA ARG ASN LEU ASP VAL SER LYS VAL SEQRES 11 A 646 ARG VAL ALA PRO LEU SER ALA GLY VAL PHE GLU TYR ALA SEQRES 12 A 646 GLU GLU ARG GLY ARG ARG ILE LEU ARG GLY LEU ALA PHE SEQRES 13 A 646 VAL GLN ASP PHE PRO GLU ASP SER ALA TRP ALA HIS PRO SEQRES 14 A 646 VAL ASP GLY LEU VAL ALA TYR VAL ASP VAL VAL SER LYS SEQRES 15 A 646 GLU VAL THR ARG VAL ILE ASP THR GLY VAL PHE PRO VAL SEQRES 16 A 646 PRO ALA GLU HIS GLY ASN TYR THR ASP PRO GLU LEU THR SEQRES 17 A 646 GLY PRO LEU ARG THR THR GLN LYS PRO ILE SER ILE THR SEQRES 18 A 646 GLN PRO GLU GLY PRO SER PHE THR VAL THR GLY GLY ASN SEQRES 19 A 646 HIS ILE GLU TRP GLU LYS TRP SER LEU ASP VAL GLY PHE SEQRES 20 A 646 ASP VAL ARG GLU GLY VAL VAL LEU HIS ASN ILE ALA PHE SEQRES 21 A 646 ARG ASP GLY ASP ARG LEU ARG PRO ILE ILE ASN ARG ALA SEQRES 22 A 646 SER ILE ALA GLU MET VAL VAL PRO TYR GLY ASP PRO SER SEQRES 23 A 646 PRO ILE ARG SER TRP GLN ASN TYR PHE ASP THR GLY GLU SEQRES 24 A 646 TYR LEU VAL GLY GLN TYR ALA ASN SER LEU GLU LEU GLY SEQRES 25 A 646 CYS ASP CYS LEU GLY ASP ILE THR TYR LEU SER PRO VAL SEQRES 26 A 646 ILE SER ASP ALA PHE GLY ASN PRO ARG GLU ILE ARG ASN SEQRES 27 A 646 GLY ILE CYS MET HIS GLU GLU ASP TRP GLY ILE LEU ALA SEQRES 28 A 646 LYS HIS SER ASP LEU TRP SER GLY ILE ASN TYR THR ARG SEQRES 29 A 646 ARG ASN ARG ARG MET VAL ILE SER PHE PHE THR THR ILE SEQRES 30 A 646 GLY ASN P3Q ASP TYR GLY PHE TYR TRP TYR LEU TYR LEU SEQRES 31 A 646 ASP GLY THR ILE GLU PHE GLU ALA LYS ALA THR GLY VAL SEQRES 32 A 646 VAL PHE THR SER ALA PHE PRO GLU GLY GLY SER ASP ASN SEQRES 33 A 646 ILE SER GLN LEU ALA PRO GLY LEU GLY ALA PRO PHE HIS SEQRES 34 A 646 GLN HIS ILE PHE SER ALA ARG LEU ASP MET ALA ILE ASP SEQRES 35 A 646 GLY PHE THR ASN ARG VAL GLU GLU GLU ASP VAL VAL ARG SEQRES 36 A 646 GLN THR MET GLY PRO GLY ASN GLU ARG GLY ASN ALA PHE SEQRES 37 A 646 SER ARG LYS ARG THR VAL LEU THR ARG GLU SER GLU ALA SEQRES 38 A 646 VAL ARG GLU ALA ASP ALA ARG THR GLY ARG THR TRP ILE SEQRES 39 A 646 ILE SER ASN PRO GLU SER LYS ASN ARG LEU ASN GLU PRO SEQRES 40 A 646 VAL GLY TYR LYS LEU HIS ALA HIS ASN GLN PRO THR LEU SEQRES 41 A 646 LEU ALA ASP PRO GLY SER SER ILE ALA ARG ARG ALA ALA SEQRES 42 A 646 PHE ALA THR LYS ASP LEU TRP VAL THR ARG TYR ALA ASP SEQRES 43 A 646 ASP GLU ARG TYR PRO THR GLY ASP PHE VAL ASN GLN HIS SEQRES 44 A 646 SER GLY GLY ALA GLY LEU PRO SER TYR ILE ALA GLN ASP SEQRES 45 A 646 ARG ASP ILE ASP GLY GLN ASP ILE VAL VAL TRP HIS THR SEQRES 46 A 646 PHE GLY LEU THR HIS PHE PRO ARG VAL GLU ASP TRP PRO SEQRES 47 A 646 ILE MET PRO VAL ASP THR VAL GLY PHE LYS LEU ARG PRO SEQRES 48 A 646 GLU GLY PHE PHE ASP ARG SER PRO VAL LEU ASP VAL PRO SEQRES 49 A 646 ALA ASN PRO SER GLN SER GLY SER HIS CYS HIS GLY SER SEQRES 50 A 646 ASN TRP SER HIS PRO GLN PHE GLU LYS MODRES 3KN4 P3Q A 382 TYR HET P3Q A 382 27 HET CU A 701 1 HET NA A 702 1 HET GOL A 649 6 HET GOL A 650 6 HET GOL A 651 6 HET GOL A 652 6 HET GOL A 653 6 HET GOL A 654 6 HET GOL A 655 6 HET GOL A 656 6 HET GOL A 657 6 HET GOL A 658 6 HET GOL A 659 6 HET SO4 A 660 5 HETNAM P3Q 2-HYDROXY-5-{[(1E)-1-(2-OXOETHYLIDENE)-4- HETNAM 2 P3Q PHENYLBUTYL]AMINO}-L-TYROSINE HETNAM CU COPPER (II) ION HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 P3Q C21 H24 N2 O5 FORMUL 2 CU CU 2+ FORMUL 3 NA NA 1+ FORMUL 4 GOL 11(C3 H8 O3) FORMUL 15 SO4 O4 S 2- FORMUL 16 HOH *326(H2 O) HELIX 1 1 SER A 16 ALA A 30 1 15 HELIX 2 2 ASP A 91 GLY A 96 1 6 HELIX 3 3 LEU A 101 PHE A 105 5 5 HELIX 4 4 GLU A 106 THR A 114 1 9 HELIX 5 5 ASP A 115 ALA A 124 1 10 HELIX 6 6 ASP A 128 SER A 130 5 3 HELIX 7 7 TYR A 144 ARG A 148 5 5 HELIX 8 8 SER A 166 HIS A 170 5 5 HELIX 9 9 ASP A 206 GLY A 211 1 6 HELIX 10 10 LEU A 303 ALA A 308 5 6 HELIX 11 11 ARG A 479 GLU A 482 5 4 HELIX 12 12 ASP A 488 GLY A 492 5 5 HELIX 13 13 SER A 528 ALA A 534 1 7 HELIX 14 14 ALA A 535 LYS A 539 5 5 HELIX 15 15 GLY A 566 ALA A 572 1 7 HELIX 16 16 ARG A 595 TRP A 599 5 5 SHEET 1 A 4 LYS A 37 VAL A 44 0 SHEET 2 A 4 ARG A 59 ASP A 66 -1 O HIS A 65 N ARG A 38 SHEET 3 A 4 GLN A 73 SER A 78 -1 O VAL A 75 N VAL A 62 SHEET 4 A 4 THR A 83 GLU A 89 -1 O VAL A 88 N GLU A 74 SHEET 1 B 4 VAL A 132 SER A 138 0 SHEET 2 B 4 ILE A 152 VAL A 159 -1 O ARG A 154 N LEU A 137 SHEET 3 B 4 LEU A 175 ASP A 180 -1 O ALA A 177 N GLY A 155 SHEET 4 B 4 GLU A 185 ASP A 191 -1 O ILE A 190 N VAL A 176 SHEET 1 C 6 THR A 231 THR A 233 0 SHEET 2 C 6 HIS A 237 TRP A 240 -1 O HIS A 237 N THR A 233 SHEET 3 C 6 TRP A 243 ASP A 250 -1 O LEU A 245 N ILE A 238 SHEET 4 C 6 GLY A 254 ASP A 264 -1 O HIS A 258 N ASP A 246 SHEET 5 C 6 ARG A 267 PRO A 283 -1 O ARG A 269 N PHE A 262 SHEET 6 C 6 ASN A 295 PHE A 297 -1 O TYR A 296 N VAL A 282 SHEET 1 D 9 THR A 231 THR A 233 0 SHEET 2 D 9 HIS A 237 TRP A 240 -1 O HIS A 237 N THR A 233 SHEET 3 D 9 TRP A 243 ASP A 250 -1 O LEU A 245 N ILE A 238 SHEET 4 D 9 GLY A 254 ASP A 264 -1 O HIS A 258 N ASP A 246 SHEET 5 D 9 ARG A 267 PRO A 283 -1 O ARG A 269 N PHE A 262 SHEET 6 D 9 HIS A 431 MET A 441 -1 O ASP A 440 N ARG A 274 SHEET 7 D 9 ILE A 582 HIS A 592 -1 O VAL A 584 N LEU A 439 SHEET 8 D 9 LEU A 541 ARG A 545 -1 N TRP A 542 O TRP A 585 SHEET 9 D 9 VAL A 484 ARG A 485 -1 N ARG A 485 O LEU A 541 SHEET 1 E10 THR A 322 LEU A 324 0 SHEET 2 E10 ILE A 342 SER A 356 -1 O MET A 344 N THR A 322 SHEET 3 E10 ASN A 363 ILE A 379 -1 O VAL A 372 N HIS A 345 SHEET 4 E10 P3Q A 382 TYR A 391 -1 O PHE A 386 N PHE A 375 SHEET 5 E10 ILE A 396 GLY A 404 -1 O GLU A 397 N TYR A 389 SHEET 6 E10 MET A 602 PRO A 613 -1 O VAL A 607 N ALA A 400 SHEET 7 E10 PRO A 509 ALA A 516 -1 N HIS A 515 O LYS A 610 SHEET 8 E10 THR A 494 LYS A 503 -1 N TRP A 495 O LEU A 514 SHEET 9 E10 ARG A 449 ARG A 457 -1 N GLU A 453 O THR A 494 SHEET 10 E10 PHE A 470 LEU A 477 -1 O LEU A 477 N VAL A 450 SHEET 1 F 2 VAL A 327 SER A 329 0 SHEET 2 F 2 PRO A 335 GLU A 337 -1 O ARG A 336 N ILE A 328 SHEET 1 G 3 SER A 409 ALA A 410 0 SHEET 2 G 3 LEU A 426 PRO A 429 -1 O GLY A 427 N SER A 409 SHEET 3 G 3 ILE A 419 ALA A 423 -1 N ALA A 423 O LEU A 426 SSBOND 1 CYS A 317 CYS A 343 1555 1555 2.05 LINK C ASN A 381 N P3Q A 382 1555 1555 1.34 LINK C P3Q A 382 N ASP A 383 1555 1555 1.32 LINK NE2 HIS A 431 CU CU A 701 1555 1555 2.08 LINK NE2 HIS A 433 CU CU A 701 1555 1555 2.15 LINK OD1 ASP A 440 NA NA A 702 1555 1555 2.32 LINK O MET A 441 NA NA A 702 1555 1555 2.37 LINK OD1 ASP A 581 NA NA A 702 1555 1555 2.40 LINK O ILE A 582 NA NA A 702 1555 1555 2.37 LINK ND1 HIS A 592 CU CU A 701 1555 1555 2.23 LINK NA NA A 702 O HOH A 760 1555 1555 2.78 CISPEP 1 TRP A 599 PRO A 600 0 1.88 SITE 1 AC1 4 HIS A 431 HIS A 433 HIS A 592 HOH A 759 SITE 1 AC2 5 ASP A 440 MET A 441 ASP A 581 ILE A 582 SITE 2 AC2 5 HOH A 760 SITE 1 AC3 6 ASN A 368 ASP A 393 GLU A 397 LYS A 610 SITE 2 AC3 6 GOL A 654 HOH A 802 SITE 1 AC4 11 GLU A 347 ASP A 348 TRP A 349 GLY A 350 SITE 2 AC4 11 ARG A 370 LYS A 401 GOL A 654 SO4 A 660 SITE 3 AC4 11 HOH A 736 HOH A 958 HOH A 988 SITE 1 AC5 3 ARG A 479 ARG A 545 ASP A 576 SITE 1 AC6 6 LEU A 590 ASP A 605 LYS A 610 GOL A 653 SITE 2 AC6 6 HOH A 692 HOH A 875 SITE 1 AC7 7 GLY A 492 LYS A 513 HIS A 515 GOL A 652 SITE 2 AC7 7 HOH A 776 HOH A 900 HOH A 925 SITE 1 AC8 7 ARG A 370 TYR A 389 GLU A 397 GLU A 399 SITE 2 AC8 7 GOL A 649 GOL A 650 HOH A 922 SITE 1 AC9 8 LEU A 209 THR A 210 ARG A 619 SER A 620 SITE 2 AC9 8 PRO A 621 VAL A 622 LEU A 623 HOH A 748 SITE 1 BC1 9 ARG A 532 ARG A 533 THR A 554 HIS A 561 SITE 2 BC1 9 SER A 562 GLY A 563 GLY A 564 ALA A 565 SITE 3 BC1 9 HOH A 673 SITE 1 BC2 7 TYR A 41 VAL A 44 LEU A 45 ASP A 46 SITE 2 BC2 7 ASP A 250 ARG A 551 HOH A 893 SITE 1 BC3 5 VAL A 159 ASP A 161 HIS A 170 VAL A 197 SITE 2 BC3 5 ALA A 199 SITE 1 BC4 4 ASP A 444 PHE A 446 THR A 447 ASN A 499 SITE 1 BC5 9 ASP A 316 CYS A 317 LEU A 318 HIS A 345 SITE 2 BC5 9 ARG A 367 GOL A 650 HOH A 775 HOH A 921 SITE 3 BC5 9 HOH A 927 CRYST1 157.888 63.335 92.213 90.00 112.09 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006334 0.000000 0.002571 0.00000 SCALE2 0.000000 0.015789 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011704 0.00000