HEADER TRANSFERASE 24-NOV-09 3KTA TITLE STRUCTURAL BASIS FOR ADENYLATE KINASE ACTIVITY IN ABC ATPASES COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHROMOSOME SEGREGATION PROTEIN SMC; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: RESIDUES 115-296; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CHROMOSOME SEGREGATION PROTEIN SMC; COMPND 8 CHAIN: B, D; COMPND 9 FRAGMENT: RESIDUES 1120-1291; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 2261; SOURCE 4 GENE: PF1843; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 9 ORGANISM_TAXID: 2261; SOURCE 10 GENE: PF1843; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL MAINTENANCE OF CHROMOSOMES, SMC, ABC ATPASE, CFTR, KEYWDS 2 ADENYLATE KINASE, AP5A, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.LAMMENS,K.P.HOPFNER REVDAT 4 30-OCT-24 3KTA 1 REMARK SEQADV REVDAT 3 17-JUL-19 3KTA 1 REMARK LINK REVDAT 2 11-AUG-10 3KTA 1 JRNL REVDAT 1 30-JUN-10 3KTA 0 JRNL AUTH A.LAMMENS,K.P.HOPFNER JRNL TITL STRUCTURAL BASIS FOR ADENYLATE KINASE ACTIVITY IN ABC JRNL TITL 2 ATPASES. JRNL REF J.MOL.BIOL. V. 401 265 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20600125 JRNL DOI 10.1016/J.JMB.2010.06.029 REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.5_2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 84044 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 4271 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.4438 - 5.0507 0.96 2687 142 0.1901 0.1921 REMARK 3 2 5.0507 - 4.0106 1.00 2773 148 0.1442 0.1977 REMARK 3 3 4.0106 - 3.5042 1.00 2737 158 0.1508 0.1884 REMARK 3 4 3.5042 - 3.1840 1.00 2740 144 0.1627 0.1310 REMARK 3 5 3.1840 - 2.9559 1.00 2713 163 0.1735 0.2241 REMARK 3 6 2.9559 - 2.7817 1.00 2759 138 0.1769 0.1931 REMARK 3 7 2.7817 - 2.6425 1.00 2723 153 0.1777 0.1961 REMARK 3 8 2.6425 - 2.5275 0.99 2699 166 0.1743 0.2119 REMARK 3 9 2.5275 - 2.4302 1.00 2732 149 0.1785 0.2247 REMARK 3 10 2.4302 - 2.3463 0.99 2720 134 0.1882 0.2579 REMARK 3 11 2.3463 - 2.2730 0.99 2689 173 0.1854 0.2112 REMARK 3 12 2.2730 - 2.2080 0.99 2725 147 0.1795 0.1934 REMARK 3 13 2.2080 - 2.1499 0.99 2733 144 0.1743 0.2381 REMARK 3 14 2.1499 - 2.0975 0.99 2674 150 0.1755 0.1919 REMARK 3 15 2.0975 - 2.0498 0.99 2711 144 0.1729 0.1957 REMARK 3 16 2.0498 - 2.0062 0.99 2712 150 0.1732 0.2063 REMARK 3 17 2.0062 - 1.9660 0.99 2735 120 0.1809 0.2009 REMARK 3 18 1.9660 - 1.9289 0.99 2708 122 0.1755 0.2193 REMARK 3 19 1.9289 - 1.8945 0.99 2725 131 0.1800 0.2293 REMARK 3 20 1.8945 - 1.8624 0.99 2668 154 0.1904 0.2433 REMARK 3 21 1.8624 - 1.8323 0.99 2695 161 0.1929 0.2731 REMARK 3 22 1.8323 - 1.8042 0.99 2699 134 0.1866 0.2277 REMARK 3 23 1.8042 - 1.7776 0.99 2745 122 0.1962 0.2269 REMARK 3 24 1.7776 - 1.7526 0.98 2660 143 0.1870 0.2450 REMARK 3 25 1.7526 - 1.7289 0.99 2720 142 0.1899 0.2217 REMARK 3 26 1.7289 - 1.7064 0.99 2669 139 0.1965 0.2541 REMARK 3 27 1.7064 - 1.6851 0.96 2632 132 0.1970 0.2050 REMARK 3 28 1.6851 - 1.6648 0.90 2457 127 0.1925 0.2131 REMARK 3 29 1.6648 - 1.6455 0.83 2245 146 0.2010 0.2440 REMARK 3 30 1.6455 - 1.6270 0.70 1888 95 0.2306 0.2704 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 50.16 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5325 REMARK 3 ANGLE : 1.138 7174 REMARK 3 CHIRALITY : 0.074 793 REMARK 3 PLANARITY : 0.004 899 REMARK 3 DIHEDRAL : 17.383 2031 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3KTA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-DEC-09. REMARK 100 THE DEPOSITION ID IS D_1000056420. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 84052 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BISTRIS, 16% PEG3350, PH 6.6, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.05000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 LYS A 72 REMARK 465 ASN A 73 REMARK 465 GLU A 74 REMARK 465 PRO A 75 REMARK 465 ALA A 170 REMARK 465 GLU A 171 REMARK 465 TYR A 172 REMARK 465 ASP A 173 REMARK 465 SER A 174 REMARK 465 LYS A 175 REMARK 465 LYS A 176 REMARK 465 GLU A 177 REMARK 465 LYS A 178 REMARK 465 ALA A 179 REMARK 465 LEU A 180 REMARK 465 GLU A 181 REMARK 465 GLU A 182 REMARK 465 MSE B 1005 REMARK 465 GLU B 1006 REMARK 465 MSE C 1 REMARK 465 GLY C 70 REMARK 465 SER C 71 REMARK 465 LYS C 72 REMARK 465 ASN C 73 REMARK 465 GLU C 74 REMARK 465 ALA C 170 REMARK 465 GLU C 171 REMARK 465 TYR C 172 REMARK 465 ASP C 173 REMARK 465 SER C 174 REMARK 465 LYS C 175 REMARK 465 LYS C 176 REMARK 465 GLU C 177 REMARK 465 LYS C 178 REMARK 465 ALA C 179 REMARK 465 LEU C 180 REMARK 465 GLU C 181 REMARK 465 GLU C 182 REMARK 465 MSE D 1005 REMARK 465 GLU D 1006 REMARK 465 LYS D 1007 REMARK 465 GLY D 1060 REMARK 465 LYS D 1061 REMARK 465 ASP D 1062 REMARK 465 VAL D 1063 REMARK 465 LYS D 1170 REMARK 465 GLN D 1171 REMARK 465 GLY D 1172 REMARK 465 TRP D 1173 REMARK 465 GLU D 1174 REMARK 465 HIS D 1175 REMARK 465 GLY D 1176 REMARK 465 ASN D 1177 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 18 CD CE NZ REMARK 480 LYS A 56 CG CD CE NZ REMARK 480 SER A 61 OG REMARK 480 ARG A 62 NE CZ NH1 NH2 REMARK 480 ILE A 129 CD1 REMARK 480 LYS A 153 NZ REMARK 480 LYS B 1007 CB CG CD CE NZ REMARK 480 GLU B 1008 CG CD OE1 OE2 REMARK 480 LYS B 1009 CD CE NZ REMARK 480 ARG B 1015 CZ NH1 NH2 REMARK 480 ARG B 1022 NE CZ NH1 NH2 REMARK 480 GLU B 1045 CG CD OE1 OE2 REMARK 480 LYS B 1061 CD CE NZ REMARK 480 ARG B 1065 NE CZ NH1 NH2 REMARK 480 LYS B 1089 CE NZ REMARK 480 ARG B 1146 NE CZ NH1 NH2 REMARK 480 LYS B 1159 CE NZ REMARK 480 LYS B 1162 CD CE NZ REMARK 480 GLU B 1166 CD OE1 OE2 REMARK 480 LYS B 1169 CD CE NZ REMARK 480 LYS B 1170 CG CD CE NZ REMARK 480 LYS C 18 CG CD CE NZ REMARK 480 LEU C 53 CG CD1 CD2 REMARK 480 LYS C 56 CD CE NZ REMARK 480 LYS C 78 CD CE NZ REMARK 480 ARG C 111 CZ NH1 NH2 REMARK 480 SER C 112 OG REMARK 480 SER C 113 OG REMARK 480 LYS C 153 NZ REMARK 480 GLU D 1008 CB CG CD OE1 OE2 REMARK 480 LYS D 1009 CD CE NZ REMARK 480 ARG D 1015 CD NE CZ NH1 NH2 REMARK 480 ARG D 1022 NE CZ NH1 NH2 REMARK 480 LYS D 1030 CD CE NZ REMARK 480 ARG D 1038 CG CD NE CZ NH1 NH2 REMARK 480 ASN D 1043 CG OD1 ND2 REMARK 480 GLU D 1045 CB CG CD OE1 OE2 REMARK 480 LYS D 1057 CE NZ REMARK 480 LYS D 1064 CG CD CE NZ REMARK 480 GLU D 1067 OE2 REMARK 480 LYS D 1089 CD CE NZ REMARK 480 ARG D 1146 NE CZ NH1 NH2 REMARK 480 LYS D 1151 CE NZ REMARK 480 LYS D 1162 CE NZ REMARK 480 GLU D 1166 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 13 -125.79 41.39 REMARK 500 MSE A 134 39.29 72.28 REMARK 500 ASP B1062 114.33 83.80 REMARK 500 LYS C 13 -121.10 42.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 AP5 C 183 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AP5 A 183 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 184 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AP5 C 183 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 184 DBREF 3KTA A 1 182 UNP Q8TZY2 Q8TZY2_PYRFU 115 296 DBREF 3KTA B 1006 1177 UNP Q8TZY2 Q8TZY2_PYRFU 1120 1291 DBREF 3KTA C 1 182 UNP Q8TZY2 Q8TZY2_PYRFU 115 296 DBREF 3KTA D 1006 1177 UNP Q8TZY2 Q8TZY2_PYRFU 1120 1291 SEQADV 3KTA MSE B 1005 UNP Q8TZY2 INITIATING METHIONINE SEQADV 3KTA MSE D 1005 UNP Q8TZY2 INITIATING METHIONINE SEQRES 1 A 182 MSE PRO TYR ILE GLU LYS LEU GLU LEU LYS GLY PHE LYS SEQRES 2 A 182 SER TYR GLY ASN LYS LYS VAL VAL ILE PRO PHE SER LYS SEQRES 3 A 182 GLY PHE THR ALA ILE VAL GLY ALA ASN GLY SER GLY LYS SEQRES 4 A 182 SER ASN ILE GLY ASP ALA ILE LEU PHE VAL LEU GLY GLY SEQRES 5 A 182 LEU SER ALA LYS ALA MSE ARG ALA SER ARG ILE SER ASP SEQRES 6 A 182 LEU ILE PHE ALA GLY SER LYS ASN GLU PRO PRO ALA LYS SEQRES 7 A 182 TYR ALA GLU VAL ALA ILE TYR PHE ASN ASN GLU ASP ARG SEQRES 8 A 182 GLY PHE PRO ILE ASP GLU ASP GLU VAL VAL ILE ARG ARG SEQRES 9 A 182 ARG VAL TYR PRO ASP GLY ARG SER SER TYR TRP LEU ASN SEQRES 10 A 182 GLY ARG ARG ALA THR ARG SER GLU ILE LEU ASP ILE LEU SEQRES 11 A 182 THR ALA ALA MSE ILE SER PRO ASP GLY TYR ASN ILE VAL SEQRES 12 A 182 LEU GLN GLY ASP ILE THR LYS PHE ILE LYS MSE SER PRO SEQRES 13 A 182 LEU GLU ARG ARG LEU LEU ILE ASP ASP ILE SER GLY ILE SEQRES 14 A 182 ALA GLU TYR ASP SER LYS LYS GLU LYS ALA LEU GLU GLU SEQRES 1 B 173 MSE GLU LYS GLU LYS LYS ASN VAL PHE MSE ARG THR PHE SEQRES 2 B 173 GLU ALA ILE SER ARG ASN PHE SER GLU ILE PHE ALA LYS SEQRES 3 B 173 LEU SER PRO GLY GLY SER ALA ARG LEU ILE LEU GLU ASN SEQRES 4 B 173 PRO GLU ASP PRO PHE SER GLY GLY LEU GLU ILE GLU ALA SEQRES 5 B 173 LYS PRO ALA GLY LYS ASP VAL LYS ARG ILE GLU ALA MSE SEQRES 6 B 173 SER GLY GLY GLU LYS ALA LEU THR ALA LEU ALA PHE VAL SEQRES 7 B 173 PHE ALA ILE GLN LYS PHE LYS PRO ALA PRO PHE TYR LEU SEQRES 8 B 173 PHE ASP GLU ILE ASP ALA HIS LEU ASP ASP ALA ASN VAL SEQRES 9 B 173 LYS ARG VAL ALA ASP LEU ILE LYS GLU SER SER LYS GLU SEQRES 10 B 173 SER GLN PHE ILE VAL ILE THR LEU ARG ASP VAL MSE MSE SEQRES 11 B 173 ALA ASN ALA ASP LYS ILE ILE GLY VAL SER MSE ARG ASP SEQRES 12 B 173 GLY VAL SER LYS VAL VAL SER LEU SER LEU GLU LYS ALA SEQRES 13 B 173 MSE LYS ILE LEU GLU GLU ILE ARG LYS LYS GLN GLY TRP SEQRES 14 B 173 GLU HIS GLY ASN SEQRES 1 C 182 MSE PRO TYR ILE GLU LYS LEU GLU LEU LYS GLY PHE LYS SEQRES 2 C 182 SER TYR GLY ASN LYS LYS VAL VAL ILE PRO PHE SER LYS SEQRES 3 C 182 GLY PHE THR ALA ILE VAL GLY ALA ASN GLY SER GLY LYS SEQRES 4 C 182 SER ASN ILE GLY ASP ALA ILE LEU PHE VAL LEU GLY GLY SEQRES 5 C 182 LEU SER ALA LYS ALA MSE ARG ALA SER ARG ILE SER ASP SEQRES 6 C 182 LEU ILE PHE ALA GLY SER LYS ASN GLU PRO PRO ALA LYS SEQRES 7 C 182 TYR ALA GLU VAL ALA ILE TYR PHE ASN ASN GLU ASP ARG SEQRES 8 C 182 GLY PHE PRO ILE ASP GLU ASP GLU VAL VAL ILE ARG ARG SEQRES 9 C 182 ARG VAL TYR PRO ASP GLY ARG SER SER TYR TRP LEU ASN SEQRES 10 C 182 GLY ARG ARG ALA THR ARG SER GLU ILE LEU ASP ILE LEU SEQRES 11 C 182 THR ALA ALA MSE ILE SER PRO ASP GLY TYR ASN ILE VAL SEQRES 12 C 182 LEU GLN GLY ASP ILE THR LYS PHE ILE LYS MSE SER PRO SEQRES 13 C 182 LEU GLU ARG ARG LEU LEU ILE ASP ASP ILE SER GLY ILE SEQRES 14 C 182 ALA GLU TYR ASP SER LYS LYS GLU LYS ALA LEU GLU GLU SEQRES 1 D 173 MSE GLU LYS GLU LYS LYS ASN VAL PHE MSE ARG THR PHE SEQRES 2 D 173 GLU ALA ILE SER ARG ASN PHE SER GLU ILE PHE ALA LYS SEQRES 3 D 173 LEU SER PRO GLY GLY SER ALA ARG LEU ILE LEU GLU ASN SEQRES 4 D 173 PRO GLU ASP PRO PHE SER GLY GLY LEU GLU ILE GLU ALA SEQRES 5 D 173 LYS PRO ALA GLY LYS ASP VAL LYS ARG ILE GLU ALA MSE SEQRES 6 D 173 SER GLY GLY GLU LYS ALA LEU THR ALA LEU ALA PHE VAL SEQRES 7 D 173 PHE ALA ILE GLN LYS PHE LYS PRO ALA PRO PHE TYR LEU SEQRES 8 D 173 PHE ASP GLU ILE ASP ALA HIS LEU ASP ASP ALA ASN VAL SEQRES 9 D 173 LYS ARG VAL ALA ASP LEU ILE LYS GLU SER SER LYS GLU SEQRES 10 D 173 SER GLN PHE ILE VAL ILE THR LEU ARG ASP VAL MSE MSE SEQRES 11 D 173 ALA ASN ALA ASP LYS ILE ILE GLY VAL SER MSE ARG ASP SEQRES 12 D 173 GLY VAL SER LYS VAL VAL SER LEU SER LEU GLU LYS ALA SEQRES 13 D 173 MSE LYS ILE LEU GLU GLU ILE ARG LYS LYS GLN GLY TRP SEQRES 14 D 173 GLU HIS GLY ASN MODRES 3KTA MSE A 58 MET SELENOMETHIONINE MODRES 3KTA MSE A 134 MET SELENOMETHIONINE MODRES 3KTA MSE A 154 MET SELENOMETHIONINE MODRES 3KTA MSE B 1014 MET SELENOMETHIONINE MODRES 3KTA MSE B 1069 MET SELENOMETHIONINE MODRES 3KTA MSE B 1133 MET SELENOMETHIONINE MODRES 3KTA MSE B 1134 MET SELENOMETHIONINE MODRES 3KTA MSE B 1145 MET SELENOMETHIONINE MODRES 3KTA MSE B 1161 MET SELENOMETHIONINE MODRES 3KTA MSE C 58 MET SELENOMETHIONINE MODRES 3KTA MSE C 134 MET SELENOMETHIONINE MODRES 3KTA MSE C 154 MET SELENOMETHIONINE MODRES 3KTA MSE D 1014 MET SELENOMETHIONINE MODRES 3KTA MSE D 1069 MET SELENOMETHIONINE MODRES 3KTA MSE D 1133 MET SELENOMETHIONINE MODRES 3KTA MSE D 1134 MET SELENOMETHIONINE MODRES 3KTA MSE D 1145 MET SELENOMETHIONINE MODRES 3KTA MSE D 1161 MET SELENOMETHIONINE HET MSE A 58 8 HET MSE A 134 8 HET MSE A 154 8 HET MSE B1014 8 HET MSE B1069 8 HET MSE B1133 8 HET MSE B1134 8 HET MSE B1145 8 HET MSE B1161 8 HET MSE C 58 8 HET MSE C 134 8 HET MSE C 154 8 HET MSE D1014 8 HET MSE D1069 8 HET MSE D1133 8 HET MSE D1134 8 HET MSE D1145 8 HET MSE D1161 8 HET AP5 A 183 57 HET MG A 184 1 HET AP5 C 183 57 HET MG C 184 1 HETNAM MSE SELENOMETHIONINE HETNAM AP5 BIS(ADENOSINE)-5'-PENTAPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 1 MSE 18(C5 H11 N O2 SE) FORMUL 5 AP5 2(C20 H29 N10 O22 P5) FORMUL 6 MG 2(MG 2+) FORMUL 9 HOH *870(H2 O) HELIX 1 1 PHE A 12 GLY A 16 5 5 HELIX 2 2 GLY A 38 LEU A 50 1 13 HELIX 3 3 ALA A 55 ARG A 59 5 5 HELIX 4 4 ARG A 62 ILE A 67 5 6 HELIX 5 5 THR A 122 ALA A 133 1 12 HELIX 6 6 THR A 149 MSE A 154 1 6 HELIX 7 7 SER A 155 GLY A 168 1 14 HELIX 8 8 LYS B 1007 SER B 1032 1 26 HELIX 9 9 ASP B 1046 GLY B 1050 5 5 HELIX 10 10 ARG B 1065 MSE B 1069 5 5 HELIX 11 11 SER B 1070 LYS B 1089 1 20 HELIX 12 12 ASP B 1104 SER B 1119 1 16 HELIX 13 13 ARG B 1130 ALA B 1135 1 6 HELIX 14 14 SER B 1156 LYS B 1169 1 14 HELIX 15 15 PHE C 12 GLY C 16 5 5 HELIX 16 16 GLY C 38 LEU C 50 1 13 HELIX 17 17 ARG C 62 LEU C 66 5 5 HELIX 18 18 THR C 122 ALA C 133 1 12 HELIX 19 19 THR C 149 MSE C 154 1 6 HELIX 20 20 SER C 155 GLY C 168 1 14 HELIX 21 21 GLU D 1008 SER D 1032 1 25 HELIX 22 22 ASP D 1046 GLY D 1050 5 5 HELIX 23 23 ARG D 1065 MSE D 1069 5 5 HELIX 24 24 SER D 1070 LYS D 1089 1 20 HELIX 25 25 ASP D 1104 SER D 1119 1 16 HELIX 26 26 ARG D 1130 ALA D 1135 1 6 HELIX 27 27 SER D 1156 LYS D 1169 1 14 SHEET 1 A 6 VAL A 20 PRO A 23 0 SHEET 2 A 6 TYR A 3 LYS A 10 -1 N LEU A 9 O VAL A 20 SHEET 3 A 6 ALA A 80 ASN A 87 -1 O TYR A 85 N GLU A 5 SHEET 4 A 6 GLU A 99 VAL A 106 -1 O ILE A 102 N ILE A 84 SHEET 5 A 6 SER A 112 LEU A 116 -1 O SER A 113 N ARG A 105 SHEET 6 A 6 ARG A 119 ALA A 121 -1 O ARG A 119 N LEU A 116 SHEET 1 B 6 ILE A 142 VAL A 143 0 SHEET 2 B 6 PHE B1093 ASP B1097 1 O LEU B1095 N VAL A 143 SHEET 3 B 6 GLN B1123 ILE B1127 1 O ILE B1127 N PHE B1096 SHEET 4 B 6 PHE A 28 GLY A 33 1 N ILE A 31 O VAL B1126 SHEET 5 B 6 LYS B1139 ARG B1146 1 O ILE B1141 N ALA A 30 SHEET 6 B 6 VAL B1149 SER B1154 -1 O VAL B1153 N GLY B1142 SHEET 1 C 2 SER B1036 LEU B1041 0 SHEET 2 C 2 LEU B1052 LYS B1057 -1 O LYS B1057 N SER B1036 SHEET 1 D 6 VAL C 20 PRO C 23 0 SHEET 2 D 6 TYR C 3 LYS C 10 -1 N LEU C 7 O ILE C 22 SHEET 3 D 6 ALA C 80 ASN C 87 -1 O GLU C 81 N LYS C 10 SHEET 4 D 6 GLU C 99 VAL C 106 -1 O VAL C 100 N PHE C 86 SHEET 5 D 6 SER C 112 LEU C 116 -1 O SER C 113 N ARG C 105 SHEET 6 D 6 ARG C 119 ALA C 121 -1 O ALA C 121 N TYR C 114 SHEET 1 E 6 ILE C 142 VAL C 143 0 SHEET 2 E 6 PHE D1093 ASP D1097 1 O LEU D1095 N VAL C 143 SHEET 3 E 6 GLN D1123 ILE D1127 1 O ILE D1125 N TYR D1094 SHEET 4 E 6 PHE C 28 GLY C 33 1 N THR C 29 O PHE D1124 SHEET 5 E 6 LYS D1139 ARG D1146 1 O ILE D1141 N ALA C 30 SHEET 6 E 6 VAL D1149 SER D1154 -1 O VAL D1153 N GLY D1142 SHEET 1 F 2 SER D1036 LEU D1041 0 SHEET 2 F 2 LEU D1052 LYS D1057 -1 O LYS D1057 N SER D1036 LINK C MSE A 58 N ARG A 59 1555 1555 1.33 LINK C MSE A 134 N ILE A 135 1555 1555 1.34 LINK C MSE A 154 N SER A 155 1555 1555 1.33 LINK C MSE B1014 N ARG B1015 1555 1555 1.33 LINK C MSE B1069 N SER B1070 1555 1555 1.33 LINK C MSE B1134 N ALA B1135 1555 1555 1.33 LINK C MSE B1145 N ARG B1146 1555 1555 1.32 LINK C MSE B1161 N LYS B1162 1555 1555 1.33 LINK C MSE C 58 N ARG C 59 1555 1555 1.33 LINK C MSE C 134 N ILE C 135 1555 1555 1.34 LINK C MSE C 154 N SER C 155 1555 1555 1.33 LINK C MSE D1014 N ARG D1015 1555 1555 1.33 LINK C MSE D1069 N SER D1070 1555 1555 1.33 LINK C MSE D1134 N ALA D1135 1555 1555 1.33 LINK C MSE D1145 N ARG D1146 1555 1555 1.33 LINK C MSE D1161 N LYS D1162 1555 1555 1.33 SITE 1 AC1 44 LYS A 13 SER A 14 ASN A 35 GLY A 36 SITE 2 AC1 44 SER A 37 GLY A 38 LYS A 39 SER A 40 SITE 3 AC1 44 ASN A 41 ARG A 59 ASP A 65 ILE A 67 SITE 4 AC1 44 PHE A 68 ALA A 69 GLN A 145 MG A 184 SITE 5 AC1 44 HOH A 186 HOH A 187 HOH A 194 HOH A 196 SITE 6 AC1 44 HOH A 202 HOH A 230 HOH A 235 HOH A 237 SITE 7 AC1 44 HOH A 238 HOH A 239 HOH A 252 HOH A 318 SITE 8 AC1 44 HOH A 351 HOH A 353 HOH A 517 HOH A 607 SITE 9 AC1 44 HOH B 2 GLU B1098 HIS B1175 GLY B1176 SITE 10 AC1 44 ASN B1177 GLY C 146 THR C 149 LYS C 153 SITE 11 AC1 44 HOH D 374 ARG D1065 GLU D1067 LYS D1074 SITE 1 AC2 5 SER A 40 GLN A 145 AP5 A 183 HOH A 186 SITE 2 AC2 5 HOH B 2 SITE 1 AC3 38 HOH B 671 GLU B1067 ALA B1068 MSE B1069 SITE 2 AC3 38 HIS B1102 LEU B1103 ASP B1104 GLU B1174 SITE 3 AC3 38 LYS C 13 SER C 14 ALA C 34 ASN C 35 SITE 4 AC3 38 GLY C 36 SER C 37 GLY C 38 LYS C 39 SITE 5 AC3 38 SER C 40 ASN C 41 ARG C 59 SER C 64 SITE 6 AC3 38 ASP C 65 ILE C 67 PHE C 68 ALA C 69 SITE 7 AC3 38 GLN C 145 MG C 184 HOH C 185 HOH C 247 SITE 8 AC3 38 HOH C 356 HOH C 363 HOH C 515 HOH C 522 SITE 9 AC3 38 HOH C 689 HOH C 843 HOH C 844 HOH D 3 SITE 10 AC3 38 HOH D 357 GLU D1098 SITE 1 AC4 5 SER C 40 GLN C 145 AP5 C 183 HOH C 185 SITE 2 AC4 5 HOH D 3 CRYST1 65.000 86.100 70.100 90.00 116.60 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015385 0.000000 0.007704 0.00000 SCALE2 0.000000 0.011614 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015954 0.00000