HEADER OXIDOREDUCTASE 16-NOV-09 3KPF TITLE X-RAY STRUCTURE OF THE MUTANT LYS300MET OF POLYAMINE OXIDASE FROM ZEA TITLE 2 MAYS COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYAMINE OXIDASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.5.3.-; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZEA MAYS; SOURCE 3 ORGANISM_COMMON: MAIZE; SOURCE 4 ORGANISM_TAXID: 4577; SOURCE 5 GENE: PAO; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: X-33; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS FLAVOENZYME, POLYAMINE OXIDASE, DISULFIDE BOND, FAD, FLAVOPROTEIN, KEYWDS 2 GLYCOPROTEIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.FIORILLO,A.ILARI,P.TAVLADORAKI REVDAT 5 30-OCT-24 3KPF 1 REMARK REVDAT 4 06-SEP-23 3KPF 1 REMARK REVDAT 3 13-OCT-21 3KPF 1 REMARK SEQADV HETSYN REVDAT 2 29-JUL-20 3KPF 1 COMPND REMARK SEQADV HETNAM REVDAT 2 2 1 LINK SITE ATOM REVDAT 1 17-NOV-10 3KPF 0 JRNL AUTH A.FIORILLO,A.ILARI,P.TAVLADORAKI JRNL TITL THE CRYSTAL STRUCTURE OF THE MUTANT K300M OF POLYAMINE JRNL TITL 2 OXIDASE FROM ZEA MAYS UNVEILS THE ROLE OF LYS300 IN JRNL TITL 3 CATALYSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0043 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : -3.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 43422 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2312 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3199 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 156 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7473 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 162 REMARK 3 SOLVENT ATOMS : 171 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.29000 REMARK 3 B22 (A**2) : 1.29000 REMARK 3 B33 (A**2) : -1.93000 REMARK 3 B12 (A**2) : 0.64000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.445 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.282 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.170 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.163 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.920 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.883 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7851 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10689 ; 1.220 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 948 ; 6.651 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 381 ;36.933 ;23.990 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1269 ;15.897 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 50 ;14.715 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1133 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6009 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2280 ; 0.410 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3691 ; 0.785 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1486 ; 1.100 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1430 ; 1.933 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 3495 ; 0.24 ; 5.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 3495 ; 2.91 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3KPF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1000056281. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45830 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.13300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.45400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1B37 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50% SATURATED AMMONIUM SULFATE REMARK 280 SOLUTION, 0.1M SODIUM ACETATE PH 4.6, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.15700 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 126.31400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 126.31400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 63.15700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 GLY A 469 REMARK 465 LYS A 470 REMARK 465 TYR A 471 REMARK 465 ASP A 472 REMARK 465 HIS A 473 REMARK 465 HIS A 474 REMARK 465 HIS A 475 REMARK 465 HIS A 476 REMARK 465 HIS A 477 REMARK 465 HIS A 478 REMARK 465 ALA B 1 REMARK 465 THR B 2 REMARK 465 VAL B 3 REMARK 465 GLN B 468 REMARK 465 GLY B 469 REMARK 465 LYS B 470 REMARK 465 TYR B 471 REMARK 465 ASP B 472 REMARK 465 HIS B 473 REMARK 465 HIS B 474 REMARK 465 HIS B 475 REMARK 465 HIS B 476 REMARK 465 HIS B 477 REMARK 465 HIS B 478 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 135 NE CZ NH1 NH2 REMARK 480 LYS A 218 CD CE NZ REMARK 480 LYS A 222 CB CG CD CE NZ REMARK 480 LYS A 279 CD CE NZ REMARK 480 ARG A 419 NE CZ NH1 NH2 REMARK 480 LYS A 464 CD CE NZ REMARK 480 LYS B 81 CE NZ REMARK 480 LYS B 111 NZ REMARK 480 ASP B 221 OD1 OD2 REMARK 480 LYS B 222 CD CE NZ REMARK 480 LYS B 250 CG CD CE NZ REMARK 480 LYS B 279 CD CE NZ REMARK 480 LYS B 464 CG CD CE NZ REMARK 480 HIS B 466 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 353 O HOH A 546 2.16 REMARK 500 OD1 ASP A 351 NH2 ARG B 176 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 65 30.30 73.00 REMARK 500 TYR A 216 -13.10 -140.41 REMARK 500 ASN A 254 -2.17 83.68 REMARK 500 ASP A 351 -118.20 50.44 REMARK 500 ARG A 392 59.94 -113.93 REMARK 500 ALA B 50 55.57 33.99 REMARK 500 ASN B 65 0.70 86.91 REMARK 500 SER B 78 -64.84 -108.76 REMARK 500 THR B 79 -71.09 -57.02 REMARK 500 TYR B 216 -5.60 -140.61 REMARK 500 ASN B 254 16.16 52.51 REMARK 500 PHE B 309 -4.07 -143.56 REMARK 500 TYR B 329 58.72 39.48 REMARK 500 ASN B 343 43.42 71.29 REMARK 500 ASP B 351 -121.24 61.48 REMARK 500 ARG B 392 71.46 -107.38 REMARK 500 TYR B 399 -48.19 -136.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1B37 RELATED DB: PDB REMARK 900 ZMPAO WT REMARK 900 RELATED ID: 3KU9 RELATED DB: PDB REMARK 900 ZMPAO K300M IN COMPLEX WITH SPERMINE REMARK 900 RELATED ID: 3L1R RELATED DB: PDB REMARK 900 ZMPAO K300M IN COMPLEX WITH SPERMIDINE DBREF 3KPF A 1 472 UNP O64411 PAO_MAIZE 29 500 DBREF 3KPF B 1 472 UNP O64411 PAO_MAIZE 29 500 SEQADV 3KPF MET A 300 UNP O64411 LYS 328 ENGINEERED MUTATION SEQADV 3KPF HIS A 473 UNP O64411 EXPRESSION TAG SEQADV 3KPF HIS A 474 UNP O64411 EXPRESSION TAG SEQADV 3KPF HIS A 475 UNP O64411 EXPRESSION TAG SEQADV 3KPF HIS A 476 UNP O64411 EXPRESSION TAG SEQADV 3KPF HIS A 477 UNP O64411 EXPRESSION TAG SEQADV 3KPF HIS A 478 UNP O64411 EXPRESSION TAG SEQADV 3KPF MET B 300 UNP O64411 LYS 328 ENGINEERED MUTATION SEQADV 3KPF HIS B 473 UNP O64411 EXPRESSION TAG SEQADV 3KPF HIS B 474 UNP O64411 EXPRESSION TAG SEQADV 3KPF HIS B 475 UNP O64411 EXPRESSION TAG SEQADV 3KPF HIS B 476 UNP O64411 EXPRESSION TAG SEQADV 3KPF HIS B 477 UNP O64411 EXPRESSION TAG SEQADV 3KPF HIS B 478 UNP O64411 EXPRESSION TAG SEQRES 1 A 478 ALA THR VAL GLY PRO ARG VAL ILE VAL VAL GLY ALA GLY SEQRES 2 A 478 MET SER GLY ILE SER ALA ALA LYS ARG LEU SER GLU ALA SEQRES 3 A 478 GLY ILE THR ASP LEU LEU ILE LEU GLU ALA THR ASP HIS SEQRES 4 A 478 ILE GLY GLY ARG MET HIS LYS THR ASN PHE ALA GLY ILE SEQRES 5 A 478 ASN VAL GLU LEU GLY ALA ASN TRP VAL GLU GLY VAL ASN SEQRES 6 A 478 GLY GLY LYS MET ASN PRO ILE TRP PRO ILE VAL ASN SER SEQRES 7 A 478 THR LEU LYS LEU ARG ASN PHE ARG SER ASP PHE ASP TYR SEQRES 8 A 478 LEU ALA GLN ASN VAL TYR LYS GLU ASP GLY GLY VAL TYR SEQRES 9 A 478 ASP GLU ASP TYR VAL GLN LYS ARG ILE GLU LEU ALA ASP SEQRES 10 A 478 SER VAL GLU GLU MET GLY GLU LYS LEU SER ALA THR LEU SEQRES 11 A 478 HIS ALA SER GLY ARG ASP ASP MET SER ILE LEU ALA MET SEQRES 12 A 478 GLN ARG LEU ASN GLU HIS GLN PRO ASN GLY PRO ALA THR SEQRES 13 A 478 PRO VAL ASP MET VAL VAL ASP TYR TYR LYS PHE ASP TYR SEQRES 14 A 478 GLU PHE ALA GLU PRO PRO ARG VAL THR SER LEU GLN ASN SEQRES 15 A 478 THR VAL PRO LEU ALA THR PHE SER ASP PHE GLY ASP ASP SEQRES 16 A 478 VAL TYR PHE VAL ALA ASP GLN ARG GLY TYR GLU ALA VAL SEQRES 17 A 478 VAL TYR TYR LEU ALA GLY GLN TYR LEU LYS THR ASP ASP SEQRES 18 A 478 LYS SER GLY LYS ILE VAL ASP PRO ARG LEU GLN LEU ASN SEQRES 19 A 478 LYS VAL VAL ARG GLU ILE LYS TYR SER PRO GLY GLY VAL SEQRES 20 A 478 THR VAL LYS THR GLU ASP ASN SER VAL TYR SER ALA ASP SEQRES 21 A 478 TYR VAL MET VAL SER ALA SER LEU GLY VAL LEU GLN SER SEQRES 22 A 478 ASP LEU ILE GLN PHE LYS PRO LYS LEU PRO THR TRP LYS SEQRES 23 A 478 VAL ARG ALA ILE TYR GLN PHE ASP MET ALA VAL TYR THR SEQRES 24 A 478 MET ILE PHE LEU LYS PHE PRO ARG LYS PHE TRP PRO GLU SEQRES 25 A 478 GLY LYS GLY ARG GLU PHE PHE LEU TYR ALA SER SER ARG SEQRES 26 A 478 ARG GLY TYR TYR GLY VAL TRP GLN GLU PHE GLU LYS GLN SEQRES 27 A 478 TYR PRO ASP ALA ASN VAL LEU LEU VAL THR VAL THR ASP SEQRES 28 A 478 GLU GLU SER ARG ARG ILE GLU GLN GLN SER ASP GLU GLN SEQRES 29 A 478 THR LYS ALA GLU ILE MET GLN VAL LEU ARG LYS MET PHE SEQRES 30 A 478 PRO GLY LYS ASP VAL PRO ASP ALA THR ASP ILE LEU VAL SEQRES 31 A 478 PRO ARG TRP TRP SER ASP ARG PHE TYR LYS GLY THR PHE SEQRES 32 A 478 SER ASN TRP PRO VAL GLY VAL ASN ARG TYR GLU TYR ASP SEQRES 33 A 478 GLN LEU ARG ALA PRO VAL GLY ARG VAL TYR PHE THR GLY SEQRES 34 A 478 GLU HIS THR SER GLU HIS TYR ASN GLY TYR VAL HIS GLY SEQRES 35 A 478 ALA TYR LEU SER GLY ILE ASP SER ALA GLU ILE LEU ILE SEQRES 36 A 478 ASN CYS ALA GLN LYS LYS MET CYS LYS TYR HIS VAL GLN SEQRES 37 A 478 GLY LYS TYR ASP HIS HIS HIS HIS HIS HIS SEQRES 1 B 478 ALA THR VAL GLY PRO ARG VAL ILE VAL VAL GLY ALA GLY SEQRES 2 B 478 MET SER GLY ILE SER ALA ALA LYS ARG LEU SER GLU ALA SEQRES 3 B 478 GLY ILE THR ASP LEU LEU ILE LEU GLU ALA THR ASP HIS SEQRES 4 B 478 ILE GLY GLY ARG MET HIS LYS THR ASN PHE ALA GLY ILE SEQRES 5 B 478 ASN VAL GLU LEU GLY ALA ASN TRP VAL GLU GLY VAL ASN SEQRES 6 B 478 GLY GLY LYS MET ASN PRO ILE TRP PRO ILE VAL ASN SER SEQRES 7 B 478 THR LEU LYS LEU ARG ASN PHE ARG SER ASP PHE ASP TYR SEQRES 8 B 478 LEU ALA GLN ASN VAL TYR LYS GLU ASP GLY GLY VAL TYR SEQRES 9 B 478 ASP GLU ASP TYR VAL GLN LYS ARG ILE GLU LEU ALA ASP SEQRES 10 B 478 SER VAL GLU GLU MET GLY GLU LYS LEU SER ALA THR LEU SEQRES 11 B 478 HIS ALA SER GLY ARG ASP ASP MET SER ILE LEU ALA MET SEQRES 12 B 478 GLN ARG LEU ASN GLU HIS GLN PRO ASN GLY PRO ALA THR SEQRES 13 B 478 PRO VAL ASP MET VAL VAL ASP TYR TYR LYS PHE ASP TYR SEQRES 14 B 478 GLU PHE ALA GLU PRO PRO ARG VAL THR SER LEU GLN ASN SEQRES 15 B 478 THR VAL PRO LEU ALA THR PHE SER ASP PHE GLY ASP ASP SEQRES 16 B 478 VAL TYR PHE VAL ALA ASP GLN ARG GLY TYR GLU ALA VAL SEQRES 17 B 478 VAL TYR TYR LEU ALA GLY GLN TYR LEU LYS THR ASP ASP SEQRES 18 B 478 LYS SER GLY LYS ILE VAL ASP PRO ARG LEU GLN LEU ASN SEQRES 19 B 478 LYS VAL VAL ARG GLU ILE LYS TYR SER PRO GLY GLY VAL SEQRES 20 B 478 THR VAL LYS THR GLU ASP ASN SER VAL TYR SER ALA ASP SEQRES 21 B 478 TYR VAL MET VAL SER ALA SER LEU GLY VAL LEU GLN SER SEQRES 22 B 478 ASP LEU ILE GLN PHE LYS PRO LYS LEU PRO THR TRP LYS SEQRES 23 B 478 VAL ARG ALA ILE TYR GLN PHE ASP MET ALA VAL TYR THR SEQRES 24 B 478 MET ILE PHE LEU LYS PHE PRO ARG LYS PHE TRP PRO GLU SEQRES 25 B 478 GLY LYS GLY ARG GLU PHE PHE LEU TYR ALA SER SER ARG SEQRES 26 B 478 ARG GLY TYR TYR GLY VAL TRP GLN GLU PHE GLU LYS GLN SEQRES 27 B 478 TYR PRO ASP ALA ASN VAL LEU LEU VAL THR VAL THR ASP SEQRES 28 B 478 GLU GLU SER ARG ARG ILE GLU GLN GLN SER ASP GLU GLN SEQRES 29 B 478 THR LYS ALA GLU ILE MET GLN VAL LEU ARG LYS MET PHE SEQRES 30 B 478 PRO GLY LYS ASP VAL PRO ASP ALA THR ASP ILE LEU VAL SEQRES 31 B 478 PRO ARG TRP TRP SER ASP ARG PHE TYR LYS GLY THR PHE SEQRES 32 B 478 SER ASN TRP PRO VAL GLY VAL ASN ARG TYR GLU TYR ASP SEQRES 33 B 478 GLN LEU ARG ALA PRO VAL GLY ARG VAL TYR PHE THR GLY SEQRES 34 B 478 GLU HIS THR SER GLU HIS TYR ASN GLY TYR VAL HIS GLY SEQRES 35 B 478 ALA TYR LEU SER GLY ILE ASP SER ALA GLU ILE LEU ILE SEQRES 36 B 478 ASN CYS ALA GLN LYS LYS MET CYS LYS TYR HIS VAL GLN SEQRES 37 B 478 GLY LYS TYR ASP HIS HIS HIS HIS HIS HIS MODRES 3KPF ASN A 77 ASN GLYCOSYLATION SITE MODRES 3KPF ASN B 77 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET FAD A 500 53 HET NAG A 600 14 HET CL A 479 1 HET ACT A 480 4 HET FAD B 500 53 HET SO4 B 479 5 HET ACT B 480 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM CL CHLORIDE ION HETNAM ACT ACETATE ION HETNAM SO4 SULFATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 3(C8 H15 N O6) FORMUL 4 FAD 2(C27 H33 N9 O15 P2) FORMUL 6 CL CL 1- FORMUL 7 ACT 2(C2 H3 O2 1-) FORMUL 9 SO4 O4 S 2- FORMUL 11 HOH *171(H2 O) HELIX 1 1 GLY A 13 GLY A 27 1 15 HELIX 2 2 PRO A 71 SER A 78 1 8 HELIX 3 3 TYR A 91 GLN A 94 5 4 HELIX 4 4 ASP A 105 THR A 129 1 25 HELIX 5 5 SER A 139 HIS A 149 1 11 HELIX 6 6 THR A 156 PHE A 167 1 12 HELIX 7 7 PHE A 167 ALA A 172 1 6 HELIX 8 8 SER A 179 VAL A 184 1 6 HELIX 9 9 LEU A 186 GLY A 193 1 8 HELIX 10 10 GLU A 206 GLY A 214 1 9 HELIX 11 11 SER A 267 SER A 273 1 7 HELIX 12 12 PRO A 283 PHE A 293 1 11 HELIX 13 13 ASP A 351 GLN A 360 1 10 HELIX 14 14 SER A 361 PHE A 377 1 17 HELIX 15 15 ASN A 411 ALA A 420 1 10 HELIX 16 16 GLY A 429 SER A 433 5 5 HELIX 17 17 TYR A 439 GLN A 459 1 21 HELIX 18 18 GLY B 13 ALA B 26 1 14 HELIX 19 19 PRO B 71 SER B 78 1 8 HELIX 20 20 TYR B 91 GLN B 94 5 4 HELIX 21 21 ASP B 105 THR B 129 1 25 HELIX 22 22 SER B 139 HIS B 149 1 11 HELIX 23 23 THR B 156 PHE B 167 1 12 HELIX 24 24 PHE B 167 ALA B 172 1 6 HELIX 25 25 LEU B 186 GLY B 193 1 8 HELIX 26 26 GLU B 206 GLN B 215 1 10 HELIX 27 27 SER B 267 SER B 273 1 7 HELIX 28 28 PRO B 283 PHE B 293 1 11 HELIX 29 29 ASP B 351 GLN B 359 1 9 HELIX 30 30 SER B 361 PHE B 377 1 17 HELIX 31 31 ASN B 411 ALA B 420 1 10 HELIX 32 32 GLY B 429 SER B 433 5 5 HELIX 33 33 TYR B 439 GLN B 459 1 21 SHEET 1 A 5 LEU A 231 GLN A 232 0 SHEET 2 A 5 ASP A 30 LEU A 34 1 N ILE A 33 O GLN A 232 SHEET 3 A 5 ARG A 6 VAL A 10 1 N VAL A 9 O LEU A 32 SHEET 4 A 5 TYR A 261 VAL A 264 1 O MET A 263 N ILE A 8 SHEET 5 A 5 VAL A 425 PHE A 427 1 O TYR A 426 N VAL A 262 SHEET 1 B 2 LYS A 46 PHE A 49 0 SHEET 2 B 2 ILE A 52 GLU A 55 -1 O ILE A 52 N PHE A 49 SHEET 1 C 3 TRP A 60 VAL A 64 0 SHEET 2 C 3 ASP A 195 VAL A 199 -1 O TYR A 197 N VAL A 61 SHEET 3 C 3 ASN A 84 ARG A 86 -1 N PHE A 85 O PHE A 198 SHEET 1 D 6 VAL A 96 LYS A 98 0 SHEET 2 D 6 PHE A 318 ALA A 322 1 O LEU A 320 N TYR A 97 SHEET 3 D 6 VAL A 331 GLU A 334 -1 O TRP A 332 N PHE A 319 SHEET 4 D 6 VAL A 344 THR A 350 -1 O LEU A 346 N GLN A 333 SHEET 5 D 6 TYR A 298 LYS A 304 -1 N THR A 299 O VAL A 349 SHEET 6 D 6 ASP A 387 LEU A 389 -1 O LEU A 389 N PHE A 302 SHEET 1 E 4 VAL A 256 ALA A 259 0 SHEET 2 E 4 VAL A 247 THR A 251 -1 N VAL A 249 O TYR A 257 SHEET 3 E 4 VAL A 237 TYR A 242 -1 N LYS A 241 O THR A 248 SHEET 4 E 4 GLN A 277 LYS A 279 1 O GLN A 277 N ARG A 238 SHEET 1 F 2 ASP A 294 ALA A 296 0 SHEET 2 F 2 PHE A 403 ASN A 405 -1 O ASN A 405 N ASP A 294 SHEET 1 G 5 LEU B 231 GLN B 232 0 SHEET 2 G 5 LEU B 31 LEU B 34 1 N ILE B 33 O GLN B 232 SHEET 3 G 5 VAL B 7 VAL B 10 1 N VAL B 9 O LEU B 32 SHEET 4 G 5 TYR B 261 VAL B 264 1 O MET B 263 N ILE B 8 SHEET 5 G 5 VAL B 425 PHE B 427 1 O TYR B 426 N VAL B 264 SHEET 1 H 2 LYS B 46 PHE B 49 0 SHEET 2 H 2 ILE B 52 GLU B 55 -1 O ILE B 52 N PHE B 49 SHEET 1 I 3 TRP B 60 VAL B 64 0 SHEET 2 I 3 ASP B 195 VAL B 199 -1 O TYR B 197 N VAL B 61 SHEET 3 I 3 ASN B 84 ARG B 86 -1 N PHE B 85 O PHE B 198 SHEET 1 J 6 VAL B 96 LYS B 98 0 SHEET 2 J 6 PHE B 318 ALA B 322 1 O ALA B 322 N TYR B 97 SHEET 3 J 6 VAL B 331 GLU B 334 -1 O TRP B 332 N PHE B 319 SHEET 4 J 6 VAL B 344 THR B 350 -1 O LEU B 346 N GLN B 333 SHEET 5 J 6 TYR B 298 LYS B 304 -1 N ILE B 301 O VAL B 347 SHEET 6 J 6 ASP B 387 LEU B 389 -1 O ASP B 387 N LYS B 304 SHEET 1 K 4 VAL B 256 ALA B 259 0 SHEET 2 K 4 VAL B 247 THR B 251 -1 N VAL B 249 O TYR B 257 SHEET 3 K 4 VAL B 237 TYR B 242 -1 N ARG B 238 O LYS B 250 SHEET 4 K 4 GLN B 277 LYS B 279 1 O GLN B 277 N ILE B 240 SHEET 1 L 2 ASP B 294 ALA B 296 0 SHEET 2 L 2 PHE B 403 ASN B 405 -1 O PHE B 403 N ALA B 296 SSBOND 1 CYS A 457 CYS A 463 1555 1555 2.20 LINK ND2 ASN A 77 C1 NAG A 600 1555 1555 1.45 LINK ND2 ASN B 77 C1 NAG C 1 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 CISPEP 1 VAL A 184 PRO A 185 0 -0.54 CISPEP 2 LYS A 279 PRO A 280 0 -2.46 CISPEP 3 VAL B 184 PRO B 185 0 -0.02 CISPEP 4 LYS B 279 PRO B 280 0 0.09 CRYST1 138.606 138.606 189.471 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007215 0.004165 0.000000 0.00000 SCALE2 0.000000 0.008331 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005278 0.00000