HEADER OXIDOREDUCTASE 18-NOV-09 3KRB TITLE STRUCTURE OF ALDOSE REDUCTASE FROM GIARDIA LAMBLIA AT 1.75A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALDOSE REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.21; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GIARDIA LAMBLIA; SOURCE 3 ORGANISM_TAXID: 184922; SOURCE 4 STRAIN: ATCC 50803; SOURCE 5 GENE: GL50803_7260; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS SSGCID, SBRI, EMERALD BIOSTRUCTURES, UNIVERSITY OF WASHINGTON, NIH, KEYWDS 2 NIAID, ALDOSE REDUCTASE, GIARDIA LAMBLIA, OXIDOREDUCTASE, STRUCTURAL KEYWDS 3 GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 06-SEP-23 3KRB 1 REMARK SEQADV REVDAT 3 21-SEP-11 3KRB 1 JRNL REVDAT 2 13-JUL-11 3KRB 1 VERSN REVDAT 1 01-DEC-09 3KRB 0 JRNL AUTH M.FERRELL,J.ABENDROTH,Y.ZHANG,B.SANKARAN,T.E.EDWARDS, JRNL AUTH 2 B.L.STAKER,W.C.VAN VOORHIS,L.J.STEWART,P.J.MYLER JRNL TITL STRUCTURE OF ALDOSE REDUCTASE FROM GIARDIA LAMBLIA. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 67 1113 2011 JRNL REFN ESSN 1744-3091 JRNL PMID 21904059 JRNL DOI 10.1107/S1744309111030879 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0104 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 72820 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3672 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5098 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.2000 REMARK 3 BIN FREE R VALUE SET COUNT : 272 REMARK 3 BIN FREE R VALUE : 0.2280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4852 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 106 REMARK 3 SOLVENT ATOMS : 661 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 22.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.26000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : 0.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.81000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.090 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.088 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.055 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.813 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5157 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3413 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7055 ; 1.559 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8346 ; 0.953 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 628 ; 5.568 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 229 ;39.125 ;24.410 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 828 ;11.718 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;15.111 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 777 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5661 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1019 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3101 ; 0.816 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1229 ; 0.245 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5026 ; 1.417 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2056 ; 2.282 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2020 ; 3.629 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 313 REMARK 3 RESIDUE RANGE : A 400 A 402 REMARK 3 RESIDUE RANGE : A 314 A 695 REMARK 3 ORIGIN FOR THE GROUP (A): 16.4310 38.6100 11.4320 REMARK 3 T TENSOR REMARK 3 T11: 0.0109 T22: 0.0371 REMARK 3 T33: 0.0031 T12: -0.0019 REMARK 3 T13: 0.0034 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 0.4292 L22: 0.6401 REMARK 3 L33: 0.7415 L12: -0.1495 REMARK 3 L13: 0.1209 L23: 0.0441 REMARK 3 S TENSOR REMARK 3 S11: -0.0031 S12: 0.0172 S13: 0.0128 REMARK 3 S21: 0.0223 S22: -0.0256 S23: 0.0017 REMARK 3 S31: -0.0190 S32: 0.0065 S33: 0.0287 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 313 REMARK 3 RESIDUE RANGE : B 400 B 402 REMARK 3 RESIDUE RANGE : B 314 B 668 REMARK 3 ORIGIN FOR THE GROUP (A): 32.9620 70.7640 17.3700 REMARK 3 T TENSOR REMARK 3 T11: 0.0103 T22: 0.0149 REMARK 3 T33: 0.0598 T12: 0.0024 REMARK 3 T13: -0.0162 T23: -0.0135 REMARK 3 L TENSOR REMARK 3 L11: 0.7151 L22: 1.7090 REMARK 3 L33: 0.4868 L12: 0.1597 REMARK 3 L13: -0.0644 L23: 0.2068 REMARK 3 S TENSOR REMARK 3 S11: 0.0077 S12: 0.0464 S13: -0.1062 REMARK 3 S21: 0.0613 S22: 0.0451 S23: -0.2456 REMARK 3 S31: -0.0181 S32: 0.0050 S33: -0.0528 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3KRB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1000056349. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9744 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72824 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.9700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.55800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1ZUA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MD PACT SCREEN H6: 20% PEG 3350, 200MM REMARK 280 NA FORMATE, 100MM BISTRISPROPANE, GILAA.01452.A AT 25 MG/ML, PH REMARK 280 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K, PH 6.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 98.38500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.04500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 98.38500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.04500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -66.09000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 ALA A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 THR A -10 REMARK 465 LEU A -9 REMARK 465 GLU A -8 REMARK 465 ALA A -7 REMARK 465 GLN A -6 REMARK 465 THR A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 ASP A 212 REMARK 465 PRO A 213 REMARK 465 ARG A 214 REMARK 465 ASP A 215 REMARK 465 PRO A 216 REMARK 465 SER A 217 REMARK 465 GLY A 218 REMARK 465 MET B -20 REMARK 465 ALA B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 MET B -12 REMARK 465 GLY B -11 REMARK 465 THR B -10 REMARK 465 LEU B -9 REMARK 465 GLU B -8 REMARK 465 ALA B -7 REMARK 465 GLN B -6 REMARK 465 THR B -5 REMARK 465 GLN B -4 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 ASP B 212 REMARK 465 PRO B 213 REMARK 465 ARG B 214 REMARK 465 ASP B 215 REMARK 465 PRO B 216 REMARK 465 SER B 217 REMARK 465 GLY B 218 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 LYS A 62 CG CD CE NZ REMARK 470 ARG A 138 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 297 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 55 CG CD CE NZ REMARK 470 LYS B 62 CG CD CE NZ REMARK 470 LYS B 150 CG CD CE NZ REMARK 470 LYS B 221 CG CD CE NZ REMARK 470 LYS B 228 CG CD CE NZ REMARK 470 LYS B 231 CG CD CE NZ REMARK 470 GLN B 280 CG CD OE1 NE2 REMARK 470 ARG B 297 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 44 O HOH B 445 2.15 REMARK 500 OD1 ASP A 113 O HOH A 548 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 42 15.24 -140.40 REMARK 500 PRO A 106 39.32 -79.04 REMARK 500 HIS A 184 74.39 -155.94 REMARK 500 SER A 204 52.33 38.95 REMARK 500 ASN B 42 11.99 -143.10 REMARK 500 PRO B 106 41.41 -79.80 REMARK 500 HIS B 184 72.10 -155.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP B 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GILAA.01452.A RELATED DB: TARGETDB DBREF 3KRB A 1 313 UNP A8BGX6 A8BGX6_GIALA 1 313 DBREF 3KRB B 1 313 UNP A8BGX6 A8BGX6_GIALA 1 313 SEQADV 3KRB MET A -20 UNP A8BGX6 EXPRESSION TAG SEQADV 3KRB ALA A -19 UNP A8BGX6 EXPRESSION TAG SEQADV 3KRB HIS A -18 UNP A8BGX6 EXPRESSION TAG SEQADV 3KRB HIS A -17 UNP A8BGX6 EXPRESSION TAG SEQADV 3KRB HIS A -16 UNP A8BGX6 EXPRESSION TAG SEQADV 3KRB HIS A -15 UNP A8BGX6 EXPRESSION TAG SEQADV 3KRB HIS A -14 UNP A8BGX6 EXPRESSION TAG SEQADV 3KRB HIS A -13 UNP A8BGX6 EXPRESSION TAG SEQADV 3KRB MET A -12 UNP A8BGX6 EXPRESSION TAG SEQADV 3KRB GLY A -11 UNP A8BGX6 EXPRESSION TAG SEQADV 3KRB THR A -10 UNP A8BGX6 EXPRESSION TAG SEQADV 3KRB LEU A -9 UNP A8BGX6 EXPRESSION TAG SEQADV 3KRB GLU A -8 UNP A8BGX6 EXPRESSION TAG SEQADV 3KRB ALA A -7 UNP A8BGX6 EXPRESSION TAG SEQADV 3KRB GLN A -6 UNP A8BGX6 EXPRESSION TAG SEQADV 3KRB THR A -5 UNP A8BGX6 EXPRESSION TAG SEQADV 3KRB GLN A -4 UNP A8BGX6 EXPRESSION TAG SEQADV 3KRB GLY A -3 UNP A8BGX6 EXPRESSION TAG SEQADV 3KRB PRO A -2 UNP A8BGX6 EXPRESSION TAG SEQADV 3KRB GLY A -1 UNP A8BGX6 EXPRESSION TAG SEQADV 3KRB SER A 0 UNP A8BGX6 EXPRESSION TAG SEQADV 3KRB MET B -20 UNP A8BGX6 EXPRESSION TAG SEQADV 3KRB ALA B -19 UNP A8BGX6 EXPRESSION TAG SEQADV 3KRB HIS B -18 UNP A8BGX6 EXPRESSION TAG SEQADV 3KRB HIS B -17 UNP A8BGX6 EXPRESSION TAG SEQADV 3KRB HIS B -16 UNP A8BGX6 EXPRESSION TAG SEQADV 3KRB HIS B -15 UNP A8BGX6 EXPRESSION TAG SEQADV 3KRB HIS B -14 UNP A8BGX6 EXPRESSION TAG SEQADV 3KRB HIS B -13 UNP A8BGX6 EXPRESSION TAG SEQADV 3KRB MET B -12 UNP A8BGX6 EXPRESSION TAG SEQADV 3KRB GLY B -11 UNP A8BGX6 EXPRESSION TAG SEQADV 3KRB THR B -10 UNP A8BGX6 EXPRESSION TAG SEQADV 3KRB LEU B -9 UNP A8BGX6 EXPRESSION TAG SEQADV 3KRB GLU B -8 UNP A8BGX6 EXPRESSION TAG SEQADV 3KRB ALA B -7 UNP A8BGX6 EXPRESSION TAG SEQADV 3KRB GLN B -6 UNP A8BGX6 EXPRESSION TAG SEQADV 3KRB THR B -5 UNP A8BGX6 EXPRESSION TAG SEQADV 3KRB GLN B -4 UNP A8BGX6 EXPRESSION TAG SEQADV 3KRB GLY B -3 UNP A8BGX6 EXPRESSION TAG SEQADV 3KRB PRO B -2 UNP A8BGX6 EXPRESSION TAG SEQADV 3KRB GLY B -1 UNP A8BGX6 EXPRESSION TAG SEQADV 3KRB SER B 0 UNP A8BGX6 EXPRESSION TAG SEQRES 1 A 334 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 334 ALA GLN THR GLN GLY PRO GLY SER MET GLN TYR PRO PRO SEQRES 3 A 334 ARG LEU GLY PHE GLY THR TRP GLN ALA PRO PRO GLU ALA SEQRES 4 A 334 VAL GLN THR ALA VAL GLU THR ALA LEU MET THR GLY TYR SEQRES 5 A 334 ARG HIS ILE ASP CYS ALA TYR VAL TYR GLN ASN GLU GLU SEQRES 6 A 334 ALA ILE GLY ARG ALA PHE GLY LYS ILE PHE LYS ASP ALA SEQRES 7 A 334 SER SER GLY ILE LYS ARG GLU ASP VAL TRP ILE THR SER SEQRES 8 A 334 LYS LEU TRP ASN TYR ASN HIS ARG PRO GLU LEU VAL ARG SEQRES 9 A 334 GLU GLN CYS LYS LYS THR MET SER ASP LEU GLN VAL ASP SEQRES 10 A 334 TYR LEU ASP LEU PHE LEU VAL HIS TRP PRO LEU ALA PHE SEQRES 11 A 334 VAL ARG ASN ASP VAL GLY ASP LEU PHE PRO LYS ASP ALA SEQRES 12 A 334 GLU GLY ARG ALA MET LEU GLU LYS VAL PRO LEU ALA ASP SEQRES 13 A 334 THR TRP ARG ALA MET GLU GLN LEU VAL GLU GLU GLY LEU SEQRES 14 A 334 VAL LYS HIS ILE GLY VAL SER ASN TYR THR VAL PRO LEU SEQRES 15 A 334 LEU ALA ASP LEU LEU ASN TYR ALA LYS ILE LYS PRO LEU SEQRES 16 A 334 VAL ASN GLN ILE GLU ILE HIS PRO TRP HIS PRO ASN ASP SEQRES 17 A 334 ALA THR VAL LYS PHE CYS LEU ASP ASN GLY ILE GLY VAL SEQRES 18 A 334 THR ALA TYR SER PRO MET GLY GLY SER TYR ALA ASP PRO SEQRES 19 A 334 ARG ASP PRO SER GLY THR GLN LYS ASN VAL ILE LEU GLU SEQRES 20 A 334 CYS LYS THR LEU LYS ALA ILE ALA ASP ALA LYS GLY THR SEQRES 21 A 334 SER PRO HIS CYS VAL ALA LEU ALA TRP HIS VAL LYS LYS SEQRES 22 A 334 TRP ASN THR SER MET TYR SER VAL ILE PRO LYS SER GLN SEQRES 23 A 334 THR PRO ALA ARG ILE GLU ALA ASN PHE LYS CYS THR GLU SEQRES 24 A 334 VAL GLN LEU SER ASP ASP ASP MET ASP ALA ILE ASN ASN SEQRES 25 A 334 ILE HIS LEU ASN LYS ARG ILE ARG PHE CYS ASP PRO ALA SEQRES 26 A 334 ILE PHE TRP LYS VAL PRO LEU PHE ASP SEQRES 1 B 334 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 B 334 ALA GLN THR GLN GLY PRO GLY SER MET GLN TYR PRO PRO SEQRES 3 B 334 ARG LEU GLY PHE GLY THR TRP GLN ALA PRO PRO GLU ALA SEQRES 4 B 334 VAL GLN THR ALA VAL GLU THR ALA LEU MET THR GLY TYR SEQRES 5 B 334 ARG HIS ILE ASP CYS ALA TYR VAL TYR GLN ASN GLU GLU SEQRES 6 B 334 ALA ILE GLY ARG ALA PHE GLY LYS ILE PHE LYS ASP ALA SEQRES 7 B 334 SER SER GLY ILE LYS ARG GLU ASP VAL TRP ILE THR SER SEQRES 8 B 334 LYS LEU TRP ASN TYR ASN HIS ARG PRO GLU LEU VAL ARG SEQRES 9 B 334 GLU GLN CYS LYS LYS THR MET SER ASP LEU GLN VAL ASP SEQRES 10 B 334 TYR LEU ASP LEU PHE LEU VAL HIS TRP PRO LEU ALA PHE SEQRES 11 B 334 VAL ARG ASN ASP VAL GLY ASP LEU PHE PRO LYS ASP ALA SEQRES 12 B 334 GLU GLY ARG ALA MET LEU GLU LYS VAL PRO LEU ALA ASP SEQRES 13 B 334 THR TRP ARG ALA MET GLU GLN LEU VAL GLU GLU GLY LEU SEQRES 14 B 334 VAL LYS HIS ILE GLY VAL SER ASN TYR THR VAL PRO LEU SEQRES 15 B 334 LEU ALA ASP LEU LEU ASN TYR ALA LYS ILE LYS PRO LEU SEQRES 16 B 334 VAL ASN GLN ILE GLU ILE HIS PRO TRP HIS PRO ASN ASP SEQRES 17 B 334 ALA THR VAL LYS PHE CYS LEU ASP ASN GLY ILE GLY VAL SEQRES 18 B 334 THR ALA TYR SER PRO MET GLY GLY SER TYR ALA ASP PRO SEQRES 19 B 334 ARG ASP PRO SER GLY THR GLN LYS ASN VAL ILE LEU GLU SEQRES 20 B 334 CYS LYS THR LEU LYS ALA ILE ALA ASP ALA LYS GLY THR SEQRES 21 B 334 SER PRO HIS CYS VAL ALA LEU ALA TRP HIS VAL LYS LYS SEQRES 22 B 334 TRP ASN THR SER MET TYR SER VAL ILE PRO LYS SER GLN SEQRES 23 B 334 THR PRO ALA ARG ILE GLU ALA ASN PHE LYS CYS THR GLU SEQRES 24 B 334 VAL GLN LEU SER ASP ASP ASP MET ASP ALA ILE ASN ASN SEQRES 25 B 334 ILE HIS LEU ASN LYS ARG ILE ARG PHE CYS ASP PRO ALA SEQRES 26 B 334 ILE PHE TRP LYS VAL PRO LEU PHE ASP HET NAP A 400 48 HET UNX A 402 1 HET EDO A 401 4 HET EDO B 401 4 HET NAP B 400 48 HET UNX B 402 1 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM UNX UNKNOWN ATOM OR ION HETNAM EDO 1,2-ETHANEDIOL HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 4 UNX 2(X) FORMUL 5 EDO 2(C2 H6 O2) FORMUL 9 HOH *661(H2 O) HELIX 1 1 PRO A 15 GLY A 30 1 16 HELIX 2 2 ALA A 37 GLN A 41 5 5 HELIX 3 3 ASN A 42 ASP A 56 1 15 HELIX 4 4 LYS A 62 VAL A 66 5 5 HELIX 5 5 TRP A 73 HIS A 77 5 5 HELIX 6 6 ARG A 78 GLU A 80 5 3 HELIX 7 7 LEU A 81 GLN A 94 1 14 HELIX 8 8 PRO A 132 GLU A 146 1 15 HELIX 9 9 THR A 158 ALA A 169 1 12 HELIX 10 10 ASN A 186 ASN A 196 1 11 HELIX 11 11 ASN A 222 GLU A 226 5 5 HELIX 12 12 CYS A 227 GLY A 238 1 12 HELIX 13 13 SER A 240 TRP A 253 1 14 HELIX 14 14 THR A 266 PHE A 274 1 9 HELIX 15 15 LYS A 275 VAL A 279 5 5 HELIX 16 16 SER A 282 LYS A 296 1 15 HELIX 17 17 ASP A 302 TRP A 307 1 6 HELIX 18 18 PRO B 15 GLY B 30 1 16 HELIX 19 19 ALA B 37 GLN B 41 5 5 HELIX 20 20 ASN B 42 LYS B 55 1 14 HELIX 21 21 ASP B 56 GLY B 60 5 5 HELIX 22 22 LYS B 62 VAL B 66 5 5 HELIX 23 23 TRP B 73 HIS B 77 5 5 HELIX 24 24 ARG B 78 PRO B 79 5 2 HELIX 25 25 GLU B 80 GLN B 94 1 15 HELIX 26 26 PRO B 132 GLU B 146 1 15 HELIX 27 27 THR B 158 ALA B 169 1 12 HELIX 28 28 ASN B 186 ASN B 196 1 11 HELIX 29 29 ASN B 222 GLU B 226 5 5 HELIX 30 30 CYS B 227 GLY B 238 1 12 HELIX 31 31 SER B 240 TRP B 253 1 14 HELIX 32 32 THR B 266 PHE B 274 1 9 HELIX 33 33 LYS B 275 VAL B 279 5 5 HELIX 34 34 SER B 282 ASN B 291 1 10 HELIX 35 35 ASN B 291 LYS B 296 1 6 HELIX 36 36 ASP B 302 TRP B 307 1 6 SHEET 1 A 8 PHE A 9 GLY A 10 0 SHEET 2 A 8 HIS A 33 ASP A 35 1 O ASP A 35 N PHE A 9 SHEET 3 A 8 TRP A 67 LEU A 72 1 O TRP A 67 N ILE A 34 SHEET 4 A 8 LEU A 98 VAL A 103 1 O LEU A 102 N LEU A 72 SHEET 5 A 8 VAL A 149 SER A 155 1 O LYS A 150 N LEU A 98 SHEET 6 A 8 VAL A 175 GLU A 179 1 O VAL A 175 N VAL A 154 SHEET 7 A 8 GLY A 199 TYR A 203 1 O TYR A 203 N ILE A 178 SHEET 8 A 8 TYR A 258 VAL A 260 1 O SER A 259 N ALA A 202 SHEET 1 B 8 PHE B 9 GLY B 10 0 SHEET 2 B 8 HIS B 33 ASP B 35 1 O ASP B 35 N PHE B 9 SHEET 3 B 8 TRP B 67 LEU B 72 1 O TRP B 67 N ILE B 34 SHEET 4 B 8 LEU B 98 VAL B 103 1 O LEU B 102 N LEU B 72 SHEET 5 B 8 VAL B 149 SER B 155 1 O LYS B 150 N LEU B 98 SHEET 6 B 8 VAL B 175 GLU B 179 1 O VAL B 175 N VAL B 154 SHEET 7 B 8 GLY B 199 TYR B 203 1 O TYR B 203 N ILE B 178 SHEET 8 B 8 TYR B 258 VAL B 260 1 O SER B 259 N ALA B 202 SITE 1 AC1 34 GLY A 10 THR A 11 TRP A 12 ASP A 35 SITE 2 AC1 34 TYR A 40 HIS A 104 SER A 155 ASN A 156 SITE 3 AC1 34 GLN A 177 TYR A 203 SER A 204 PRO A 205 SITE 4 AC1 34 MET A 206 GLY A 207 GLY A 208 SER A 209 SITE 5 AC1 34 ASN A 222 HIS A 242 ILE A 261 PRO A 262 SITE 6 AC1 34 LYS A 263 SER A 264 GLN A 265 THR A 266 SITE 7 AC1 34 ARG A 269 ASN A 273 HOH A 326 HOH A 438 SITE 8 AC1 34 HOH A 441 HOH A 453 HOH A 573 HOH A 589 SITE 9 AC1 34 HOH A 600 HOH A 693 SITE 1 AC2 5 TYR A 38 LYS A 88 HOH A 649 GLU B 44 SITE 2 AC2 5 ARG B 48 SITE 1 AC3 33 GLY B 10 THR B 11 TRP B 12 ASP B 35 SITE 2 AC3 33 TYR B 40 HIS B 104 SER B 155 ASN B 156 SITE 3 AC3 33 GLN B 177 TYR B 203 SER B 204 PRO B 205 SITE 4 AC3 33 MET B 206 GLY B 207 GLY B 208 SER B 209 SITE 5 AC3 33 ASN B 222 HIS B 242 ILE B 261 PRO B 262 SITE 6 AC3 33 LYS B 263 SER B 264 GLN B 265 THR B 266 SITE 7 AC3 33 ARG B 269 ASN B 273 HOH B 323 HOH B 362 SITE 8 AC3 33 HOH B 418 HOH B 447 HOH B 451 HOH B 496 SITE 9 AC3 33 HOH B 616 SITE 1 AC4 4 GLU A 44 HOH A 457 TYR B 38 LYS B 88 CRYST1 196.770 66.090 56.290 90.00 92.26 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005082 0.000000 0.000201 0.00000 SCALE2 0.000000 0.015131 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017779 0.00000