HEADER OXIDOREDUCTASE 13-NOV-09 3KO6 TITLE CRYSTAL STRUCTURE OF YEAST FREE METHIONINE-R-SULFOXIDE REDUCTASE YKG9 TITLE 2 IN COMPLEX WITH THE SUBSTRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UPF0067 GAF DOMAIN-CONTAINING PROTEIN YKL069W; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: YKG9; COMPND 5 EC: 1.8.4.14; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_TAXID: 559292; SOURCE 4 STRAIN: S288C; SOURCE 5 GENE: YKL069W; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS SACCHAROMYCES CEREVISIAE, METHIONINE-R-SULFOXIDE REDUCTASE, SUBSTRATE KEYWDS 2 BINDING, CATALYTIC MECHANISM, PRODUCT DISSOCIATION, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR X.-X.MA,P.-C.GUO,Y.CHEN,C.-Z.ZHOU REVDAT 1 17-NOV-10 3KO6 0 JRNL AUTH X.-X.MA,P.-C.GUO,Y.CHEN,C.-Z.ZHOU JRNL TITL CRYSTAL STRUCTURE OF YEAST FREE METHIONINE-R-SULFOXIDE JRNL TITL 2 REDUCTASE YKG9 IN COMPLEX WITH THE SUBSTRATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 14488 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 761 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 984 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.3340 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.4510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2718 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 116 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.20000 REMARK 3 B22 (A**2) : -0.20000 REMARK 3 B33 (A**2) : 0.41000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.522 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.293 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.201 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.432 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2794 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3790 ; 1.178 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 350 ; 5.671 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 126 ;37.259 ;26.508 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 466 ;14.921 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 428 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2094 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1748 ; 0.697 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2812 ; 1.289 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1046 ; 1.547 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 978 ; 2.651 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 179 REMARK 3 ORIGIN FOR THE GROUP (A): 35.6360 13.7670 7.0580 REMARK 3 T TENSOR REMARK 3 T11: 0.1525 T22: 0.1674 REMARK 3 T33: 0.0035 T12: 0.0230 REMARK 3 T13: 0.0117 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.9721 L22: 0.8623 REMARK 3 L33: 0.5664 L12: -0.7377 REMARK 3 L13: 0.4418 L23: -0.0047 REMARK 3 S TENSOR REMARK 3 S11: 0.0033 S12: -0.0837 S13: 0.0180 REMARK 3 S21: -0.0149 S22: 0.0196 S23: -0.0406 REMARK 3 S31: -0.0331 S32: -0.0750 S33: -0.0229 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 179 REMARK 3 ORIGIN FOR THE GROUP (A): 52.8330 1.3530 -1.6620 REMARK 3 T TENSOR REMARK 3 T11: 0.1576 T22: 0.1455 REMARK 3 T33: 0.0241 T12: 0.0080 REMARK 3 T13: 0.0082 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.6365 L22: 0.8758 REMARK 3 L33: 0.6853 L12: -0.5261 REMARK 3 L13: 0.1237 L23: -0.3797 REMARK 3 S TENSOR REMARK 3 S11: 0.0471 S12: -0.0227 S13: 0.0324 REMARK 3 S21: -0.0681 S22: -0.0155 S23: -0.0911 REMARK 3 S31: 0.0215 S32: 0.0023 S33: -0.0316 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 181 A 181 REMARK 3 ORIGIN FOR THE GROUP (A): 33.0920 16.0410 -3.7940 REMARK 3 T TENSOR REMARK 3 T11: 0.9536 T22: 0.4190 REMARK 3 T33: 0.1606 T12: 0.1044 REMARK 3 T13: -0.0319 T23: 0.0980 REMARK 3 L TENSOR REMARK 3 L11: 67.1987 L22: 70.2410 REMARK 3 L33: 33.3727 L12: -47.3548 REMARK 3 L13: 37.9738 L23: -47.7182 REMARK 3 S TENSOR REMARK 3 S11: 1.4403 S12: -0.7072 S13: 0.2937 REMARK 3 S21: -0.3287 S22: -0.6218 S23: 1.4992 REMARK 3 S31: 0.4429 S32: 0.2248 S33: -0.8185 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 181 B 181 REMARK 3 ORIGIN FOR THE GROUP (A): 54.9850 -1.4700 9.1410 REMARK 3 T TENSOR REMARK 3 T11: 0.1726 T22: 0.1576 REMARK 3 T33: 0.0741 T12: 0.0223 REMARK 3 T13: 0.0295 T23: -0.0506 REMARK 3 L TENSOR REMARK 3 L11: 70.5300 L22: 36.8952 REMARK 3 L33: 0.4008 L12: -3.0803 REMARK 3 L13: -4.4402 L23: -1.9056 REMARK 3 S TENSOR REMARK 3 S11: 0.6982 S12: 0.3552 S13: -0.6702 REMARK 3 S21: -0.0205 S22: -0.7233 S23: 0.1245 REMARK 3 S31: -0.0524 S32: 0.0262 S33: 0.0251 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3KO6 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-NOV-09. REMARK 100 THE RCSB ID CODE IS RCSB056236. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15274 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.12300 REMARK 200 R SYM (I) : 0.09200 REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.49900 REMARK 200 R SYM FOR SHELL (I) : 0.41200 REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH 8.0, 2.0M (NH4)2SO4, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.78000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 36.77400 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 36.77400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 122.67000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 36.77400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 36.77400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.89000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 36.77400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.77400 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 122.67000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 36.77400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.77400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 40.89000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 81.78000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 203 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 240 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 LYS A 180 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 SER B 3 REMARK 465 LYS B 180 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 89 129.30 -35.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SME A 181 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SME B 181 DBREF 3KO6 A 1 180 UNP P36088 YKG9_YEAST 1 180 DBREF 3KO6 B 1 180 UNP P36088 YKG9_YEAST 1 180 SEQRES 1 A 180 MET GLY SER SER THR GLY PHE HIS HIS ALA ASP HIS VAL SEQRES 2 A 180 ASN TYR SER SER ASN LEU ASN LYS GLU GLU ILE LEU GLU SEQRES 3 A 180 GLN LEU LEU LEU SER TYR GLU GLY LEU SER ASP GLY GLN SEQRES 4 A 180 VAL ASN TRP VAL CYS ASN LEU SER ASN ALA SER SER LEU SEQRES 5 A 180 ILE TRP HIS ALA TYR LYS SER LEU ALA VAL ASP ILE ASN SEQRES 6 A 180 TRP ALA GLY PHE TYR VAL THR GLN ALA SER GLU GLU ASN SEQRES 7 A 180 THR LEU ILE LEU GLY PRO PHE GLN GLY LYS VAL ALA CYS SEQRES 8 A 180 GLN MET ILE GLN PHE GLY LYS GLY VAL CYS GLY THR ALA SEQRES 9 A 180 ALA SER THR LYS GLU THR GLN ILE VAL PRO ASP VAL ASN SEQRES 10 A 180 LYS TYR PRO GLY HIS ILE ALA CYS ASP GLY GLU THR LYS SEQRES 11 A 180 SER GLU ILE VAL VAL PRO ILE ILE SER ASN ASP GLY LYS SEQRES 12 A 180 THR LEU GLY VAL ILE ASP ILE ASP CYS LEU ASP TYR GLU SEQRES 13 A 180 GLY PHE ASP HIS VAL ASP LYS GLU PHE LEU GLU LYS LEU SEQRES 14 A 180 ALA LYS LEU ILE ASN LYS SER CYS VAL PHE LYS SEQRES 1 B 180 MET GLY SER SER THR GLY PHE HIS HIS ALA ASP HIS VAL SEQRES 2 B 180 ASN TYR SER SER ASN LEU ASN LYS GLU GLU ILE LEU GLU SEQRES 3 B 180 GLN LEU LEU LEU SER TYR GLU GLY LEU SER ASP GLY GLN SEQRES 4 B 180 VAL ASN TRP VAL CYS ASN LEU SER ASN ALA SER SER LEU SEQRES 5 B 180 ILE TRP HIS ALA TYR LYS SER LEU ALA VAL ASP ILE ASN SEQRES 6 B 180 TRP ALA GLY PHE TYR VAL THR GLN ALA SER GLU GLU ASN SEQRES 7 B 180 THR LEU ILE LEU GLY PRO PHE GLN GLY LYS VAL ALA CYS SEQRES 8 B 180 GLN MET ILE GLN PHE GLY LYS GLY VAL CYS GLY THR ALA SEQRES 9 B 180 ALA SER THR LYS GLU THR GLN ILE VAL PRO ASP VAL ASN SEQRES 10 B 180 LYS TYR PRO GLY HIS ILE ALA CYS ASP GLY GLU THR LYS SEQRES 11 B 180 SER GLU ILE VAL VAL PRO ILE ILE SER ASN ASP GLY LYS SEQRES 12 B 180 THR LEU GLY VAL ILE ASP ILE ASP CYS LEU ASP TYR GLU SEQRES 13 B 180 GLY PHE ASP HIS VAL ASP LYS GLU PHE LEU GLU LYS LEU SEQRES 14 B 180 ALA LYS LEU ILE ASN LYS SER CYS VAL PHE LYS HET SME A 181 10 HET SME B 181 10 HETNAM SME METHIONINE SULFOXIDE FORMUL 3 SME 2(C5 H11 N O3 S) FORMUL 5 HOH *116(H2 O) HELIX 1 1 HIS A 8 ASN A 14 5 7 HELIX 2 2 ASN A 20 ASP A 37 1 18 HELIX 3 3 ASN A 41 LEU A 60 1 20 HELIX 4 4 LYS A 98 LYS A 108 1 11 HELIX 5 5 ASP A 115 TYR A 119 5 5 HELIX 6 6 ASP A 159 CYS A 177 1 19 HELIX 7 7 HIS B 8 ASN B 14 5 7 HELIX 8 8 ASN B 20 SER B 36 1 17 HELIX 9 9 ASN B 41 LEU B 60 1 20 HELIX 10 10 LYS B 98 LYS B 108 1 11 HELIX 11 11 ASP B 115 TYR B 119 5 5 HELIX 12 12 ASP B 159 CYS B 177 1 19 SHEET 1 A 6 MET A 93 GLN A 95 0 SHEET 2 A 6 THR A 79 GLY A 87 -1 N LEU A 80 O ILE A 94 SHEET 3 A 6 ILE A 64 THR A 72 -1 N ALA A 67 O GLN A 86 SHEET 4 A 6 THR A 144 CYS A 152 -1 O ASP A 149 N GLY A 68 SHEET 5 A 6 SER A 131 ILE A 138 -1 N VAL A 135 O ILE A 148 SHEET 6 A 6 GLN A 111 VAL A 113 -1 N VAL A 113 O GLU A 132 SHEET 1 B 6 MET B 93 GLN B 95 0 SHEET 2 B 6 THR B 79 GLY B 87 -1 N LEU B 80 O ILE B 94 SHEET 3 B 6 ILE B 64 THR B 72 -1 N VAL B 71 O ILE B 81 SHEET 4 B 6 THR B 144 CYS B 152 -1 O ASP B 149 N GLY B 68 SHEET 5 B 6 SER B 131 ILE B 138 -1 N VAL B 135 O ILE B 148 SHEET 6 B 6 GLN B 111 VAL B 113 -1 N VAL B 113 O GLU B 132 SSBOND 1 CYS A 91 CYS A 125 1555 1555 2.03 SSBOND 2 CYS B 91 CYS B 125 1555 1555 2.04 SITE 1 AC1 13 TYR A 70 ILE A 94 GLY A 99 VAL A 100 SITE 2 AC1 13 CYS A 101 HIS A 122 ILE A 123 CYS A 125 SITE 3 AC1 13 GLU A 132 ASP A 149 ASP A 151 HOH A 182 SITE 4 AC1 13 HOH A 201 SITE 1 AC2 13 TYR B 70 ILE B 94 GLY B 99 VAL B 100 SITE 2 AC2 13 CYS B 101 HIS B 122 ILE B 123 CYS B 125 SITE 3 AC2 13 GLU B 132 ASP B 149 ASP B 151 HOH B 206 SITE 4 AC2 13 HOH B 235 CRYST1 73.548 73.548 163.560 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013597 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013597 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006114 0.00000