data_3KPD # _entry.id 3KPD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3KPD pdb_00003kpd 10.2210/pdb3kpd/pdb RCSB RCSB056279 ? ? WWPDB D_1000056279 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-01-12 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3KPD _pdbx_database_status.recvd_initial_deposition_date 2009-11-16 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3KPB . unspecified PDB 3KPC . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lucas, M.' 1 'Oyenarte, I.' 2 'Garcia, I.G.' 3 'Arribas, E.A.' 4 'Encinar, J.A.' 5 'Kortazar, D.' 6 'Fernandez, J.A.' 7 'Mato, J.M.' 8 'Martinez-Chantar, M.L.' 9 'Martinez-Cruz, L.A.' 10 # _citation.id primary _citation.title ;Binding of S-Methyl-5'-Thioadenosine and S-Adenosyl-l-Methionine to Protein MJ0100 Triggers an Open-to-Closed Conformational Change in Its CBS Motif Pair. ; _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 396 _citation.page_first 800 _citation.page_last 820 _citation.year 2010 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20026078 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2009.12.012 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lucas, M.' 1 ? primary 'Encinar, J.A.' 2 ? primary 'Arribas, E.A.' 3 ? primary 'Oyenarte, I.' 4 ? primary 'Garcia, I.G.' 5 ? primary 'Kortazar, D.' 6 ? primary 'Fernandez, J.A.' 7 ? primary 'Mato, J.M.' 8 ? primary 'Martinez-Chantar, M.L.' 9 ? primary 'Martinez-Cruz, L.A.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Uncharacterized protein MJ0100' 13535.766 4 ? ? ? ? 2 non-polymer syn "5'-DEOXY-5'-METHYLTHIOADENOSINE" 297.334 5 ? ? ? ? 3 non-polymer syn S-ADENOSYLMETHIONINE 398.437 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;TLVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNKKTIEEIMTRNVITAHEDEP VDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFGGKK ; _entity_poly.pdbx_seq_one_letter_code_can ;TLVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNKKTIEEIMTRNVITAHEDEP VDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFGGKK ; _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "5'-DEOXY-5'-METHYLTHIOADENOSINE" MTA 3 S-ADENOSYLMETHIONINE SAM # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 LEU n 1 3 VAL n 1 4 LYS n 1 5 ASP n 1 6 ILE n 1 7 LEU n 1 8 SER n 1 9 LYS n 1 10 PRO n 1 11 PRO n 1 12 ILE n 1 13 THR n 1 14 ALA n 1 15 HIS n 1 16 SER n 1 17 ASN n 1 18 ILE n 1 19 SER n 1 20 ILE n 1 21 MET n 1 22 GLU n 1 23 ALA n 1 24 ALA n 1 25 LYS n 1 26 ILE n 1 27 LEU n 1 28 ILE n 1 29 LYS n 1 30 HIS n 1 31 ASN n 1 32 ILE n 1 33 ASN n 1 34 HIS n 1 35 LEU n 1 36 PRO n 1 37 ILE n 1 38 VAL n 1 39 ASP n 1 40 GLU n 1 41 HIS n 1 42 GLY n 1 43 LYS n 1 44 LEU n 1 45 VAL n 1 46 GLY n 1 47 ILE n 1 48 ILE n 1 49 THR n 1 50 SER n 1 51 TRP n 1 52 ASP n 1 53 ILE n 1 54 ALA n 1 55 LYS n 1 56 ALA n 1 57 LEU n 1 58 ALA n 1 59 GLN n 1 60 ASN n 1 61 LYS n 1 62 LYS n 1 63 THR n 1 64 ILE n 1 65 GLU n 1 66 GLU n 1 67 ILE n 1 68 MET n 1 69 THR n 1 70 ARG n 1 71 ASN n 1 72 VAL n 1 73 ILE n 1 74 THR n 1 75 ALA n 1 76 HIS n 1 77 GLU n 1 78 ASP n 1 79 GLU n 1 80 PRO n 1 81 VAL n 1 82 ASP n 1 83 HIS n 1 84 VAL n 1 85 ALA n 1 86 ILE n 1 87 LYS n 1 88 MET n 1 89 SER n 1 90 LYS n 1 91 TYR n 1 92 ASN n 1 93 ILE n 1 94 SER n 1 95 GLY n 1 96 VAL n 1 97 PRO n 1 98 VAL n 1 99 VAL n 1 100 ASP n 1 101 ASP n 1 102 TYR n 1 103 ARG n 1 104 ARG n 1 105 VAL n 1 106 VAL n 1 107 GLY n 1 108 ILE n 1 109 VAL n 1 110 THR n 1 111 SER n 1 112 GLU n 1 113 ASP n 1 114 ILE n 1 115 SER n 1 116 ARG n 1 117 LEU n 1 118 PHE n 1 119 GLY n 1 120 GLY n 1 121 LYS n 1 122 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Methanococcus jannaschii' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene MJ0100 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Methanocaldococcus jannaschii' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2190 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET101D _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MTA non-polymer . "5'-DEOXY-5'-METHYLTHIOADENOSINE" ? 'C11 H15 N5 O3 S' 297.334 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SAM non-polymer . S-ADENOSYLMETHIONINE ? 'C15 H22 N6 O5 S' 398.437 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 388 388 THR THR A . n A 1 2 LEU 2 389 389 LEU LEU A . n A 1 3 VAL 3 390 390 VAL VAL A . n A 1 4 LYS 4 391 391 LYS LYS A . n A 1 5 ASP 5 392 392 ASP ASP A . n A 1 6 ILE 6 393 393 ILE ILE A . n A 1 7 LEU 7 394 394 LEU LEU A . n A 1 8 SER 8 395 395 SER SER A . n A 1 9 LYS 9 396 396 LYS LYS A . n A 1 10 PRO 10 397 397 PRO PRO A . n A 1 11 PRO 11 398 398 PRO PRO A . n A 1 12 ILE 12 399 399 ILE ILE A . n A 1 13 THR 13 400 400 THR THR A . n A 1 14 ALA 14 401 401 ALA ALA A . n A 1 15 HIS 15 402 402 HIS HIS A . n A 1 16 SER 16 403 403 SER SER A . n A 1 17 ASN 17 404 404 ASN ASN A . n A 1 18 ILE 18 405 405 ILE ILE A . n A 1 19 SER 19 406 406 SER SER A . n A 1 20 ILE 20 407 407 ILE ILE A . n A 1 21 MET 21 408 408 MET MET A . n A 1 22 GLU 22 409 409 GLU GLU A . n A 1 23 ALA 23 410 410 ALA ALA A . n A 1 24 ALA 24 411 411 ALA ALA A . n A 1 25 LYS 25 412 412 LYS LYS A . n A 1 26 ILE 26 413 413 ILE ILE A . n A 1 27 LEU 27 414 414 LEU LEU A . n A 1 28 ILE 28 415 415 ILE ILE A . n A 1 29 LYS 29 416 416 LYS LYS A . n A 1 30 HIS 30 417 417 HIS HIS A . n A 1 31 ASN 31 418 418 ASN ASN A . n A 1 32 ILE 32 419 419 ILE ILE A . n A 1 33 ASN 33 420 420 ASN ASN A . n A 1 34 HIS 34 421 421 HIS HIS A . n A 1 35 LEU 35 422 422 LEU LEU A . n A 1 36 PRO 36 423 423 PRO PRO A . n A 1 37 ILE 37 424 424 ILE ILE A . n A 1 38 VAL 38 425 425 VAL VAL A . n A 1 39 ASP 39 426 426 ASP ASP A . n A 1 40 GLU 40 427 427 GLU GLU A . n A 1 41 HIS 41 428 428 HIS HIS A . n A 1 42 GLY 42 429 429 GLY GLY A . n A 1 43 LYS 43 430 430 LYS LYS A . n A 1 44 LEU 44 431 431 LEU LEU A . n A 1 45 VAL 45 432 432 VAL VAL A . n A 1 46 GLY 46 433 433 GLY GLY A . n A 1 47 ILE 47 434 434 ILE ILE A . n A 1 48 ILE 48 435 435 ILE ILE A . n A 1 49 THR 49 436 436 THR THR A . n A 1 50 SER 50 437 437 SER SER A . n A 1 51 TRP 51 438 438 TRP TRP A . n A 1 52 ASP 52 439 439 ASP ASP A . n A 1 53 ILE 53 440 440 ILE ILE A . n A 1 54 ALA 54 441 441 ALA ALA A . n A 1 55 LYS 55 442 442 LYS LYS A . n A 1 56 ALA 56 443 443 ALA ALA A . n A 1 57 LEU 57 444 444 LEU LEU A . n A 1 58 ALA 58 445 445 ALA ALA A . n A 1 59 GLN 59 446 446 GLN GLN A . n A 1 60 ASN 60 447 447 ASN ASN A . n A 1 61 LYS 61 448 448 LYS LYS A . n A 1 62 LYS 62 449 449 LYS LYS A . n A 1 63 THR 63 450 450 THR THR A . n A 1 64 ILE 64 451 451 ILE ILE A . n A 1 65 GLU 65 452 452 GLU GLU A . n A 1 66 GLU 66 453 453 GLU GLU A . n A 1 67 ILE 67 454 454 ILE ILE A . n A 1 68 MET 68 455 455 MET MET A . n A 1 69 THR 69 456 456 THR THR A . n A 1 70 ARG 70 457 457 ARG ARG A . n A 1 71 ASN 71 458 458 ASN ASN A . n A 1 72 VAL 72 459 459 VAL VAL A . n A 1 73 ILE 73 460 460 ILE ILE A . n A 1 74 THR 74 461 461 THR THR A . n A 1 75 ALA 75 462 462 ALA ALA A . n A 1 76 HIS 76 463 463 HIS HIS A . n A 1 77 GLU 77 464 464 GLU GLU A . n A 1 78 ASP 78 465 465 ASP ASP A . n A 1 79 GLU 79 466 466 GLU GLU A . n A 1 80 PRO 80 467 467 PRO PRO A . n A 1 81 VAL 81 468 468 VAL VAL A . n A 1 82 ASP 82 469 469 ASP ASP A . n A 1 83 HIS 83 470 470 HIS HIS A . n A 1 84 VAL 84 471 471 VAL VAL A . n A 1 85 ALA 85 472 472 ALA ALA A . n A 1 86 ILE 86 473 473 ILE ILE A . n A 1 87 LYS 87 474 474 LYS LYS A . n A 1 88 MET 88 475 475 MET MET A . n A 1 89 SER 89 476 476 SER SER A . n A 1 90 LYS 90 477 477 LYS LYS A . n A 1 91 TYR 91 478 478 TYR TYR A . n A 1 92 ASN 92 479 479 ASN ASN A . n A 1 93 ILE 93 480 480 ILE ILE A . n A 1 94 SER 94 481 481 SER SER A . n A 1 95 GLY 95 482 482 GLY GLY A . n A 1 96 VAL 96 483 483 VAL VAL A . n A 1 97 PRO 97 484 484 PRO PRO A . n A 1 98 VAL 98 485 485 VAL VAL A . n A 1 99 VAL 99 486 486 VAL VAL A . n A 1 100 ASP 100 487 487 ASP ASP A . n A 1 101 ASP 101 488 488 ASP ASP A . n A 1 102 TYR 102 489 489 TYR TYR A . n A 1 103 ARG 103 490 490 ARG ARG A . n A 1 104 ARG 104 491 491 ARG ARG A . n A 1 105 VAL 105 492 492 VAL VAL A . n A 1 106 VAL 106 493 493 VAL VAL A . n A 1 107 GLY 107 494 494 GLY GLY A . n A 1 108 ILE 108 495 495 ILE ILE A . n A 1 109 VAL 109 496 496 VAL VAL A . n A 1 110 THR 110 497 497 THR THR A . n A 1 111 SER 111 498 498 SER SER A . n A 1 112 GLU 112 499 499 GLU GLU A . n A 1 113 ASP 113 500 500 ASP ASP A . n A 1 114 ILE 114 501 501 ILE ILE A . n A 1 115 SER 115 502 502 SER SER A . n A 1 116 ARG 116 503 503 ARG ARG A . n A 1 117 LEU 117 504 504 LEU LEU A . n A 1 118 PHE 118 505 505 PHE PHE A . n A 1 119 GLY 119 506 506 GLY GLY A . n A 1 120 GLY 120 507 ? ? ? A . n A 1 121 LYS 121 508 ? ? ? A . n A 1 122 LYS 122 509 ? ? ? A . n B 1 1 THR 1 388 388 THR THR B . n B 1 2 LEU 2 389 389 LEU LEU B . n B 1 3 VAL 3 390 390 VAL VAL B . n B 1 4 LYS 4 391 391 LYS LYS B . n B 1 5 ASP 5 392 392 ASP ASP B . n B 1 6 ILE 6 393 393 ILE ILE B . n B 1 7 LEU 7 394 394 LEU LEU B . n B 1 8 SER 8 395 395 SER SER B . n B 1 9 LYS 9 396 396 LYS LYS B . n B 1 10 PRO 10 397 397 PRO PRO B . n B 1 11 PRO 11 398 398 PRO PRO B . n B 1 12 ILE 12 399 399 ILE ILE B . n B 1 13 THR 13 400 400 THR THR B . n B 1 14 ALA 14 401 401 ALA ALA B . n B 1 15 HIS 15 402 402 HIS HIS B . n B 1 16 SER 16 403 403 SER SER B . n B 1 17 ASN 17 404 404 ASN ASN B . n B 1 18 ILE 18 405 405 ILE ILE B . n B 1 19 SER 19 406 406 SER SER B . n B 1 20 ILE 20 407 407 ILE ILE B . n B 1 21 MET 21 408 408 MET MET B . n B 1 22 GLU 22 409 409 GLU GLU B . n B 1 23 ALA 23 410 410 ALA ALA B . n B 1 24 ALA 24 411 411 ALA ALA B . n B 1 25 LYS 25 412 412 LYS LYS B . n B 1 26 ILE 26 413 413 ILE ILE B . n B 1 27 LEU 27 414 414 LEU LEU B . n B 1 28 ILE 28 415 415 ILE ILE B . n B 1 29 LYS 29 416 416 LYS LYS B . n B 1 30 HIS 30 417 417 HIS HIS B . n B 1 31 ASN 31 418 418 ASN ASN B . n B 1 32 ILE 32 419 419 ILE ILE B . n B 1 33 ASN 33 420 420 ASN ASN B . n B 1 34 HIS 34 421 421 HIS HIS B . n B 1 35 LEU 35 422 422 LEU LEU B . n B 1 36 PRO 36 423 423 PRO PRO B . n B 1 37 ILE 37 424 424 ILE ILE B . n B 1 38 VAL 38 425 425 VAL VAL B . n B 1 39 ASP 39 426 426 ASP ASP B . n B 1 40 GLU 40 427 427 GLU GLU B . n B 1 41 HIS 41 428 428 HIS HIS B . n B 1 42 GLY 42 429 429 GLY GLY B . n B 1 43 LYS 43 430 430 LYS LYS B . n B 1 44 LEU 44 431 431 LEU LEU B . n B 1 45 VAL 45 432 432 VAL VAL B . n B 1 46 GLY 46 433 433 GLY GLY B . n B 1 47 ILE 47 434 434 ILE ILE B . n B 1 48 ILE 48 435 435 ILE ILE B . n B 1 49 THR 49 436 436 THR THR B . n B 1 50 SER 50 437 437 SER SER B . n B 1 51 TRP 51 438 438 TRP TRP B . n B 1 52 ASP 52 439 439 ASP ASP B . n B 1 53 ILE 53 440 440 ILE ILE B . n B 1 54 ALA 54 441 441 ALA ALA B . n B 1 55 LYS 55 442 442 LYS LYS B . n B 1 56 ALA 56 443 443 ALA ALA B . n B 1 57 LEU 57 444 444 LEU LEU B . n B 1 58 ALA 58 445 445 ALA ALA B . n B 1 59 GLN 59 446 446 GLN GLN B . n B 1 60 ASN 60 447 447 ASN ASN B . n B 1 61 LYS 61 448 448 LYS LYS B . n B 1 62 LYS 62 449 449 LYS LYS B . n B 1 63 THR 63 450 450 THR THR B . n B 1 64 ILE 64 451 451 ILE ILE B . n B 1 65 GLU 65 452 452 GLU GLU B . n B 1 66 GLU 66 453 453 GLU GLU B . n B 1 67 ILE 67 454 454 ILE ILE B . n B 1 68 MET 68 455 455 MET MET B . n B 1 69 THR 69 456 456 THR THR B . n B 1 70 ARG 70 457 457 ARG ARG B . n B 1 71 ASN 71 458 458 ASN ASN B . n B 1 72 VAL 72 459 459 VAL VAL B . n B 1 73 ILE 73 460 460 ILE ILE B . n B 1 74 THR 74 461 461 THR THR B . n B 1 75 ALA 75 462 462 ALA ALA B . n B 1 76 HIS 76 463 463 HIS HIS B . n B 1 77 GLU 77 464 464 GLU GLU B . n B 1 78 ASP 78 465 465 ASP ASP B . n B 1 79 GLU 79 466 466 GLU GLU B . n B 1 80 PRO 80 467 467 PRO PRO B . n B 1 81 VAL 81 468 468 VAL VAL B . n B 1 82 ASP 82 469 469 ASP ASP B . n B 1 83 HIS 83 470 470 HIS HIS B . n B 1 84 VAL 84 471 471 VAL VAL B . n B 1 85 ALA 85 472 472 ALA ALA B . n B 1 86 ILE 86 473 473 ILE ILE B . n B 1 87 LYS 87 474 474 LYS LYS B . n B 1 88 MET 88 475 475 MET MET B . n B 1 89 SER 89 476 476 SER SER B . n B 1 90 LYS 90 477 477 LYS LYS B . n B 1 91 TYR 91 478 478 TYR TYR B . n B 1 92 ASN 92 479 479 ASN ASN B . n B 1 93 ILE 93 480 480 ILE ILE B . n B 1 94 SER 94 481 481 SER SER B . n B 1 95 GLY 95 482 482 GLY GLY B . n B 1 96 VAL 96 483 483 VAL VAL B . n B 1 97 PRO 97 484 484 PRO PRO B . n B 1 98 VAL 98 485 485 VAL VAL B . n B 1 99 VAL 99 486 486 VAL VAL B . n B 1 100 ASP 100 487 487 ASP ASP B . n B 1 101 ASP 101 488 488 ASP ASP B . n B 1 102 TYR 102 489 489 TYR TYR B . n B 1 103 ARG 103 490 490 ARG ARG B . n B 1 104 ARG 104 491 491 ARG ARG B . n B 1 105 VAL 105 492 492 VAL VAL B . n B 1 106 VAL 106 493 493 VAL VAL B . n B 1 107 GLY 107 494 494 GLY GLY B . n B 1 108 ILE 108 495 495 ILE ILE B . n B 1 109 VAL 109 496 496 VAL VAL B . n B 1 110 THR 110 497 497 THR THR B . n B 1 111 SER 111 498 498 SER SER B . n B 1 112 GLU 112 499 499 GLU GLU B . n B 1 113 ASP 113 500 500 ASP ASP B . n B 1 114 ILE 114 501 501 ILE ILE B . n B 1 115 SER 115 502 502 SER SER B . n B 1 116 ARG 116 503 503 ARG ARG B . n B 1 117 LEU 117 504 504 LEU LEU B . n B 1 118 PHE 118 505 505 PHE PHE B . n B 1 119 GLY 119 506 506 GLY GLY B . n B 1 120 GLY 120 507 507 GLY GLY B . n B 1 121 LYS 121 508 508 LYS LYS B . n B 1 122 LYS 122 509 ? ? ? B . n C 1 1 THR 1 388 388 THR THR C . n C 1 2 LEU 2 389 389 LEU LEU C . n C 1 3 VAL 3 390 390 VAL VAL C . n C 1 4 LYS 4 391 391 LYS LYS C . n C 1 5 ASP 5 392 392 ASP ASP C . n C 1 6 ILE 6 393 393 ILE ILE C . n C 1 7 LEU 7 394 394 LEU LEU C . n C 1 8 SER 8 395 395 SER SER C . n C 1 9 LYS 9 396 396 LYS LYS C . n C 1 10 PRO 10 397 397 PRO PRO C . n C 1 11 PRO 11 398 398 PRO PRO C . n C 1 12 ILE 12 399 399 ILE ILE C . n C 1 13 THR 13 400 400 THR THR C . n C 1 14 ALA 14 401 401 ALA ALA C . n C 1 15 HIS 15 402 402 HIS HIS C . n C 1 16 SER 16 403 403 SER SER C . n C 1 17 ASN 17 404 404 ASN ASN C . n C 1 18 ILE 18 405 405 ILE ILE C . n C 1 19 SER 19 406 406 SER SER C . n C 1 20 ILE 20 407 407 ILE ILE C . n C 1 21 MET 21 408 408 MET MET C . n C 1 22 GLU 22 409 409 GLU GLU C . n C 1 23 ALA 23 410 410 ALA ALA C . n C 1 24 ALA 24 411 411 ALA ALA C . n C 1 25 LYS 25 412 412 LYS LYS C . n C 1 26 ILE 26 413 413 ILE ILE C . n C 1 27 LEU 27 414 414 LEU LEU C . n C 1 28 ILE 28 415 415 ILE ILE C . n C 1 29 LYS 29 416 416 LYS LYS C . n C 1 30 HIS 30 417 417 HIS HIS C . n C 1 31 ASN 31 418 418 ASN ASN C . n C 1 32 ILE 32 419 419 ILE ILE C . n C 1 33 ASN 33 420 420 ASN ASN C . n C 1 34 HIS 34 421 421 HIS HIS C . n C 1 35 LEU 35 422 422 LEU LEU C . n C 1 36 PRO 36 423 423 PRO PRO C . n C 1 37 ILE 37 424 424 ILE ILE C . n C 1 38 VAL 38 425 425 VAL VAL C . n C 1 39 ASP 39 426 426 ASP ASP C . n C 1 40 GLU 40 427 427 GLU GLU C . n C 1 41 HIS 41 428 428 HIS HIS C . n C 1 42 GLY 42 429 429 GLY GLY C . n C 1 43 LYS 43 430 430 LYS LYS C . n C 1 44 LEU 44 431 431 LEU LEU C . n C 1 45 VAL 45 432 432 VAL VAL C . n C 1 46 GLY 46 433 433 GLY GLY C . n C 1 47 ILE 47 434 434 ILE ILE C . n C 1 48 ILE 48 435 435 ILE ILE C . n C 1 49 THR 49 436 436 THR THR C . n C 1 50 SER 50 437 437 SER SER C . n C 1 51 TRP 51 438 438 TRP TRP C . n C 1 52 ASP 52 439 439 ASP ASP C . n C 1 53 ILE 53 440 440 ILE ILE C . n C 1 54 ALA 54 441 441 ALA ALA C . n C 1 55 LYS 55 442 442 LYS LYS C . n C 1 56 ALA 56 443 443 ALA ALA C . n C 1 57 LEU 57 444 444 LEU LEU C . n C 1 58 ALA 58 445 445 ALA ALA C . n C 1 59 GLN 59 446 446 GLN GLN C . n C 1 60 ASN 60 447 447 ASN ASN C . n C 1 61 LYS 61 448 448 LYS LYS C . n C 1 62 LYS 62 449 449 LYS LYS C . n C 1 63 THR 63 450 450 THR THR C . n C 1 64 ILE 64 451 451 ILE ILE C . n C 1 65 GLU 65 452 452 GLU GLU C . n C 1 66 GLU 66 453 453 GLU GLU C . n C 1 67 ILE 67 454 454 ILE ILE C . n C 1 68 MET 68 455 455 MET MET C . n C 1 69 THR 69 456 456 THR THR C . n C 1 70 ARG 70 457 457 ARG ARG C . n C 1 71 ASN 71 458 458 ASN ASN C . n C 1 72 VAL 72 459 459 VAL VAL C . n C 1 73 ILE 73 460 460 ILE ILE C . n C 1 74 THR 74 461 461 THR THR C . n C 1 75 ALA 75 462 462 ALA ALA C . n C 1 76 HIS 76 463 463 HIS HIS C . n C 1 77 GLU 77 464 464 GLU GLU C . n C 1 78 ASP 78 465 465 ASP ASP C . n C 1 79 GLU 79 466 466 GLU GLU C . n C 1 80 PRO 80 467 467 PRO PRO C . n C 1 81 VAL 81 468 468 VAL VAL C . n C 1 82 ASP 82 469 469 ASP ASP C . n C 1 83 HIS 83 470 470 HIS HIS C . n C 1 84 VAL 84 471 471 VAL VAL C . n C 1 85 ALA 85 472 472 ALA ALA C . n C 1 86 ILE 86 473 473 ILE ILE C . n C 1 87 LYS 87 474 474 LYS LYS C . n C 1 88 MET 88 475 475 MET MET C . n C 1 89 SER 89 476 476 SER SER C . n C 1 90 LYS 90 477 477 LYS LYS C . n C 1 91 TYR 91 478 478 TYR TYR C . n C 1 92 ASN 92 479 479 ASN ASN C . n C 1 93 ILE 93 480 480 ILE ILE C . n C 1 94 SER 94 481 481 SER SER C . n C 1 95 GLY 95 482 482 GLY GLY C . n C 1 96 VAL 96 483 483 VAL VAL C . n C 1 97 PRO 97 484 484 PRO PRO C . n C 1 98 VAL 98 485 485 VAL VAL C . n C 1 99 VAL 99 486 486 VAL VAL C . n C 1 100 ASP 100 487 487 ASP ASP C . n C 1 101 ASP 101 488 488 ASP ASP C . n C 1 102 TYR 102 489 489 TYR TYR C . n C 1 103 ARG 103 490 490 ARG ARG C . n C 1 104 ARG 104 491 491 ARG ARG C . n C 1 105 VAL 105 492 492 VAL VAL C . n C 1 106 VAL 106 493 493 VAL VAL C . n C 1 107 GLY 107 494 494 GLY GLY C . n C 1 108 ILE 108 495 495 ILE ILE C . n C 1 109 VAL 109 496 496 VAL VAL C . n C 1 110 THR 110 497 497 THR THR C . n C 1 111 SER 111 498 498 SER SER C . n C 1 112 GLU 112 499 499 GLU GLU C . n C 1 113 ASP 113 500 500 ASP ASP C . n C 1 114 ILE 114 501 501 ILE ILE C . n C 1 115 SER 115 502 502 SER SER C . n C 1 116 ARG 116 503 503 ARG ARG C . n C 1 117 LEU 117 504 504 LEU LEU C . n C 1 118 PHE 118 505 505 PHE PHE C . n C 1 119 GLY 119 506 506 GLY GLY C . n C 1 120 GLY 120 507 ? ? ? C . n C 1 121 LYS 121 508 ? ? ? C . n C 1 122 LYS 122 509 ? ? ? C . n D 1 1 THR 1 388 388 THR THR D . n D 1 2 LEU 2 389 389 LEU LEU D . n D 1 3 VAL 3 390 390 VAL VAL D . n D 1 4 LYS 4 391 391 LYS LYS D . n D 1 5 ASP 5 392 392 ASP ASP D . n D 1 6 ILE 6 393 393 ILE ILE D . n D 1 7 LEU 7 394 394 LEU LEU D . n D 1 8 SER 8 395 395 SER SER D . n D 1 9 LYS 9 396 396 LYS LYS D . n D 1 10 PRO 10 397 397 PRO PRO D . n D 1 11 PRO 11 398 398 PRO PRO D . n D 1 12 ILE 12 399 399 ILE ILE D . n D 1 13 THR 13 400 400 THR THR D . n D 1 14 ALA 14 401 401 ALA ALA D . n D 1 15 HIS 15 402 402 HIS HIS D . n D 1 16 SER 16 403 403 SER SER D . n D 1 17 ASN 17 404 404 ASN ASN D . n D 1 18 ILE 18 405 405 ILE ILE D . n D 1 19 SER 19 406 406 SER SER D . n D 1 20 ILE 20 407 407 ILE ILE D . n D 1 21 MET 21 408 408 MET MET D . n D 1 22 GLU 22 409 409 GLU GLU D . n D 1 23 ALA 23 410 410 ALA ALA D . n D 1 24 ALA 24 411 411 ALA ALA D . n D 1 25 LYS 25 412 412 LYS LYS D . n D 1 26 ILE 26 413 413 ILE ILE D . n D 1 27 LEU 27 414 414 LEU LEU D . n D 1 28 ILE 28 415 415 ILE ILE D . n D 1 29 LYS 29 416 416 LYS LYS D . n D 1 30 HIS 30 417 417 HIS HIS D . n D 1 31 ASN 31 418 418 ASN ASN D . n D 1 32 ILE 32 419 419 ILE ILE D . n D 1 33 ASN 33 420 420 ASN ASN D . n D 1 34 HIS 34 421 421 HIS HIS D . n D 1 35 LEU 35 422 422 LEU LEU D . n D 1 36 PRO 36 423 423 PRO PRO D . n D 1 37 ILE 37 424 424 ILE ILE D . n D 1 38 VAL 38 425 425 VAL VAL D . n D 1 39 ASP 39 426 426 ASP ASP D . n D 1 40 GLU 40 427 427 GLU GLU D . n D 1 41 HIS 41 428 428 HIS HIS D . n D 1 42 GLY 42 429 429 GLY GLY D . n D 1 43 LYS 43 430 430 LYS LYS D . n D 1 44 LEU 44 431 431 LEU LEU D . n D 1 45 VAL 45 432 432 VAL VAL D . n D 1 46 GLY 46 433 433 GLY GLY D . n D 1 47 ILE 47 434 434 ILE ILE D . n D 1 48 ILE 48 435 435 ILE ILE D . n D 1 49 THR 49 436 436 THR THR D . n D 1 50 SER 50 437 437 SER SER D . n D 1 51 TRP 51 438 438 TRP TRP D . n D 1 52 ASP 52 439 439 ASP ASP D . n D 1 53 ILE 53 440 440 ILE ILE D . n D 1 54 ALA 54 441 441 ALA ALA D . n D 1 55 LYS 55 442 442 LYS LYS D . n D 1 56 ALA 56 443 443 ALA ALA D . n D 1 57 LEU 57 444 444 LEU LEU D . n D 1 58 ALA 58 445 445 ALA ALA D . n D 1 59 GLN 59 446 446 GLN GLN D . n D 1 60 ASN 60 447 447 ASN ASN D . n D 1 61 LYS 61 448 448 LYS LYS D . n D 1 62 LYS 62 449 449 LYS LYS D . n D 1 63 THR 63 450 450 THR THR D . n D 1 64 ILE 64 451 451 ILE ILE D . n D 1 65 GLU 65 452 452 GLU GLU D . n D 1 66 GLU 66 453 453 GLU GLU D . n D 1 67 ILE 67 454 454 ILE ILE D . n D 1 68 MET 68 455 455 MET MET D . n D 1 69 THR 69 456 456 THR THR D . n D 1 70 ARG 70 457 457 ARG ARG D . n D 1 71 ASN 71 458 458 ASN ASN D . n D 1 72 VAL 72 459 459 VAL VAL D . n D 1 73 ILE 73 460 460 ILE ILE D . n D 1 74 THR 74 461 461 THR THR D . n D 1 75 ALA 75 462 462 ALA ALA D . n D 1 76 HIS 76 463 463 HIS HIS D . n D 1 77 GLU 77 464 464 GLU GLU D . n D 1 78 ASP 78 465 465 ASP ASP D . n D 1 79 GLU 79 466 466 GLU GLU D . n D 1 80 PRO 80 467 467 PRO PRO D . n D 1 81 VAL 81 468 468 VAL VAL D . n D 1 82 ASP 82 469 469 ASP ASP D . n D 1 83 HIS 83 470 470 HIS HIS D . n D 1 84 VAL 84 471 471 VAL VAL D . n D 1 85 ALA 85 472 472 ALA ALA D . n D 1 86 ILE 86 473 473 ILE ILE D . n D 1 87 LYS 87 474 474 LYS LYS D . n D 1 88 MET 88 475 475 MET MET D . n D 1 89 SER 89 476 476 SER SER D . n D 1 90 LYS 90 477 477 LYS LYS D . n D 1 91 TYR 91 478 478 TYR TYR D . n D 1 92 ASN 92 479 479 ASN ASN D . n D 1 93 ILE 93 480 480 ILE ILE D . n D 1 94 SER 94 481 481 SER SER D . n D 1 95 GLY 95 482 482 GLY GLY D . n D 1 96 VAL 96 483 483 VAL VAL D . n D 1 97 PRO 97 484 484 PRO PRO D . n D 1 98 VAL 98 485 485 VAL VAL D . n D 1 99 VAL 99 486 486 VAL VAL D . n D 1 100 ASP 100 487 487 ASP ASP D . n D 1 101 ASP 101 488 488 ASP ASP D . n D 1 102 TYR 102 489 489 TYR TYR D . n D 1 103 ARG 103 490 490 ARG ARG D . n D 1 104 ARG 104 491 491 ARG ARG D . n D 1 105 VAL 105 492 492 VAL VAL D . n D 1 106 VAL 106 493 493 VAL VAL D . n D 1 107 GLY 107 494 494 GLY GLY D . n D 1 108 ILE 108 495 495 ILE ILE D . n D 1 109 VAL 109 496 496 VAL VAL D . n D 1 110 THR 110 497 497 THR THR D . n D 1 111 SER 111 498 498 SER SER D . n D 1 112 GLU 112 499 499 GLU GLU D . n D 1 113 ASP 113 500 500 ASP ASP D . n D 1 114 ILE 114 501 501 ILE ILE D . n D 1 115 SER 115 502 502 SER SER D . n D 1 116 ARG 116 503 503 ARG ARG D . n D 1 117 LEU 117 504 504 LEU LEU D . n D 1 118 PHE 118 505 505 PHE PHE D . n D 1 119 GLY 119 506 506 GLY GLY D . n D 1 120 GLY 120 507 ? ? ? D . n D 1 121 LYS 121 508 ? ? ? D . n D 1 122 LYS 122 509 ? ? ? D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MTA 1 1 1 MTA MTA A . F 2 MTA 1 2 2 MTA MTA A . G 3 SAM 1 1000 1000 SAM SAM B . H 3 SAM 1 1000 1000 SAM SAM C . I 2 MTA 1 1 1 MTA MTA C . J 2 MTA 1 1 1 MTA MTA D . K 2 MTA 1 2 2 MTA MTA D . # _software.name REFMAC _software.classification refinement _software.version 5.5.0072 _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 3KPD _cell.length_a 58.671 _cell.length_b 165.794 _cell.length_c 122.997 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3KPD _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3KPD _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.76 _exptl_crystal.density_percent_sol 55.47 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.6 _exptl_crystal_grow.pdbx_details '10% PEG 6000, 0.1 M TRIS pH 8.6, VAPOR DIFFUSION, HANGING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector ? _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 2009-09-19 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9790 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID23-1' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID23-1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9790 # _reflns.entry_id 3KPD _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 2.9 _reflns.number_obs 12845 _reflns.number_all 13555 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 3KPD _refine.ls_number_reflns_obs 12845 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 2.91 _refine.ls_percent_reflns_obs 99.57 _refine.ls_R_factor_obs 0.23880 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.23410 _refine.ls_R_factor_R_free 0.33430 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 670 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.922 _refine.correlation_coeff_Fo_to_Fc_free 0.827 _refine.B_iso_mean 58.955 _refine.aniso_B[1][1] 1.53 _refine.aniso_B[2][2] -4.08 _refine.aniso_B[3][3] 2.55 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.545 _refine.overall_SU_ML 0.420 _refine.overall_SU_B 21.163 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3733 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 154 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 3887 _refine_hist.d_res_high 2.91 _refine_hist.d_res_low . # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.022 ? 3965 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.607 2.006 ? 5400 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.020 5.000 ? 482 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 39.976 25.000 ? 144 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 21.096 15.000 ? 720 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 21.573 15.000 ? 16 'X-RAY DIFFRACTION' ? r_chiral_restr 0.105 0.200 ? 667 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.021 ? 2785 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.672 1.500 ? 2407 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.265 2.000 ? 3963 'X-RAY DIFFRACTION' ? r_scbond_it 1.562 3.000 ? 1558 'X-RAY DIFFRACTION' ? r_scangle_it 2.802 4.500 ? 1433 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.909 _refine_ls_shell.d_res_low 2.985 _refine_ls_shell.number_reflns_R_work 888 _refine_ls_shell.R_factor_R_work 0.251 _refine_ls_shell.percent_reflns_obs 95.18 _refine_ls_shell.R_factor_R_free 0.522 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 41 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3KPD _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3KPD _struct.title 'Crystal Structure of the CBS domain pair of protein MJ0100 in complex with 5 -methylthioadenosine and S-adenosyl-L-methionine.' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3KPD _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' _struct_keywords.text 'CBS domain; s-adenosylmethionine; conformational change, CBS domain, UNKNOWN FUNCTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 3 ? I N N 2 ? J N N 2 ? K N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Y100_METJA _struct_ref.pdbx_db_accession Q57564 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TLVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNKKTIEEIMTRNVITAHEDEP VDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFGGKK ; _struct_ref.pdbx_align_begin 388 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3KPD A 1 ? 122 ? Q57564 388 ? 509 ? 388 509 2 1 3KPD B 1 ? 122 ? Q57564 388 ? 509 ? 388 509 3 1 3KPD C 1 ? 122 ? Q57564 388 ? 509 ? 388 509 4 1 3KPD D 1 ? 122 ? Q57564 388 ? 509 ? 388 509 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 3 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4280 ? 1 MORE -20 ? 1 'SSA (A^2)' 12360 ? 2 'ABSA (A^2)' 3740 ? 2 MORE -25 ? 2 'SSA (A^2)' 11330 ? 3 'ABSA (A^2)' 4250 ? 3 MORE -13 ? 3 'SSA (A^2)' 12390 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 A,E,F 2 1 B,C,G,H,I 3 1,3 D,J,K # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_654 -x+1,y,-z-1/2 -1.0000000000 0.0000000000 0.0000000000 58.6710000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -61.4985000000 3 'crystal symmetry operation' 4_555 x,-y,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 2 ? ILE A 6 ? LEU A 389 ILE A 393 5 ? 5 HELX_P HELX_P2 2 SER A 19 ? ASN A 31 ? SER A 406 ASN A 418 1 ? 13 HELX_P HELX_P3 3 SER A 50 ? GLN A 59 ? SER A 437 GLN A 446 1 ? 10 HELX_P HELX_P4 4 PRO A 80 ? TYR A 91 ? PRO A 467 TYR A 478 1 ? 12 HELX_P HELX_P5 5 SER A 111 ? SER A 115 ? SER A 498 SER A 502 1 ? 5 HELX_P HELX_P6 6 SER B 19 ? HIS B 30 ? SER B 406 HIS B 417 1 ? 12 HELX_P HELX_P7 7 SER B 50 ? GLN B 59 ? SER B 437 GLN B 446 1 ? 10 HELX_P HELX_P8 8 THR B 63 ? MET B 68 ? THR B 450 MET B 455 1 ? 6 HELX_P HELX_P9 9 PRO B 80 ? ASN B 92 ? PRO B 467 ASN B 479 1 ? 13 HELX_P HELX_P10 10 SER B 111 ? LYS B 121 ? SER B 498 LYS B 508 1 ? 11 HELX_P HELX_P11 11 LEU C 2 ? LEU C 7 ? LEU C 389 LEU C 394 1 ? 6 HELX_P HELX_P12 12 SER C 19 ? HIS C 30 ? SER C 406 HIS C 417 1 ? 12 HELX_P HELX_P13 13 SER C 50 ? GLN C 59 ? SER C 437 GLN C 446 1 ? 10 HELX_P HELX_P14 14 PRO C 80 ? ASN C 92 ? PRO C 467 ASN C 479 1 ? 13 HELX_P HELX_P15 15 SER C 111 ? PHE C 118 ? SER C 498 PHE C 505 1 ? 8 HELX_P HELX_P16 16 SER D 19 ? HIS D 30 ? SER D 406 HIS D 417 1 ? 12 HELX_P HELX_P17 17 SER D 50 ? GLN D 59 ? SER D 437 GLN D 446 1 ? 10 HELX_P HELX_P18 18 THR D 63 ? MET D 68 ? THR D 450 MET D 455 1 ? 6 HELX_P HELX_P19 19 PRO D 80 ? ASN D 92 ? PRO D 467 ASN D 479 1 ? 13 HELX_P HELX_P20 20 SER D 111 ? ARG D 116 ? SER D 498 ARG D 503 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 3 ? C ? 2 ? D ? 3 ? E ? 2 ? F ? 2 ? G ? 3 ? H ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? parallel D 2 3 ? anti-parallel E 1 2 ? anti-parallel F 1 2 ? anti-parallel G 1 2 ? parallel G 2 3 ? anti-parallel H 1 2 ? parallel H 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 HIS A 34 ? VAL A 38 ? HIS A 421 VAL A 425 A 2 LEU A 44 ? THR A 49 ? LEU A 431 THR A 436 B 1 ALA A 75 ? HIS A 76 ? ALA A 462 HIS A 463 B 2 GLY A 95 ? VAL A 99 ? GLY A 482 VAL A 486 B 3 VAL A 105 ? THR A 110 ? VAL A 492 THR A 497 C 1 HIS B 34 ? VAL B 38 ? HIS B 421 VAL B 425 C 2 LEU B 44 ? THR B 49 ? LEU B 431 THR B 436 D 1 ALA B 75 ? HIS B 76 ? ALA B 462 HIS B 463 D 2 GLY B 95 ? VAL B 99 ? GLY B 482 VAL B 486 D 3 VAL B 105 ? THR B 110 ? VAL B 492 THR B 497 E 1 HIS C 34 ? VAL C 38 ? HIS C 421 VAL C 425 E 2 LEU C 44 ? THR C 49 ? LEU C 431 THR C 436 F 1 GLY C 95 ? VAL C 99 ? GLY C 482 VAL C 486 F 2 VAL C 105 ? THR C 110 ? VAL C 492 THR C 497 G 1 ALA D 14 ? HIS D 15 ? ALA D 401 HIS D 402 G 2 HIS D 34 ? VAL D 38 ? HIS D 421 VAL D 425 G 3 LEU D 44 ? THR D 49 ? LEU D 431 THR D 436 H 1 ALA D 75 ? HIS D 76 ? ALA D 462 HIS D 463 H 2 GLY D 95 ? VAL D 99 ? GLY D 482 VAL D 486 H 3 VAL D 105 ? THR D 110 ? VAL D 492 THR D 497 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 35 ? N LEU A 422 O ILE A 48 ? O ILE A 435 B 1 2 N ALA A 75 ? N ALA A 462 O PRO A 97 ? O PRO A 484 B 2 3 N VAL A 98 ? N VAL A 485 O GLY A 107 ? O GLY A 494 C 1 2 N ILE B 37 ? N ILE B 424 O GLY B 46 ? O GLY B 433 D 1 2 N ALA B 75 ? N ALA B 462 O VAL B 99 ? O VAL B 486 D 2 3 N VAL B 98 ? N VAL B 485 O VAL B 106 ? O VAL B 493 E 1 2 N LEU C 35 ? N LEU C 422 O ILE C 48 ? O ILE C 435 F 1 2 N VAL C 98 ? N VAL C 485 O GLY C 107 ? O GLY C 494 G 1 2 N ALA D 14 ? N ALA D 401 O VAL D 38 ? O VAL D 425 G 2 3 N LEU D 35 ? N LEU D 422 O ILE D 48 ? O ILE D 435 H 1 2 N ALA D 75 ? N ALA D 462 O VAL D 99 ? O VAL D 486 H 2 3 N VAL D 98 ? N VAL D 485 O GLY D 107 ? O GLY D 494 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B SAM 1000 ? 17 'BINDING SITE FOR RESIDUE SAM B 1000' AC2 Software C SAM 1000 ? 15 'BINDING SITE FOR RESIDUE SAM C 1000' AC3 Software A MTA 1 ? 10 'BINDING SITE FOR RESIDUE MTA A 1' AC4 Software A MTA 2 ? 10 'BINDING SITE FOR RESIDUE MTA A 2' AC5 Software C MTA 1 ? 14 'BINDING SITE FOR RESIDUE MTA C 1' AC6 Software D MTA 1 ? 11 'BINDING SITE FOR RESIDUE MTA D 1' AC7 Software D MTA 2 ? 12 'BINDING SITE FOR RESIDUE MTA D 2' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 17 THR B 49 ? THR B 436 . ? 1_555 ? 2 AC1 17 TRP B 51 ? TRP B 438 . ? 1_555 ? 3 AC1 17 ASP B 52 ? ASP B 439 . ? 1_555 ? 4 AC1 17 LYS B 55 ? LYS B 442 . ? 1_555 ? 5 AC1 17 THR B 69 ? THR B 456 . ? 1_555 ? 6 AC1 17 ASN B 71 ? ASN B 458 . ? 1_555 ? 7 AC1 17 VAL B 72 ? VAL B 459 . ? 1_555 ? 8 AC1 17 ILE B 73 ? ILE B 460 . ? 1_555 ? 9 AC1 17 ASN B 92 ? ASN B 479 . ? 1_555 ? 10 AC1 17 ILE B 93 ? ILE B 480 . ? 1_555 ? 11 AC1 17 SER B 94 ? SER B 481 . ? 1_555 ? 12 AC1 17 GLY B 95 ? GLY B 482 . ? 1_555 ? 13 AC1 17 PRO B 97 ? PRO B 484 . ? 1_555 ? 14 AC1 17 MTA I . ? MTA C 1 . ? 1_555 ? 15 AC1 17 ASN C 31 ? ASN C 418 . ? 1_555 ? 16 AC1 17 ASN C 33 ? ASN C 420 . ? 1_555 ? 17 AC1 17 GLU C 112 ? GLU C 499 . ? 1_555 ? 18 AC2 15 ASN B 31 ? ASN B 418 . ? 1_555 ? 19 AC2 15 ASN B 33 ? ASN B 420 . ? 1_555 ? 20 AC2 15 GLU B 112 ? GLU B 499 . ? 1_555 ? 21 AC2 15 TRP C 51 ? TRP C 438 . ? 1_555 ? 22 AC2 15 ASP C 52 ? ASP C 439 . ? 1_555 ? 23 AC2 15 THR C 69 ? THR C 456 . ? 1_555 ? 24 AC2 15 ASN C 71 ? ASN C 458 . ? 1_555 ? 25 AC2 15 VAL C 72 ? VAL C 459 . ? 1_555 ? 26 AC2 15 ILE C 73 ? ILE C 460 . ? 1_555 ? 27 AC2 15 ASN C 92 ? ASN C 479 . ? 1_555 ? 28 AC2 15 ILE C 93 ? ILE C 480 . ? 1_555 ? 29 AC2 15 SER C 94 ? SER C 481 . ? 1_555 ? 30 AC2 15 GLY C 95 ? GLY C 482 . ? 1_555 ? 31 AC2 15 VAL C 96 ? VAL C 483 . ? 1_555 ? 32 AC2 15 PRO C 97 ? PRO C 484 . ? 1_555 ? 33 AC3 10 SER A 8 ? SER A 395 . ? 1_555 ? 34 AC3 10 ILE A 12 ? ILE A 399 . ? 1_555 ? 35 AC3 10 ASN A 31 ? ASN A 418 . ? 1_555 ? 36 AC3 10 ILE A 32 ? ILE A 419 . ? 1_555 ? 37 AC3 10 HIS A 34 ? HIS A 421 . ? 1_555 ? 38 AC3 10 PRO A 36 ? PRO A 423 . ? 1_555 ? 39 AC3 10 ILE A 108 ? ILE A 495 . ? 1_555 ? 40 AC3 10 THR A 110 ? THR A 497 . ? 1_555 ? 41 AC3 10 GLU A 112 ? GLU A 499 . ? 1_555 ? 42 AC3 10 ASP A 113 ? ASP A 500 . ? 1_555 ? 43 AC4 10 ILE A 47 ? ILE A 434 . ? 1_555 ? 44 AC4 10 TRP A 51 ? TRP A 438 . ? 1_555 ? 45 AC4 10 ASP A 52 ? ASP A 439 . ? 1_555 ? 46 AC4 10 THR A 69 ? THR A 456 . ? 1_555 ? 47 AC4 10 ASN A 71 ? ASN A 458 . ? 1_555 ? 48 AC4 10 VAL A 72 ? VAL A 459 . ? 1_555 ? 49 AC4 10 ILE A 73 ? ILE A 460 . ? 1_555 ? 50 AC4 10 ASN A 92 ? ASN A 479 . ? 1_555 ? 51 AC4 10 ILE A 93 ? ILE A 480 . ? 1_555 ? 52 AC4 10 GLY A 95 ? GLY A 482 . ? 1_555 ? 53 AC5 14 SAM G . ? SAM B 1000 . ? 1_555 ? 54 AC5 14 SER C 8 ? SER C 395 . ? 1_555 ? 55 AC5 14 PRO C 10 ? PRO C 397 . ? 1_555 ? 56 AC5 14 PRO C 11 ? PRO C 398 . ? 1_555 ? 57 AC5 14 ILE C 12 ? ILE C 399 . ? 1_555 ? 58 AC5 14 ASN C 31 ? ASN C 418 . ? 1_555 ? 59 AC5 14 ILE C 32 ? ILE C 419 . ? 1_555 ? 60 AC5 14 ASN C 33 ? ASN C 420 . ? 1_555 ? 61 AC5 14 HIS C 34 ? HIS C 421 . ? 1_555 ? 62 AC5 14 PRO C 36 ? PRO C 423 . ? 1_555 ? 63 AC5 14 ILE C 108 ? ILE C 495 . ? 1_555 ? 64 AC5 14 THR C 110 ? THR C 497 . ? 1_555 ? 65 AC5 14 GLU C 112 ? GLU C 499 . ? 1_555 ? 66 AC5 14 ASP C 113 ? ASP C 500 . ? 1_555 ? 67 AC6 11 SER D 8 ? SER D 395 . ? 1_555 ? 68 AC6 11 PRO D 10 ? PRO D 397 . ? 1_555 ? 69 AC6 11 ILE D 12 ? ILE D 399 . ? 1_555 ? 70 AC6 11 ASN D 31 ? ASN D 418 . ? 1_555 ? 71 AC6 11 ILE D 32 ? ILE D 419 . ? 1_555 ? 72 AC6 11 HIS D 34 ? HIS D 421 . ? 1_555 ? 73 AC6 11 PRO D 36 ? PRO D 423 . ? 1_555 ? 74 AC6 11 ASN D 92 ? ASN D 479 . ? 4_555 ? 75 AC6 11 ILE D 108 ? ILE D 495 . ? 1_555 ? 76 AC6 11 THR D 110 ? THR D 497 . ? 1_555 ? 77 AC6 11 ASP D 113 ? ASP D 500 . ? 1_555 ? 78 AC7 12 ILE D 47 ? ILE D 434 . ? 1_555 ? 79 AC7 12 THR D 49 ? THR D 436 . ? 1_555 ? 80 AC7 12 TRP D 51 ? TRP D 438 . ? 1_555 ? 81 AC7 12 ASP D 52 ? ASP D 439 . ? 1_555 ? 82 AC7 12 THR D 69 ? THR D 456 . ? 1_555 ? 83 AC7 12 ASN D 71 ? ASN D 458 . ? 1_555 ? 84 AC7 12 ILE D 73 ? ILE D 460 . ? 1_555 ? 85 AC7 12 TYR D 91 ? TYR D 478 . ? 1_555 ? 86 AC7 12 ASN D 92 ? ASN D 479 . ? 1_555 ? 87 AC7 12 ILE D 93 ? ILE D 480 . ? 1_555 ? 88 AC7 12 GLY D 95 ? GLY D 482 . ? 1_555 ? 89 AC7 12 PRO D 97 ? PRO D 484 . ? 1_555 ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ILE A 393 ? ? -132.08 -34.57 2 1 ASN A 404 ? ? -75.67 47.70 3 1 ASN A 418 ? ? 71.85 41.31 4 1 THR A 456 ? ? -61.81 99.09 5 1 SER A 502 ? ? -84.54 42.94 6 1 SER A 502 ? ? -90.21 49.82 7 1 ASP B 426 ? ? -104.07 -168.00 8 1 ASN B 447 ? ? 40.11 71.68 9 1 ARG B 490 ? ? 82.19 24.80 10 1 ASN C 447 ? ? 34.26 69.21 11 1 PHE C 505 ? ? -66.22 86.12 12 1 ASP D 392 ? ? -70.39 -72.51 13 1 PRO D 397 ? ? 25.48 112.30 14 1 SER D 403 ? ? -58.33 -8.79 15 1 ARG D 490 ? ? 70.08 32.34 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 SER _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 395 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 LYS _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 396 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -130.94 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 507 ? A GLY 120 2 1 Y 1 A LYS 508 ? A LYS 121 3 1 Y 1 A LYS 509 ? A LYS 122 4 1 Y 1 B LYS 509 ? B LYS 122 5 1 Y 1 C GLY 507 ? C GLY 120 6 1 Y 1 C LYS 508 ? C LYS 121 7 1 Y 1 C LYS 509 ? C LYS 122 8 1 Y 1 D GLY 507 ? D GLY 120 9 1 Y 1 D LYS 508 ? D LYS 121 10 1 Y 1 D LYS 509 ? D LYS 122 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 ILE N N N N 144 ILE CA C N S 145 ILE C C N N 146 ILE O O N N 147 ILE CB C N S 148 ILE CG1 C N N 149 ILE CG2 C N N 150 ILE CD1 C N N 151 ILE OXT O N N 152 ILE H H N N 153 ILE H2 H N N 154 ILE HA H N N 155 ILE HB H N N 156 ILE HG12 H N N 157 ILE HG13 H N N 158 ILE HG21 H N N 159 ILE HG22 H N N 160 ILE HG23 H N N 161 ILE HD11 H N N 162 ILE HD12 H N N 163 ILE HD13 H N N 164 ILE HXT H N N 165 LEU N N N N 166 LEU CA C N S 167 LEU C C N N 168 LEU O O N N 169 LEU CB C N N 170 LEU CG C N N 171 LEU CD1 C N N 172 LEU CD2 C N N 173 LEU OXT O N N 174 LEU H H N N 175 LEU H2 H N N 176 LEU HA H N N 177 LEU HB2 H N N 178 LEU HB3 H N N 179 LEU HG H N N 180 LEU HD11 H N N 181 LEU HD12 H N N 182 LEU HD13 H N N 183 LEU HD21 H N N 184 LEU HD22 H N N 185 LEU HD23 H N N 186 LEU HXT H N N 187 LYS N N N N 188 LYS CA C N S 189 LYS C C N N 190 LYS O O N N 191 LYS CB C N N 192 LYS CG C N N 193 LYS CD C N N 194 LYS CE C N N 195 LYS NZ N N N 196 LYS OXT O N N 197 LYS H H N N 198 LYS H2 H N N 199 LYS HA H N N 200 LYS HB2 H N N 201 LYS HB3 H N N 202 LYS HG2 H N N 203 LYS HG3 H N N 204 LYS HD2 H N N 205 LYS HD3 H N N 206 LYS HE2 H N N 207 LYS HE3 H N N 208 LYS HZ1 H N N 209 LYS HZ2 H N N 210 LYS HZ3 H N N 211 LYS HXT H N N 212 MET N N N N 213 MET CA C N S 214 MET C C N N 215 MET O O N N 216 MET CB C N N 217 MET CG C N N 218 MET SD S N N 219 MET CE C N N 220 MET OXT O N N 221 MET H H N N 222 MET H2 H N N 223 MET HA H N N 224 MET HB2 H N N 225 MET HB3 H N N 226 MET HG2 H N N 227 MET HG3 H N N 228 MET HE1 H N N 229 MET HE2 H N N 230 MET HE3 H N N 231 MET HXT H N N 232 MTA CS C N N 233 MTA "S5'" S N N 234 MTA "C5'" C N N 235 MTA "C4'" C N S 236 MTA "O4'" O N N 237 MTA "C2'" C N R 238 MTA "O2'" O N N 239 MTA "C3'" C N S 240 MTA "O3'" O N N 241 MTA "C1'" C N R 242 MTA N9 N Y N 243 MTA C8 C Y N 244 MTA N7 N Y N 245 MTA C5 C Y N 246 MTA C6 C Y N 247 MTA N6 N N N 248 MTA N1 N Y N 249 MTA C2 C Y N 250 MTA N3 N Y N 251 MTA C4 C Y N 252 MTA HCS1 H N N 253 MTA HCS2 H N N 254 MTA HCS3 H N N 255 MTA "H5'1" H N N 256 MTA "H5'2" H N N 257 MTA "H4'" H N N 258 MTA "H2'" H N N 259 MTA "HO2'" H N N 260 MTA "H3'" H N N 261 MTA H3T H N N 262 MTA "H1'" H N N 263 MTA H8 H N N 264 MTA H61 H N N 265 MTA H62 H N N 266 MTA H2 H N N 267 PHE N N N N 268 PHE CA C N S 269 PHE C C N N 270 PHE O O N N 271 PHE CB C N N 272 PHE CG C Y N 273 PHE CD1 C Y N 274 PHE CD2 C Y N 275 PHE CE1 C Y N 276 PHE CE2 C Y N 277 PHE CZ C Y N 278 PHE OXT O N N 279 PHE H H N N 280 PHE H2 H N N 281 PHE HA H N N 282 PHE HB2 H N N 283 PHE HB3 H N N 284 PHE HD1 H N N 285 PHE HD2 H N N 286 PHE HE1 H N N 287 PHE HE2 H N N 288 PHE HZ H N N 289 PHE HXT H N N 290 PRO N N N N 291 PRO CA C N S 292 PRO C C N N 293 PRO O O N N 294 PRO CB C N N 295 PRO CG C N N 296 PRO CD C N N 297 PRO OXT O N N 298 PRO H H N N 299 PRO HA H N N 300 PRO HB2 H N N 301 PRO HB3 H N N 302 PRO HG2 H N N 303 PRO HG3 H N N 304 PRO HD2 H N N 305 PRO HD3 H N N 306 PRO HXT H N N 307 SAM N N N N 308 SAM CA C N S 309 SAM C C N N 310 SAM O O N N 311 SAM OXT O N N 312 SAM CB C N N 313 SAM CG C N N 314 SAM SD S N S 315 SAM CE C N N 316 SAM "C5'" C N N 317 SAM "C4'" C N S 318 SAM "O4'" O N N 319 SAM "C3'" C N S 320 SAM "O3'" O N N 321 SAM "C2'" C N R 322 SAM "O2'" O N N 323 SAM "C1'" C N R 324 SAM N9 N Y N 325 SAM C8 C Y N 326 SAM N7 N Y N 327 SAM C5 C Y N 328 SAM C6 C Y N 329 SAM N6 N N N 330 SAM N1 N Y N 331 SAM C2 C Y N 332 SAM N3 N Y N 333 SAM C4 C Y N 334 SAM HN1 H N N 335 SAM HN2 H N N 336 SAM HA H N N 337 SAM HB1 H N N 338 SAM HB2 H N N 339 SAM HG1 H N N 340 SAM HG2 H N N 341 SAM HE1 H N N 342 SAM HE2 H N N 343 SAM HE3 H N N 344 SAM "H5'1" H N N 345 SAM "H5'2" H N N 346 SAM "H4'" H N N 347 SAM "H3'" H N N 348 SAM "HO3'" H N N 349 SAM "H2'" H N N 350 SAM "HO2'" H N N 351 SAM "H1'" H N N 352 SAM H8 H N N 353 SAM HN61 H N N 354 SAM HN62 H N N 355 SAM H2 H N N 356 SER N N N N 357 SER CA C N S 358 SER C C N N 359 SER O O N N 360 SER CB C N N 361 SER OG O N N 362 SER OXT O N N 363 SER H H N N 364 SER H2 H N N 365 SER HA H N N 366 SER HB2 H N N 367 SER HB3 H N N 368 SER HG H N N 369 SER HXT H N N 370 THR N N N N 371 THR CA C N S 372 THR C C N N 373 THR O O N N 374 THR CB C N R 375 THR OG1 O N N 376 THR CG2 C N N 377 THR OXT O N N 378 THR H H N N 379 THR H2 H N N 380 THR HA H N N 381 THR HB H N N 382 THR HG1 H N N 383 THR HG21 H N N 384 THR HG22 H N N 385 THR HG23 H N N 386 THR HXT H N N 387 TRP N N N N 388 TRP CA C N S 389 TRP C C N N 390 TRP O O N N 391 TRP CB C N N 392 TRP CG C Y N 393 TRP CD1 C Y N 394 TRP CD2 C Y N 395 TRP NE1 N Y N 396 TRP CE2 C Y N 397 TRP CE3 C Y N 398 TRP CZ2 C Y N 399 TRP CZ3 C Y N 400 TRP CH2 C Y N 401 TRP OXT O N N 402 TRP H H N N 403 TRP H2 H N N 404 TRP HA H N N 405 TRP HB2 H N N 406 TRP HB3 H N N 407 TRP HD1 H N N 408 TRP HE1 H N N 409 TRP HE3 H N N 410 TRP HZ2 H N N 411 TRP HZ3 H N N 412 TRP HH2 H N N 413 TRP HXT H N N 414 TYR N N N N 415 TYR CA C N S 416 TYR C C N N 417 TYR O O N N 418 TYR CB C N N 419 TYR CG C Y N 420 TYR CD1 C Y N 421 TYR CD2 C Y N 422 TYR CE1 C Y N 423 TYR CE2 C Y N 424 TYR CZ C Y N 425 TYR OH O N N 426 TYR OXT O N N 427 TYR H H N N 428 TYR H2 H N N 429 TYR HA H N N 430 TYR HB2 H N N 431 TYR HB3 H N N 432 TYR HD1 H N N 433 TYR HD2 H N N 434 TYR HE1 H N N 435 TYR HE2 H N N 436 TYR HH H N N 437 TYR HXT H N N 438 VAL N N N N 439 VAL CA C N S 440 VAL C C N N 441 VAL O O N N 442 VAL CB C N N 443 VAL CG1 C N N 444 VAL CG2 C N N 445 VAL OXT O N N 446 VAL H H N N 447 VAL H2 H N N 448 VAL HA H N N 449 VAL HB H N N 450 VAL HG11 H N N 451 VAL HG12 H N N 452 VAL HG13 H N N 453 VAL HG21 H N N 454 VAL HG22 H N N 455 VAL HG23 H N N 456 VAL HXT H N N 457 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 ILE N CA sing N N 137 ILE N H sing N N 138 ILE N H2 sing N N 139 ILE CA C sing N N 140 ILE CA CB sing N N 141 ILE CA HA sing N N 142 ILE C O doub N N 143 ILE C OXT sing N N 144 ILE CB CG1 sing N N 145 ILE CB CG2 sing N N 146 ILE CB HB sing N N 147 ILE CG1 CD1 sing N N 148 ILE CG1 HG12 sing N N 149 ILE CG1 HG13 sing N N 150 ILE CG2 HG21 sing N N 151 ILE CG2 HG22 sing N N 152 ILE CG2 HG23 sing N N 153 ILE CD1 HD11 sing N N 154 ILE CD1 HD12 sing N N 155 ILE CD1 HD13 sing N N 156 ILE OXT HXT sing N N 157 LEU N CA sing N N 158 LEU N H sing N N 159 LEU N H2 sing N N 160 LEU CA C sing N N 161 LEU CA CB sing N N 162 LEU CA HA sing N N 163 LEU C O doub N N 164 LEU C OXT sing N N 165 LEU CB CG sing N N 166 LEU CB HB2 sing N N 167 LEU CB HB3 sing N N 168 LEU CG CD1 sing N N 169 LEU CG CD2 sing N N 170 LEU CG HG sing N N 171 LEU CD1 HD11 sing N N 172 LEU CD1 HD12 sing N N 173 LEU CD1 HD13 sing N N 174 LEU CD2 HD21 sing N N 175 LEU CD2 HD22 sing N N 176 LEU CD2 HD23 sing N N 177 LEU OXT HXT sing N N 178 LYS N CA sing N N 179 LYS N H sing N N 180 LYS N H2 sing N N 181 LYS CA C sing N N 182 LYS CA CB sing N N 183 LYS CA HA sing N N 184 LYS C O doub N N 185 LYS C OXT sing N N 186 LYS CB CG sing N N 187 LYS CB HB2 sing N N 188 LYS CB HB3 sing N N 189 LYS CG CD sing N N 190 LYS CG HG2 sing N N 191 LYS CG HG3 sing N N 192 LYS CD CE sing N N 193 LYS CD HD2 sing N N 194 LYS CD HD3 sing N N 195 LYS CE NZ sing N N 196 LYS CE HE2 sing N N 197 LYS CE HE3 sing N N 198 LYS NZ HZ1 sing N N 199 LYS NZ HZ2 sing N N 200 LYS NZ HZ3 sing N N 201 LYS OXT HXT sing N N 202 MET N CA sing N N 203 MET N H sing N N 204 MET N H2 sing N N 205 MET CA C sing N N 206 MET CA CB sing N N 207 MET CA HA sing N N 208 MET C O doub N N 209 MET C OXT sing N N 210 MET CB CG sing N N 211 MET CB HB2 sing N N 212 MET CB HB3 sing N N 213 MET CG SD sing N N 214 MET CG HG2 sing N N 215 MET CG HG3 sing N N 216 MET SD CE sing N N 217 MET CE HE1 sing N N 218 MET CE HE2 sing N N 219 MET CE HE3 sing N N 220 MET OXT HXT sing N N 221 MTA CS "S5'" sing N N 222 MTA CS HCS1 sing N N 223 MTA CS HCS2 sing N N 224 MTA CS HCS3 sing N N 225 MTA "S5'" "C5'" sing N N 226 MTA "C5'" "C4'" sing N N 227 MTA "C5'" "H5'1" sing N N 228 MTA "C5'" "H5'2" sing N N 229 MTA "C4'" "O4'" sing N N 230 MTA "C4'" "C3'" sing N N 231 MTA "C4'" "H4'" sing N N 232 MTA "O4'" "C1'" sing N N 233 MTA "C2'" "O2'" sing N N 234 MTA "C2'" "C3'" sing N N 235 MTA "C2'" "C1'" sing N N 236 MTA "C2'" "H2'" sing N N 237 MTA "O2'" "HO2'" sing N N 238 MTA "C3'" "O3'" sing N N 239 MTA "C3'" "H3'" sing N N 240 MTA "O3'" H3T sing N N 241 MTA "C1'" N9 sing N N 242 MTA "C1'" "H1'" sing N N 243 MTA N9 C8 sing Y N 244 MTA N9 C4 sing Y N 245 MTA C8 N7 doub Y N 246 MTA C8 H8 sing N N 247 MTA N7 C5 sing Y N 248 MTA C5 C6 sing Y N 249 MTA C5 C4 doub Y N 250 MTA C6 N6 sing N N 251 MTA C6 N1 doub Y N 252 MTA N6 H61 sing N N 253 MTA N6 H62 sing N N 254 MTA N1 C2 sing Y N 255 MTA C2 N3 doub Y N 256 MTA C2 H2 sing N N 257 MTA N3 C4 sing Y N 258 PHE N CA sing N N 259 PHE N H sing N N 260 PHE N H2 sing N N 261 PHE CA C sing N N 262 PHE CA CB sing N N 263 PHE CA HA sing N N 264 PHE C O doub N N 265 PHE C OXT sing N N 266 PHE CB CG sing N N 267 PHE CB HB2 sing N N 268 PHE CB HB3 sing N N 269 PHE CG CD1 doub Y N 270 PHE CG CD2 sing Y N 271 PHE CD1 CE1 sing Y N 272 PHE CD1 HD1 sing N N 273 PHE CD2 CE2 doub Y N 274 PHE CD2 HD2 sing N N 275 PHE CE1 CZ doub Y N 276 PHE CE1 HE1 sing N N 277 PHE CE2 CZ sing Y N 278 PHE CE2 HE2 sing N N 279 PHE CZ HZ sing N N 280 PHE OXT HXT sing N N 281 PRO N CA sing N N 282 PRO N CD sing N N 283 PRO N H sing N N 284 PRO CA C sing N N 285 PRO CA CB sing N N 286 PRO CA HA sing N N 287 PRO C O doub N N 288 PRO C OXT sing N N 289 PRO CB CG sing N N 290 PRO CB HB2 sing N N 291 PRO CB HB3 sing N N 292 PRO CG CD sing N N 293 PRO CG HG2 sing N N 294 PRO CG HG3 sing N N 295 PRO CD HD2 sing N N 296 PRO CD HD3 sing N N 297 PRO OXT HXT sing N N 298 SAM N CA sing N N 299 SAM N HN1 sing N N 300 SAM N HN2 sing N N 301 SAM CA C sing N N 302 SAM CA CB sing N N 303 SAM CA HA sing N N 304 SAM C O doub N N 305 SAM C OXT sing N N 306 SAM CB CG sing N N 307 SAM CB HB1 sing N N 308 SAM CB HB2 sing N N 309 SAM CG SD sing N N 310 SAM CG HG1 sing N N 311 SAM CG HG2 sing N N 312 SAM SD CE sing N N 313 SAM SD "C5'" sing N N 314 SAM CE HE1 sing N N 315 SAM CE HE2 sing N N 316 SAM CE HE3 sing N N 317 SAM "C5'" "C4'" sing N N 318 SAM "C5'" "H5'1" sing N N 319 SAM "C5'" "H5'2" sing N N 320 SAM "C4'" "O4'" sing N N 321 SAM "C4'" "C3'" sing N N 322 SAM "C4'" "H4'" sing N N 323 SAM "O4'" "C1'" sing N N 324 SAM "C3'" "O3'" sing N N 325 SAM "C3'" "C2'" sing N N 326 SAM "C3'" "H3'" sing N N 327 SAM "O3'" "HO3'" sing N N 328 SAM "C2'" "O2'" sing N N 329 SAM "C2'" "C1'" sing N N 330 SAM "C2'" "H2'" sing N N 331 SAM "O2'" "HO2'" sing N N 332 SAM "C1'" N9 sing N N 333 SAM "C1'" "H1'" sing N N 334 SAM N9 C8 sing Y N 335 SAM N9 C4 sing Y N 336 SAM C8 N7 doub Y N 337 SAM C8 H8 sing N N 338 SAM N7 C5 sing Y N 339 SAM C5 C6 sing Y N 340 SAM C5 C4 doub Y N 341 SAM C6 N6 sing N N 342 SAM C6 N1 doub Y N 343 SAM N6 HN61 sing N N 344 SAM N6 HN62 sing N N 345 SAM N1 C2 sing Y N 346 SAM C2 N3 doub Y N 347 SAM C2 H2 sing N N 348 SAM N3 C4 sing Y N 349 SER N CA sing N N 350 SER N H sing N N 351 SER N H2 sing N N 352 SER CA C sing N N 353 SER CA CB sing N N 354 SER CA HA sing N N 355 SER C O doub N N 356 SER C OXT sing N N 357 SER CB OG sing N N 358 SER CB HB2 sing N N 359 SER CB HB3 sing N N 360 SER OG HG sing N N 361 SER OXT HXT sing N N 362 THR N CA sing N N 363 THR N H sing N N 364 THR N H2 sing N N 365 THR CA C sing N N 366 THR CA CB sing N N 367 THR CA HA sing N N 368 THR C O doub N N 369 THR C OXT sing N N 370 THR CB OG1 sing N N 371 THR CB CG2 sing N N 372 THR CB HB sing N N 373 THR OG1 HG1 sing N N 374 THR CG2 HG21 sing N N 375 THR CG2 HG22 sing N N 376 THR CG2 HG23 sing N N 377 THR OXT HXT sing N N 378 TRP N CA sing N N 379 TRP N H sing N N 380 TRP N H2 sing N N 381 TRP CA C sing N N 382 TRP CA CB sing N N 383 TRP CA HA sing N N 384 TRP C O doub N N 385 TRP C OXT sing N N 386 TRP CB CG sing N N 387 TRP CB HB2 sing N N 388 TRP CB HB3 sing N N 389 TRP CG CD1 doub Y N 390 TRP CG CD2 sing Y N 391 TRP CD1 NE1 sing Y N 392 TRP CD1 HD1 sing N N 393 TRP CD2 CE2 doub Y N 394 TRP CD2 CE3 sing Y N 395 TRP NE1 CE2 sing Y N 396 TRP NE1 HE1 sing N N 397 TRP CE2 CZ2 sing Y N 398 TRP CE3 CZ3 doub Y N 399 TRP CE3 HE3 sing N N 400 TRP CZ2 CH2 doub Y N 401 TRP CZ2 HZ2 sing N N 402 TRP CZ3 CH2 sing Y N 403 TRP CZ3 HZ3 sing N N 404 TRP CH2 HH2 sing N N 405 TRP OXT HXT sing N N 406 TYR N CA sing N N 407 TYR N H sing N N 408 TYR N H2 sing N N 409 TYR CA C sing N N 410 TYR CA CB sing N N 411 TYR CA HA sing N N 412 TYR C O doub N N 413 TYR C OXT sing N N 414 TYR CB CG sing N N 415 TYR CB HB2 sing N N 416 TYR CB HB3 sing N N 417 TYR CG CD1 doub Y N 418 TYR CG CD2 sing Y N 419 TYR CD1 CE1 sing Y N 420 TYR CD1 HD1 sing N N 421 TYR CD2 CE2 doub Y N 422 TYR CD2 HD2 sing N N 423 TYR CE1 CZ doub Y N 424 TYR CE1 HE1 sing N N 425 TYR CE2 CZ sing Y N 426 TYR CE2 HE2 sing N N 427 TYR CZ OH sing N N 428 TYR OH HH sing N N 429 TYR OXT HXT sing N N 430 VAL N CA sing N N 431 VAL N H sing N N 432 VAL N H2 sing N N 433 VAL CA C sing N N 434 VAL CA CB sing N N 435 VAL CA HA sing N N 436 VAL C O doub N N 437 VAL C OXT sing N N 438 VAL CB CG1 sing N N 439 VAL CB CG2 sing N N 440 VAL CB HB sing N N 441 VAL CG1 HG11 sing N N 442 VAL CG1 HG12 sing N N 443 VAL CG1 HG13 sing N N 444 VAL CG2 HG21 sing N N 445 VAL CG2 HG22 sing N N 446 VAL CG2 HG23 sing N N 447 VAL OXT HXT sing N N 448 # _atom_sites.entry_id 3KPD _atom_sites.fract_transf_matrix[1][1] 0.017044 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.006032 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008130 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_