HEADER LIGASE 24-NOV-09 3KT0
TITLE CRYSTAL STRUCTURE OF S. CEREVISIAE TRYPTOPHANYL-TRNA SYNTHETASE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: TRYPTOPHANYL-TRNA SYNTHETASE, CYTOPLASMIC;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: TRYPTOPHAN--TRNA LIGASE, TRPRS;
COMPND 5 EC: 6.1.1.2;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE;
SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST;
SOURCE 4 ORGANISM_TAXID: 4932;
SOURCE 5 GENE: TRPS;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3E
KEYWDS TRYPTOPHANYL-TRNA SYNTHETASE, ROSSMANN FOLD, S. CEREVISIAE,
KEYWDS 2 AMINOACYL-TRNA SYNTHETASE, ATP-BINDING, CYTOPLASM, LIGASE,
KEYWDS 3 NUCLEOTIDE-BINDING, PROTEIN BIOSYNTHESIS
EXPDTA X-RAY DIFFRACTION
AUTHOR M.ZHOU,X.DONG,C.ZHONG,N.SHEN,J.DING
REVDAT 4 01-NOV-23 3KT0 1 REMARK SEQADV
REVDAT 3 01-NOV-17 3KT0 1 REMARK
REVDAT 2 16-JUN-10 3KT0 1 JRNL
REVDAT 1 16-FEB-10 3KT0 0
JRNL AUTH M.ZHOU,X.DONG,N.SHEN,C.ZHONG,J.DING
JRNL TITL CRYSTAL STRUCTURES OF SACCHAROMYCES CEREVISIAE
JRNL TITL 2 TRYPTOPHANYL-TRNA SYNTHETASE: NEW INSIGHTS INTO THE
JRNL TITL 3 MECHANISM OF TRYPTOPHAN ACTIVATION AND IMPLICATIONS FOR
JRNL TITL 4 ANTI-FUNGAL DRUG DESIGN
JRNL REF NUCLEIC ACIDS RES. V. 38 3399 2010
JRNL REFN ISSN 0305-1048
JRNL PMID 20123733
JRNL DOI 10.1093/NAR/GKP1254
REMARK 2
REMARK 2 RESOLUTION. 2.10 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.2.0019
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.45
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8
REMARK 3 NUMBER OF REFLECTIONS : 29427
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.208
REMARK 3 R VALUE (WORKING SET) : 0.207
REMARK 3 FREE R VALUE : 0.238
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 1471
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16
REMARK 3 REFLECTION IN BIN (WORKING SET) : 2058
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.20
REMARK 3 BIN R VALUE (WORKING SET) : 0.2370
REMARK 3 BIN FREE R VALUE SET COUNT : 121
REMARK 3 BIN FREE R VALUE : 0.2680
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 3025
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 14
REMARK 3 SOLVENT ATOMS : 140
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.43
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 1.88000
REMARK 3 B22 (A**2) : 1.88000
REMARK 3 B33 (A**2) : -3.76000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): NULL
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.174
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.117
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.665
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3117 ; 0.008 ; 0.022
REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4200 ; 1.075 ; 1.965
REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 371 ; 5.283 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 150 ;33.777 ;24.133
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 549 ;14.258 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;12.437 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 448 ; 0.076 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2366 ; 0.003 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1466 ; 0.193 ; 0.200
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2154 ; 0.307 ; 0.200
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 161 ; 0.120 ; 0.200
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 66 ; 0.158 ; 0.200
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.086 ; 0.200
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1918 ; 1.456 ; 1.500
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3017 ; 1.950 ; 2.000
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1341 ; 2.486 ; 3.000
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1183 ; 3.948 ; 4.500
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3259 ; 1.913 ; 3.000
REMARK 3 SPHERICITY; FREE ATOMS (A**2): 140 ;10.112 ; 3.000
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3040 ; 1.157 ; 3.000
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 3KT0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-NOV-09.
REMARK 100 THE DEPOSITION ID IS D_1000056410.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 10-JUN-06
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 6.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : PHOTON FACTORY
REMARK 200 BEAMLINE : BL-6A
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4R
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000
REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29469
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6
REMARK 200 DATA REDUNDANCY : 9.100
REMARK 200 R MERGE (I) : 0.10200
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.2000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18
REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5
REMARK 200 DATA REDUNDANCY IN SHELL : 9.50
REMARK 200 R MERGE FOR SHELL (I) : 0.58600
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: CNS
REMARK 200 STARTING MODEL: PDB ENTRY 1O5T
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 49.59
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES BUFFER, 0.05M CSCL, 30% V/V
REMARK 280 JEFFAMINE M-600 REAGENT, PH 6.5, VAPOR DIFFUSION, HANGING DROP,
REMARK 280 TEMPERATURE 277K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z+1/2
REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4
REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4
REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4
REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4
REMARK 290 7555 Y,X,-Z
REMARK 290 8555 -Y,-X,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 156.89200
REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 27.95600
REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 27.95600
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 235.33800
REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 27.95600
REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 27.95600
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 78.44600
REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 27.95600
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 27.95600
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 235.33800
REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 27.95600
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 27.95600
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 78.44600
REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 156.89200
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 2960 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 31760 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 1
REMARK 465 SER A 2
REMARK 465 ASN A 3
REMARK 465 ASP A 4
REMARK 465 GLU A 5
REMARK 465 THR A 6
REMARK 465 VAL A 7
REMARK 465 GLU A 8
REMARK 465 LYS A 9
REMARK 465 VAL A 10
REMARK 465 THR A 11
REMARK 465 GLN A 12
REMARK 465 GLN A 13
REMARK 465 VAL A 14
REMARK 465 SER A 15
REMARK 465 GLU A 16
REMARK 465 LEU A 17
REMARK 465 LYS A 18
REMARK 465 SER A 19
REMARK 465 THR A 20
REMARK 465 ASP A 21
REMARK 465 VAL A 22
REMARK 465 LYS A 23
REMARK 465 GLU A 24
REMARK 465 GLN A 25
REMARK 465 VAL A 26
REMARK 465 VAL A 27
REMARK 465 THR A 28
REMARK 465 PRO A 29
REMARK 465 TRP A 30
REMARK 465 ASP A 31
REMARK 465 VAL A 32
REMARK 465 GLU A 33
REMARK 465 GLY A 34
REMARK 465 GLY A 35
REMARK 465 VAL A 36
REMARK 465 ASP A 37
REMARK 465 GLU A 38
REMARK 465 GLN A 39
REMARK 465 GLY A 40
REMARK 465 ARG A 41
REMARK 465 ALA A 42
REMARK 465 GLN A 43
REMARK 465 ASN A 44
REMARK 465 SER A 292
REMARK 465 THR A 293
REMARK 465 THR A 294
REMARK 465 LYS A 295
REMARK 465 MET A 296
REMARK 465 SER A 297
REMARK 465 ALA A 298
REMARK 465 SER A 299
REMARK 465 LYS A 426
REMARK 465 THR A 427
REMARK 465 LYS A 428
REMARK 465 GLN A 429
REMARK 465 GLU A 430
REMARK 465 LYS A 431
REMARK 465 LYS A 432
REMARK 465 HIS A 433
REMARK 465 HIS A 434
REMARK 465 HIS A 435
REMARK 465 HIS A 436
REMARK 465 HIS A 437
REMARK 465 HIS A 438
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASP A 355 90.09 -166.04
REMARK 500
REMARK 500 REMARK: NULL
REMARK 600
REMARK 600 HETEROGEN
REMARK 600
REMARK 600 THE LIGAND EMN IS A PART OF JEFFAMINE M-600 REAGENT.
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EMN A 439
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 3KT3 RELATED DB: PDB
REMARK 900 THE SAME PROTEIN IN COMPLEX WITH TRPAMP
REMARK 900 RELATED ID: 3KT6 RELATED DB: PDB
REMARK 900 THE SAME PROTEIN IN COMPLEX WITH TRP
REMARK 900 RELATED ID: 3KT8 RELATED DB: PDB
REMARK 900 THE SAME PROTEIN IN COMPLEX WITH L-TRYPTOPHANAMIDE
DBREF 3KT0 A 1 432 UNP Q12109 SYWC_YEAST 1 432
SEQADV 3KT0 HIS A 433 UNP Q12109 EXPRESSION TAG
SEQADV 3KT0 HIS A 434 UNP Q12109 EXPRESSION TAG
SEQADV 3KT0 HIS A 435 UNP Q12109 EXPRESSION TAG
SEQADV 3KT0 HIS A 436 UNP Q12109 EXPRESSION TAG
SEQADV 3KT0 HIS A 437 UNP Q12109 EXPRESSION TAG
SEQADV 3KT0 HIS A 438 UNP Q12109 EXPRESSION TAG
SEQRES 1 A 438 MET SER ASN ASP GLU THR VAL GLU LYS VAL THR GLN GLN
SEQRES 2 A 438 VAL SER GLU LEU LYS SER THR ASP VAL LYS GLU GLN VAL
SEQRES 3 A 438 VAL THR PRO TRP ASP VAL GLU GLY GLY VAL ASP GLU GLN
SEQRES 4 A 438 GLY ARG ALA GLN ASN ILE ASP TYR ASP LYS LEU ILE LYS
SEQRES 5 A 438 GLN PHE GLY THR LYS PRO VAL ASN GLU GLU THR LEU LYS
SEQRES 6 A 438 ARG PHE LYS GLN VAL THR GLY ARG GLU PRO HIS HIS PHE
SEQRES 7 A 438 LEU ARG LYS GLY LEU PHE PHE SER GLU ARG ASP PHE THR
SEQRES 8 A 438 LYS ILE LEU ASP LEU TYR GLU GLN GLY LYS PRO PHE PHE
SEQRES 9 A 438 LEU TYR THR GLY ARG GLY PRO SER SER ASP SER MET HIS
SEQRES 10 A 438 LEU GLY HIS MET ILE PRO PHE VAL PHE THR LYS TRP LEU
SEQRES 11 A 438 GLN GLU VAL PHE ASP VAL PRO LEU VAL ILE GLU LEU THR
SEQRES 12 A 438 ASP ASP GLU LYS PHE LEU PHE LYS HIS LYS LEU THR ILE
SEQRES 13 A 438 ASN ASP VAL LYS ASN PHE ALA ARG GLU ASN ALA LYS ASP
SEQRES 14 A 438 ILE ILE ALA VAL GLY PHE ASP PRO LYS ASN THR PHE ILE
SEQRES 15 A 438 PHE SER ASP LEU GLN TYR MET GLY GLY ALA PHE TYR GLU
SEQRES 16 A 438 THR VAL VAL ARG VAL SER ARG GLN ILE THR GLY SER THR
SEQRES 17 A 438 ALA LYS ALA VAL PHE GLY PHE ASN ASP SER ASP CYS ILE
SEQRES 18 A 438 GLY LYS PHE HIS PHE ALA SER ILE GLN ILE ALA THR ALA
SEQRES 19 A 438 PHE PRO SER SER PHE PRO ASN VAL LEU GLY LEU PRO ASP
SEQRES 20 A 438 LYS THR PRO CYS LEU ILE PRO CYS ALA ILE ASP GLN ASP
SEQRES 21 A 438 PRO TYR PHE ARG VAL CYS ARG ASP VAL ALA ASP LYS LEU
SEQRES 22 A 438 LYS TYR SER LYS PRO ALA LEU LEU HIS SER ARG PHE PHE
SEQRES 23 A 438 PRO ALA LEU GLN GLY SER THR THR LYS MET SER ALA SER
SEQRES 24 A 438 ASP ASP THR THR ALA ILE PHE MET THR ASP THR PRO LYS
SEQRES 25 A 438 GLN ILE GLN LYS LYS ILE ASN LYS TYR ALA PHE SER GLY
SEQRES 26 A 438 GLY GLN VAL SER ALA ASP LEU HIS ARG GLU LEU GLY GLY
SEQRES 27 A 438 ASN PRO ASP VAL ASP VAL ALA TYR GLN TYR LEU SER PHE
SEQRES 28 A 438 PHE LYS ASP ASP ASP VAL PHE LEU LYS GLU CYS TYR ASP
SEQRES 29 A 438 LYS TYR LYS SER GLY GLU LEU LEU SER GLY GLU MET LYS
SEQRES 30 A 438 LYS LEU CYS ILE GLU THR LEU GLN GLU PHE VAL LYS ALA
SEQRES 31 A 438 PHE GLN GLU ARG ARG ALA GLN VAL ASP GLU GLU THR LEU
SEQRES 32 A 438 ASP LYS PHE MET VAL PRO HIS LYS LEU VAL TRP GLY GLU
SEQRES 33 A 438 LYS GLU ARG LEU VAL ALA PRO LYS PRO LYS THR LYS GLN
SEQRES 34 A 438 GLU LYS LYS HIS HIS HIS HIS HIS HIS
HET EMN A 439 14
HETNAM EMN (2S)-1-{[(2S)-3-(2-METHOXYETHOXY)-2-
HETNAM 2 EMN METHYLPROPYL]OXY}PROPAN-2-AMINE
FORMUL 2 EMN C10 H23 N O3
FORMUL 3 HOH *140(H2 O)
HELIX 1 1 ASP A 46 GLY A 55 1 10
HELIX 2 2 ASN A 60 GLY A 72 1 13
HELIX 3 3 HIS A 76 LYS A 81 1 6
HELIX 4 4 ASP A 89 GLY A 100 1 12
HELIX 5 5 HIS A 120 ASP A 135 1 16
HELIX 6 6 THR A 143 LYS A 151 1 9
HELIX 7 7 THR A 155 ALA A 172 1 18
HELIX 8 8 ASP A 176 LYS A 178 5 3
HELIX 9 9 ASP A 185 MET A 189 1 5
HELIX 10 10 GLY A 190 ARG A 202 1 13
HELIX 11 11 THR A 205 GLY A 214 1 10
HELIX 12 12 CYS A 220 PHE A 226 1 7
HELIX 13 13 PHE A 226 THR A 233 1 8
HELIX 14 14 ALA A 234 PHE A 239 5 6
HELIX 15 15 GLN A 259 LYS A 274 1 16
HELIX 16 16 THR A 310 ALA A 322 1 13
HELIX 17 17 SER A 329 GLY A 337 1 9
HELIX 18 18 ASP A 343 LYS A 353 1 11
HELIX 19 19 ASP A 355 SER A 368 1 14
HELIX 20 20 LEU A 372 GLN A 397 1 26
HELIX 21 21 ASP A 399 VAL A 408 1 10
SHEET 1 A 7 LYS A 57 PRO A 58 0
SHEET 2 A 7 PHE A 84 ARG A 88 -1 O GLU A 87 N LYS A 57
SHEET 3 A 7 ALA A 279 SER A 283 -1 O LEU A 280 N ARG A 88
SHEET 4 A 7 CYS A 251 ALA A 256 1 N ILE A 253 O ALA A 279
SHEET 5 A 7 PHE A 104 ARG A 109 1 N TYR A 106 O LEU A 252
SHEET 6 A 7 LEU A 138 LEU A 142 1 O GLU A 141 N THR A 107
SHEET 7 A 7 THR A 180 SER A 184 1 O PHE A 183 N LEU A 142
SITE 1 AC1 5 TYR A 106 THR A 107 GLY A 108 THR A 143
SITE 2 AC1 5 GLN A 259
CRYST1 55.912 55.912 313.784 90.00 90.00 90.00 P 43 21 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.017885 0.000000 0.000000 0.00000
SCALE2 0.000000 0.017885 0.000000 0.00000
SCALE3 0.000000 0.000000 0.003187 0.00000