data_3KWK # _entry.id 3KWK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3KWK pdb_00003kwk 10.2210/pdb3kwk/pdb RCSB RCSB056536 ? ? WWPDB D_1000056536 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 396185 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3KWK _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-12-01 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Crystal structure of Putative NADH dehydrogenase/NAD(P)H nitroreductase (NP_809094.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 1.54 A resolution ; _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3KWK _cell.length_a 42.215 _cell.length_b 42.215 _cell.length_c 186.713 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3KWK _symmetry.Int_Tables_number 96 _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative NADH dehydrogenase/NAD(P)H nitroreductase' 19899.875 1 ? ? ? ? 2 non-polymer syn 'FLAVIN MONONUCLEOTIDE' 456.344 1 ? ? ? ? 3 non-polymer syn 'UNKNOWN LIGAND' ? 1 ? ? ? ? 4 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 5 water nat water 18.015 269 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GEKGTTGTGNAALDNIFERKSVRTYLNKGVEKEKIDL(MSE)LRAG(MSE)SAPSGKDVRPWEFVVVSDRAKLDS(MSE) AAALPYAK(MSE)LTQARNAIIVCGDSARSFYWYLDCSAAAQNILLAAES(MSE)GLGAVWTAAYPYEDR(MSE)EVVRK YTHLPENILPLCVIPFGYPATKEQPKQKYDEKKIHYNQY ; _entity_poly.pdbx_seq_one_letter_code_can ;GEKGTTGTGNAALDNIFERKSVRTYLNKGVEKEKIDLMLRAGMSAPSGKDVRPWEFVVVSDRAKLDSMAAALPYAKMLTQ ARNAIIVCGDSARSFYWYLDCSAAAQNILLAAESMGLGAVWTAAYPYEDRMEVVRKYTHLPENILPLCVIPFGYPATKEQ PKQKYDEKKIHYNQY ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 396185 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLU n 1 3 LYS n 1 4 GLY n 1 5 THR n 1 6 THR n 1 7 GLY n 1 8 THR n 1 9 GLY n 1 10 ASN n 1 11 ALA n 1 12 ALA n 1 13 LEU n 1 14 ASP n 1 15 ASN n 1 16 ILE n 1 17 PHE n 1 18 GLU n 1 19 ARG n 1 20 LYS n 1 21 SER n 1 22 VAL n 1 23 ARG n 1 24 THR n 1 25 TYR n 1 26 LEU n 1 27 ASN n 1 28 LYS n 1 29 GLY n 1 30 VAL n 1 31 GLU n 1 32 LYS n 1 33 GLU n 1 34 LYS n 1 35 ILE n 1 36 ASP n 1 37 LEU n 1 38 MSE n 1 39 LEU n 1 40 ARG n 1 41 ALA n 1 42 GLY n 1 43 MSE n 1 44 SER n 1 45 ALA n 1 46 PRO n 1 47 SER n 1 48 GLY n 1 49 LYS n 1 50 ASP n 1 51 VAL n 1 52 ARG n 1 53 PRO n 1 54 TRP n 1 55 GLU n 1 56 PHE n 1 57 VAL n 1 58 VAL n 1 59 VAL n 1 60 SER n 1 61 ASP n 1 62 ARG n 1 63 ALA n 1 64 LYS n 1 65 LEU n 1 66 ASP n 1 67 SER n 1 68 MSE n 1 69 ALA n 1 70 ALA n 1 71 ALA n 1 72 LEU n 1 73 PRO n 1 74 TYR n 1 75 ALA n 1 76 LYS n 1 77 MSE n 1 78 LEU n 1 79 THR n 1 80 GLN n 1 81 ALA n 1 82 ARG n 1 83 ASN n 1 84 ALA n 1 85 ILE n 1 86 ILE n 1 87 VAL n 1 88 CYS n 1 89 GLY n 1 90 ASP n 1 91 SER n 1 92 ALA n 1 93 ARG n 1 94 SER n 1 95 PHE n 1 96 TYR n 1 97 TRP n 1 98 TYR n 1 99 LEU n 1 100 ASP n 1 101 CYS n 1 102 SER n 1 103 ALA n 1 104 ALA n 1 105 ALA n 1 106 GLN n 1 107 ASN n 1 108 ILE n 1 109 LEU n 1 110 LEU n 1 111 ALA n 1 112 ALA n 1 113 GLU n 1 114 SER n 1 115 MSE n 1 116 GLY n 1 117 LEU n 1 118 GLY n 1 119 ALA n 1 120 VAL n 1 121 TRP n 1 122 THR n 1 123 ALA n 1 124 ALA n 1 125 TYR n 1 126 PRO n 1 127 TYR n 1 128 GLU n 1 129 ASP n 1 130 ARG n 1 131 MSE n 1 132 GLU n 1 133 VAL n 1 134 VAL n 1 135 ARG n 1 136 LYS n 1 137 TYR n 1 138 THR n 1 139 HIS n 1 140 LEU n 1 141 PRO n 1 142 GLU n 1 143 ASN n 1 144 ILE n 1 145 LEU n 1 146 PRO n 1 147 LEU n 1 148 CYS n 1 149 VAL n 1 150 ILE n 1 151 PRO n 1 152 PHE n 1 153 GLY n 1 154 TYR n 1 155 PRO n 1 156 ALA n 1 157 THR n 1 158 LYS n 1 159 GLU n 1 160 GLN n 1 161 PRO n 1 162 LYS n 1 163 GLN n 1 164 LYS n 1 165 TYR n 1 166 ASP n 1 167 GLU n 1 168 LYS n 1 169 LYS n 1 170 ILE n 1 171 HIS n 1 172 TYR n 1 173 ASN n 1 174 GLN n 1 175 TYR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene BT_0181 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacteroides thetaiotaomicron VPI-5482' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 226186 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8ABC9_BACTN _struct_ref.pdbx_db_accession Q8ABC9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EKGTTGTGNAALDNIFERKSVRTYLNKGVEKEKIDLMLRAGMSAPSGKDVRPWEFVVVSDRAKLDSMAAALPYAKMLTQA RNAIIVCGDSARSFYWYLDCSAAAQNILLAAESMGLGAVWTAAYPYEDRMEVVRKYTHLPENILPLCVIPFGYPATKEQP KQKYDEKKIHYNQY ; _struct_ref.pdbx_align_begin 26 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3KWK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 175 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8ABC9 _struct_ref_seq.db_align_beg 26 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 199 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 26 _struct_ref_seq.pdbx_auth_seq_align_end 199 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3KWK _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q8ABC9 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FMN non-polymer . 'FLAVIN MONONUCLEOTIDE' 'RIBOFLAVIN MONOPHOSPHATE' 'C17 H21 N4 O9 P' 456.344 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNL non-polymer . 'UNKNOWN LIGAND' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3KWK # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.09 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 41.15 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '0.2000M NaOAc, 30.0000% PEG-4000, 0.1M TRIS pH 8.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat mirror, vertical and horizontal focussing mirrors' _diffrn_detector.pdbx_collection_date 2009-05-08 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97938 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL12-2 _diffrn_source.type 'SSRL BEAMLINE BL12-2' _diffrn_source.pdbx_wavelength 0.97938 _diffrn_source.pdbx_wavelength_list ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3KWK _reflns.d_resolution_high 1.54 _reflns.d_resolution_low 29.854 _reflns.number_obs 25905 _reflns.pdbx_Rmerge_I_obs 0.110 _reflns.pdbx_netI_over_sigmaI 11.000 _reflns.pdbx_Rsym_value 0.110 _reflns.pdbx_redundancy 6.200 _reflns.percent_possible_obs 98.600 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.54 1.58 ? 5013 ? 0.550 1.4 0.550 ? 3.10 ? 1631 87.50 1 1 1.58 1.62 ? 6205 ? 0.508 1.5 0.508 ? 3.50 ? 1759 94.80 2 1 1.62 1.67 ? 7438 ? 0.442 1.8 0.442 ? 4.20 ? 1766 99.40 3 1 1.67 1.72 ? 9219 ? 0.395 2.0 0.395 ? 5.30 ? 1732 100.00 4 1 1.72 1.78 ? 11832 ? 0.353 2.2 0.353 ? 6.90 ? 1703 100.00 5 1 1.78 1.84 ? 11711 ? 0.288 2.6 0.288 ? 7.10 ? 1658 100.00 6 1 1.84 1.91 ? 11159 ? 0.223 3.4 0.223 ? 7.10 ? 1577 100.00 7 1 1.91 1.99 ? 10884 ? 0.187 2.9 0.187 ? 7.10 ? 1533 100.00 8 1 1.99 2.08 ? 10361 ? 0.162 2.7 0.162 ? 7.10 ? 1468 100.00 9 1 2.08 2.18 ? 10049 ? 0.132 5.5 0.132 ? 7.10 ? 1425 100.00 10 1 2.18 2.30 ? 9550 ? 0.125 5.6 0.125 ? 7.00 ? 1360 100.00 11 1 2.30 2.43 ? 8967 ? 0.116 6.0 0.116 ? 7.00 ? 1275 100.00 12 1 2.43 2.60 ? 8570 ? 0.106 6.5 0.106 ? 7.00 ? 1228 100.00 13 1 2.60 2.81 ? 7928 ? 0.106 6.2 0.106 ? 6.90 ? 1148 100.00 14 1 2.81 3.08 ? 7221 ? 0.101 6.0 0.101 ? 6.90 ? 1049 100.00 15 1 3.08 3.44 ? 6603 ? 0.079 7.8 0.079 ? 6.80 ? 964 100.00 16 1 3.44 3.98 ? 5915 ? 0.063 9.8 0.063 ? 6.80 ? 876 100.00 17 1 3.98 4.87 ? 4892 ? 0.062 10.1 0.062 ? 6.50 ? 749 100.00 18 1 4.87 6.89 ? 3794 ? 0.068 9.2 0.068 ? 6.20 ? 616 100.00 19 1 6.89 29.85 ? 2043 ? 0.058 10.1 0.058 ? 5.30 ? 388 98.80 20 1 # _refine.entry_id 3KWK _refine.ls_d_res_high 1.540 _refine.ls_d_res_low 29.854 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.590 _refine.ls_number_reflns_obs 25811 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. 4. AN UNKNOWN LIGAND (UNL) WAS MODELED IN THE PUTATIVE ACTIVE SITE. CHLORIDE MODELED IS PRESENT IN CRYSTALLIZATION CONDITIONS. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.147 _refine.ls_R_factor_R_work 0.146 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.176 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1313 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 12.866 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.030 _refine.aniso_B[2][2] 0.030 _refine.aniso_B[3][3] -0.070 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.970 _refine.correlation_coeff_Fo_to_Fc_free 0.961 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.072 _refine.pdbx_overall_ESU_R_Free 0.074 _refine.overall_SU_ML 0.046 _refine.overall_SU_B 2.709 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 56.52 _refine.B_iso_min 2.85 _refine.occupancy_max 1.00 _refine.occupancy_min 0.25 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1333 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 34 _refine_hist.number_atoms_solvent 269 _refine_hist.number_atoms_total 1636 _refine_hist.d_res_high 1.540 _refine_hist.d_res_low 29.854 # loop_ _refine_ls_restr.type _refine_ls_restr.pdbx_refine_id _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 'X-RAY DIFFRACTION' 1505 0.018 0.022 ? ? r_bond_other_d 'X-RAY DIFFRACTION' 1044 0.001 0.020 ? ? r_angle_refined_deg 'X-RAY DIFFRACTION' 2051 1.564 1.994 ? ? r_angle_other_deg 'X-RAY DIFFRACTION' 2547 0.919 3.000 ? ? r_dihedral_angle_1_deg 'X-RAY DIFFRACTION' 187 5.713 5.000 ? ? r_dihedral_angle_2_deg 'X-RAY DIFFRACTION' 65 34.200 23.538 ? ? r_dihedral_angle_3_deg 'X-RAY DIFFRACTION' 268 12.520 15.000 ? ? r_dihedral_angle_4_deg 'X-RAY DIFFRACTION' 11 19.801 15.000 ? ? r_chiral_restr 'X-RAY DIFFRACTION' 213 0.095 0.200 ? ? r_gen_planes_refined 'X-RAY DIFFRACTION' 1691 0.009 0.021 ? ? r_gen_planes_other 'X-RAY DIFFRACTION' 305 0.002 0.020 ? ? r_mcbond_it 'X-RAY DIFFRACTION' 905 1.454 3.000 ? ? r_mcbond_other 'X-RAY DIFFRACTION' 356 0.439 3.000 ? ? r_mcangle_it 'X-RAY DIFFRACTION' 1465 2.379 5.000 ? ? r_scbond_it 'X-RAY DIFFRACTION' 600 4.223 8.000 ? ? r_scangle_it 'X-RAY DIFFRACTION' 586 6.297 11.000 ? ? # _refine_ls_shell.d_res_high 1.540 _refine_ls_shell.d_res_low 1.580 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 86.740 _refine_ls_shell.number_reflns_R_work 1554 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.257 _refine_ls_shell.R_factor_R_free 0.276 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 75 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1629 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3KWK _struct.title ;Crystal structure of Putative NADH dehydrogenase/NAD(P)H nitroreductase (NP_809094.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 1.54 A resolution ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;Putative NADH dehydrogenase/NAD(P)H nitroreductase, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, OXIDOREDUCTASE ; _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.entry_id 3KWK # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_biol.id 1 _struct_biol.details ;SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING SUPPORTS THE ASSIGNMENT OF A DIMER AS THE SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 10 ? ARG A 19 ? ASN A 34 ARG A 43 1 ? 10 HELX_P HELX_P2 2 GLU A 31 ? MSE A 43 ? GLU A 55 MSE A 67 1 ? 13 HELX_P HELX_P3 3 SER A 47 ? VAL A 51 ? SER A 71 VAL A 75 5 ? 5 HELX_P HELX_P4 4 ASP A 61 ? LEU A 72 ? ASP A 85 LEU A 96 1 ? 12 HELX_P HELX_P5 5 ALA A 75 ? ALA A 81 ? ALA A 99 ALA A 105 5 ? 7 HELX_P HELX_P6 6 TYR A 96 ? MSE A 115 ? TYR A 120 MSE A 139 1 ? 20 HELX_P HELX_P7 7 TYR A 127 ? HIS A 139 ? TYR A 151 HIS A 163 1 ? 13 HELX_P HELX_P8 8 ASP A 166 ? ILE A 170 ? ASP A 190 ILE A 194 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A MSE 38 C ? ? ? 1_555 A LEU 39 N ? ? A MSE 62 A LEU 63 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale2 covale both ? A MSE 43 C A ? ? 1_555 A SER 44 N ? ? A MSE 67 A SER 68 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale3 covale both ? A MSE 43 C B ? ? 1_555 A SER 44 N ? ? A MSE 67 A SER 68 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale4 covale both ? A MSE 68 C ? ? ? 1_555 A ALA 69 N ? ? A MSE 92 A ALA 93 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale5 covale both ? A MSE 77 C ? ? ? 1_555 A LEU 78 N ? ? A MSE 101 A LEU 102 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale6 covale both ? A MSE 115 C ? ? ? 1_555 A GLY 116 N ? ? A MSE 139 A GLY 140 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale7 covale both ? A MSE 131 C ? ? ? 1_555 A GLU 132 N ? ? A MSE 155 A GLU 156 1_555 ? ? ? ? ? ? ? 1.333 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id TYR _struct_mon_prot_cis.label_seq_id 125 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id TYR _struct_mon_prot_cis.auth_seq_id 149 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 126 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 150 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 6.39 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TRP A 54 ? VAL A 59 ? TRP A 78 VAL A 83 A 2 ASN A 83 ? ASP A 90 ? ASN A 107 ASP A 114 A 3 ILE A 144 ? GLY A 153 ? ILE A 168 GLY A 177 A 4 GLY A 118 ? ALA A 119 ? GLY A 142 ALA A 143 B 1 TRP A 54 ? VAL A 59 ? TRP A 78 VAL A 83 B 2 ASN A 83 ? ASP A 90 ? ASN A 107 ASP A 114 B 3 ILE A 144 ? GLY A 153 ? ILE A 168 GLY A 177 B 4 THR A 122 ? ALA A 123 ? THR A 146 ALA A 147 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 59 ? N VAL A 83 O ALA A 84 ? O ALA A 108 A 2 3 N VAL A 87 ? N VAL A 111 O LEU A 147 ? O LEU A 171 A 3 4 O GLY A 153 ? O GLY A 177 N GLY A 118 ? N GLY A 142 B 1 2 N VAL A 59 ? N VAL A 83 O ALA A 84 ? O ALA A 108 B 2 3 N VAL A 87 ? N VAL A 111 O LEU A 147 ? O LEU A 171 B 3 4 O VAL A 149 ? O VAL A 173 N THR A 122 ? N THR A 146 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A FMN 300 ? 22 'BINDING SITE FOR RESIDUE FMN A 300' AC2 Software A CL 2 ? 4 'BINDING SITE FOR RESIDUE CL A 2' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 22 HOH E . ? HOH A 7 . ? 1_555 ? 2 AC1 22 ARG A 19 ? ARG A 43 . ? 1_555 ? 3 AC1 22 LYS A 20 ? LYS A 44 . ? 1_555 ? 4 AC1 22 SER A 21 ? SER A 45 . ? 1_555 ? 5 AC1 22 ARG A 23 ? ARG A 47 . ? 1_555 ? 6 AC1 22 PRO A 46 ? PRO A 70 . ? 7_556 ? 7 AC1 22 SER A 47 ? SER A 71 . ? 7_556 ? 8 AC1 22 GLY A 48 ? GLY A 72 . ? 7_556 ? 9 AC1 22 ASP A 50 ? ASP A 74 . ? 7_556 ? 10 AC1 22 TYR A 74 ? TYR A 98 . ? 1_555 ? 11 AC1 22 MSE A 77 ? MSE A 101 . ? 1_555 ? 12 AC1 22 ASP A 100 ? ASP A 124 . ? 7_556 ? 13 AC1 22 VAL A 120 ? VAL A 144 . ? 1_555 ? 14 AC1 22 TRP A 121 ? TRP A 145 . ? 1_555 ? 15 AC1 22 THR A 122 ? THR A 146 . ? 1_555 ? 16 AC1 22 ALA A 123 ? ALA A 147 . ? 1_555 ? 17 AC1 22 ARG A 130 ? ARG A 154 . ? 1_555 ? 18 AC1 22 LYS A 162 ? LYS A 186 . ? 1_555 ? 19 AC1 22 LYS A 164 ? LYS A 188 . ? 1_555 ? 20 AC1 22 HOH E . ? HOH A 275 . ? 1_555 ? 21 AC1 22 HOH E . ? HOH A 293 . ? 1_555 ? 22 AC1 22 HOH E . ? HOH A 296 . ? 1_555 ? 23 AC2 4 GLN A 163 ? GLN A 187 . ? 1_555 ? 24 AC2 4 LYS A 164 ? LYS A 188 . ? 1_555 ? 25 AC2 4 TYR A 165 ? TYR A 189 . ? 1_555 ? 26 AC2 4 HOH E . ? HOH A 257 . ? 1_555 ? # _atom_sites.entry_id 3KWK _atom_sites.fract_transf_matrix[1][1] 0.023688 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023688 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005356 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 GLU 2 26 ? ? ? A . n A 1 3 LYS 3 27 ? ? ? A . n A 1 4 GLY 4 28 ? ? ? A . n A 1 5 THR 5 29 ? ? ? A . n A 1 6 THR 6 30 ? ? ? A . n A 1 7 GLY 7 31 ? ? ? A . n A 1 8 THR 8 32 32 THR THR A . n A 1 9 GLY 9 33 33 GLY GLY A . n A 1 10 ASN 10 34 34 ASN ASN A . n A 1 11 ALA 11 35 35 ALA ALA A . n A 1 12 ALA 12 36 36 ALA ALA A . n A 1 13 LEU 13 37 37 LEU LEU A . n A 1 14 ASP 14 38 38 ASP ASP A . n A 1 15 ASN 15 39 39 ASN ASN A . n A 1 16 ILE 16 40 40 ILE ILE A . n A 1 17 PHE 17 41 41 PHE PHE A . n A 1 18 GLU 18 42 42 GLU GLU A . n A 1 19 ARG 19 43 43 ARG ARG A . n A 1 20 LYS 20 44 44 LYS LYS A . n A 1 21 SER 21 45 45 SER SER A . n A 1 22 VAL 22 46 46 VAL VAL A . n A 1 23 ARG 23 47 47 ARG ARG A . n A 1 24 THR 24 48 48 THR THR A . n A 1 25 TYR 25 49 49 TYR TYR A . n A 1 26 LEU 26 50 50 LEU LEU A . n A 1 27 ASN 27 51 51 ASN ASN A . n A 1 28 LYS 28 52 52 LYS LYS A . n A 1 29 GLY 29 53 53 GLY GLY A . n A 1 30 VAL 30 54 54 VAL VAL A . n A 1 31 GLU 31 55 55 GLU GLU A . n A 1 32 LYS 32 56 56 LYS LYS A . n A 1 33 GLU 33 57 57 GLU GLU A . n A 1 34 LYS 34 58 58 LYS LYS A . n A 1 35 ILE 35 59 59 ILE ILE A . n A 1 36 ASP 36 60 60 ASP ASP A . n A 1 37 LEU 37 61 61 LEU LEU A . n A 1 38 MSE 38 62 62 MSE MSE A . n A 1 39 LEU 39 63 63 LEU LEU A . n A 1 40 ARG 40 64 64 ARG ARG A . n A 1 41 ALA 41 65 65 ALA ALA A . n A 1 42 GLY 42 66 66 GLY GLY A . n A 1 43 MSE 43 67 67 MSE MSE A . n A 1 44 SER 44 68 68 SER SER A . n A 1 45 ALA 45 69 69 ALA ALA A . n A 1 46 PRO 46 70 70 PRO PRO A . n A 1 47 SER 47 71 71 SER SER A . n A 1 48 GLY 48 72 72 GLY GLY A . n A 1 49 LYS 49 73 73 LYS LYS A . n A 1 50 ASP 50 74 74 ASP ASP A . n A 1 51 VAL 51 75 75 VAL VAL A . n A 1 52 ARG 52 76 76 ARG ARG A . n A 1 53 PRO 53 77 77 PRO PRO A . n A 1 54 TRP 54 78 78 TRP TRP A . n A 1 55 GLU 55 79 79 GLU GLU A . n A 1 56 PHE 56 80 80 PHE PHE A . n A 1 57 VAL 57 81 81 VAL VAL A . n A 1 58 VAL 58 82 82 VAL VAL A . n A 1 59 VAL 59 83 83 VAL VAL A . n A 1 60 SER 60 84 84 SER SER A . n A 1 61 ASP 61 85 85 ASP ASP A . n A 1 62 ARG 62 86 86 ARG ARG A . n A 1 63 ALA 63 87 87 ALA ALA A . n A 1 64 LYS 64 88 88 LYS LYS A . n A 1 65 LEU 65 89 89 LEU LEU A . n A 1 66 ASP 66 90 90 ASP ASP A . n A 1 67 SER 67 91 91 SER SER A . n A 1 68 MSE 68 92 92 MSE MSE A . n A 1 69 ALA 69 93 93 ALA ALA A . n A 1 70 ALA 70 94 94 ALA ALA A . n A 1 71 ALA 71 95 95 ALA ALA A . n A 1 72 LEU 72 96 96 LEU LEU A . n A 1 73 PRO 73 97 97 PRO PRO A . n A 1 74 TYR 74 98 98 TYR TYR A . n A 1 75 ALA 75 99 99 ALA ALA A . n A 1 76 LYS 76 100 100 LYS LYS A . n A 1 77 MSE 77 101 101 MSE MSE A . n A 1 78 LEU 78 102 102 LEU LEU A . n A 1 79 THR 79 103 103 THR THR A . n A 1 80 GLN 80 104 104 GLN GLN A . n A 1 81 ALA 81 105 105 ALA ALA A . n A 1 82 ARG 82 106 106 ARG ARG A . n A 1 83 ASN 83 107 107 ASN ASN A . n A 1 84 ALA 84 108 108 ALA ALA A . n A 1 85 ILE 85 109 109 ILE ILE A . n A 1 86 ILE 86 110 110 ILE ILE A . n A 1 87 VAL 87 111 111 VAL VAL A . n A 1 88 CYS 88 112 112 CYS CYS A . n A 1 89 GLY 89 113 113 GLY GLY A . n A 1 90 ASP 90 114 114 ASP ASP A . n A 1 91 SER 91 115 115 SER SER A . n A 1 92 ALA 92 116 116 ALA ALA A . n A 1 93 ARG 93 117 117 ARG ARG A . n A 1 94 SER 94 118 118 SER SER A . n A 1 95 PHE 95 119 119 PHE PHE A . n A 1 96 TYR 96 120 120 TYR TYR A . n A 1 97 TRP 97 121 121 TRP TRP A . n A 1 98 TYR 98 122 122 TYR TYR A . n A 1 99 LEU 99 123 123 LEU LEU A . n A 1 100 ASP 100 124 124 ASP ASP A . n A 1 101 CYS 101 125 125 CYS CYS A . n A 1 102 SER 102 126 126 SER SER A . n A 1 103 ALA 103 127 127 ALA ALA A . n A 1 104 ALA 104 128 128 ALA ALA A . n A 1 105 ALA 105 129 129 ALA ALA A . n A 1 106 GLN 106 130 130 GLN GLN A . n A 1 107 ASN 107 131 131 ASN ASN A . n A 1 108 ILE 108 132 132 ILE ILE A . n A 1 109 LEU 109 133 133 LEU LEU A . n A 1 110 LEU 110 134 134 LEU LEU A . n A 1 111 ALA 111 135 135 ALA ALA A . n A 1 112 ALA 112 136 136 ALA ALA A . n A 1 113 GLU 113 137 137 GLU GLU A . n A 1 114 SER 114 138 138 SER SER A . n A 1 115 MSE 115 139 139 MSE MSE A . n A 1 116 GLY 116 140 140 GLY GLY A . n A 1 117 LEU 117 141 141 LEU LEU A . n A 1 118 GLY 118 142 142 GLY GLY A . n A 1 119 ALA 119 143 143 ALA ALA A . n A 1 120 VAL 120 144 144 VAL VAL A . n A 1 121 TRP 121 145 145 TRP TRP A . n A 1 122 THR 122 146 146 THR THR A . n A 1 123 ALA 123 147 147 ALA ALA A . n A 1 124 ALA 124 148 148 ALA ALA A . n A 1 125 TYR 125 149 149 TYR TYR A . n A 1 126 PRO 126 150 150 PRO PRO A . n A 1 127 TYR 127 151 151 TYR TYR A . n A 1 128 GLU 128 152 152 GLU GLU A . n A 1 129 ASP 129 153 153 ASP ASP A . n A 1 130 ARG 130 154 154 ARG ARG A . n A 1 131 MSE 131 155 155 MSE MSE A . n A 1 132 GLU 132 156 156 GLU GLU A . n A 1 133 VAL 133 157 157 VAL VAL A . n A 1 134 VAL 134 158 158 VAL VAL A . n A 1 135 ARG 135 159 159 ARG ARG A . n A 1 136 LYS 136 160 160 LYS LYS A . n A 1 137 TYR 137 161 161 TYR TYR A . n A 1 138 THR 138 162 162 THR THR A . n A 1 139 HIS 139 163 163 HIS HIS A . n A 1 140 LEU 140 164 164 LEU LEU A . n A 1 141 PRO 141 165 165 PRO PRO A . n A 1 142 GLU 142 166 166 GLU GLU A . n A 1 143 ASN 143 167 167 ASN ASN A . n A 1 144 ILE 144 168 168 ILE ILE A . n A 1 145 LEU 145 169 169 LEU LEU A . n A 1 146 PRO 146 170 170 PRO PRO A . n A 1 147 LEU 147 171 171 LEU LEU A . n A 1 148 CYS 148 172 172 CYS CYS A . n A 1 149 VAL 149 173 173 VAL VAL A . n A 1 150 ILE 150 174 174 ILE ILE A . n A 1 151 PRO 151 175 175 PRO PRO A . n A 1 152 PHE 152 176 176 PHE PHE A . n A 1 153 GLY 153 177 177 GLY GLY A . n A 1 154 TYR 154 178 178 TYR TYR A . n A 1 155 PRO 155 179 179 PRO PRO A . n A 1 156 ALA 156 180 180 ALA ALA A . n A 1 157 THR 157 181 181 THR THR A . n A 1 158 LYS 158 182 182 LYS LYS A . n A 1 159 GLU 159 183 183 GLU GLU A . n A 1 160 GLN 160 184 184 GLN GLN A . n A 1 161 PRO 161 185 185 PRO PRO A . n A 1 162 LYS 162 186 186 LYS LYS A . n A 1 163 GLN 163 187 187 GLN GLN A . n A 1 164 LYS 164 188 188 LYS LYS A . n A 1 165 TYR 165 189 189 TYR TYR A . n A 1 166 ASP 166 190 190 ASP ASP A . n A 1 167 GLU 167 191 191 GLU GLU A . n A 1 168 LYS 168 192 192 LYS LYS A . n A 1 169 LYS 169 193 193 LYS LYS A . n A 1 170 ILE 170 194 194 ILE ILE A . n A 1 171 HIS 171 195 195 HIS HIS A . n A 1 172 TYR 172 196 196 TYR TYR A . n A 1 173 ASN 173 197 197 ASN ASN A . n A 1 174 GLN 174 198 198 GLN GLN A . n A 1 175 TYR 175 199 199 TYR TYR A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN 1 300 300 FMN FMN A . C 3 UNL 1 1 1 UNL UNL A . D 4 CL 1 2 2 CL CL A . E 5 HOH 1 3 3 HOH HOH A . E 5 HOH 2 4 4 HOH HOH A . E 5 HOH 3 5 5 HOH HOH A . E 5 HOH 4 6 6 HOH HOH A . E 5 HOH 5 7 7 HOH HOH A . E 5 HOH 6 8 8 HOH HOH A . E 5 HOH 7 9 9 HOH HOH A . E 5 HOH 8 10 10 HOH HOH A . E 5 HOH 9 11 11 HOH HOH A . E 5 HOH 10 12 12 HOH HOH A . E 5 HOH 11 13 13 HOH HOH A . E 5 HOH 12 14 14 HOH HOH A . E 5 HOH 13 15 15 HOH HOH A . E 5 HOH 14 16 16 HOH HOH A . E 5 HOH 15 17 17 HOH HOH A . E 5 HOH 16 18 18 HOH HOH A . E 5 HOH 17 19 19 HOH HOH A . E 5 HOH 18 20 20 HOH HOH A . E 5 HOH 19 21 21 HOH HOH A . E 5 HOH 20 22 22 HOH HOH A . E 5 HOH 21 23 23 HOH HOH A . E 5 HOH 22 24 24 HOH HOH A . E 5 HOH 23 200 200 HOH HOH A . E 5 HOH 24 201 201 HOH HOH A . E 5 HOH 25 202 202 HOH HOH A . E 5 HOH 26 203 203 HOH HOH A . E 5 HOH 27 204 204 HOH HOH A . E 5 HOH 28 205 205 HOH HOH A . E 5 HOH 29 206 206 HOH HOH A . E 5 HOH 30 207 207 HOH HOH A . E 5 HOH 31 208 208 HOH HOH A . E 5 HOH 32 209 209 HOH HOH A . E 5 HOH 33 210 210 HOH HOH A . E 5 HOH 34 211 211 HOH HOH A . E 5 HOH 35 212 212 HOH HOH A . E 5 HOH 36 213 213 HOH HOH A . E 5 HOH 37 214 214 HOH HOH A . E 5 HOH 38 215 215 HOH HOH A . E 5 HOH 39 216 216 HOH HOH A . E 5 HOH 40 217 217 HOH HOH A . E 5 HOH 41 218 218 HOH HOH A . E 5 HOH 42 219 219 HOH HOH A . E 5 HOH 43 220 220 HOH HOH A . E 5 HOH 44 221 221 HOH HOH A . E 5 HOH 45 222 222 HOH HOH A . E 5 HOH 46 223 223 HOH HOH A . E 5 HOH 47 224 224 HOH HOH A . E 5 HOH 48 225 225 HOH HOH A . E 5 HOH 49 226 226 HOH HOH A . E 5 HOH 50 227 227 HOH HOH A . E 5 HOH 51 228 228 HOH HOH A . E 5 HOH 52 229 229 HOH HOH A . E 5 HOH 53 230 230 HOH HOH A . E 5 HOH 54 231 231 HOH HOH A . E 5 HOH 55 232 232 HOH HOH A . E 5 HOH 56 233 233 HOH HOH A . E 5 HOH 57 234 234 HOH HOH A . E 5 HOH 58 235 235 HOH HOH A . E 5 HOH 59 236 236 HOH HOH A . E 5 HOH 60 237 237 HOH HOH A . E 5 HOH 61 238 238 HOH HOH A . E 5 HOH 62 239 239 HOH HOH A . E 5 HOH 63 240 240 HOH HOH A . E 5 HOH 64 241 241 HOH HOH A . E 5 HOH 65 242 242 HOH HOH A . E 5 HOH 66 243 243 HOH HOH A . E 5 HOH 67 244 244 HOH HOH A . E 5 HOH 68 245 245 HOH HOH A . E 5 HOH 69 246 246 HOH HOH A . E 5 HOH 70 247 247 HOH HOH A . E 5 HOH 71 248 248 HOH HOH A . E 5 HOH 72 249 249 HOH HOH A . E 5 HOH 73 250 250 HOH HOH A . E 5 HOH 74 251 251 HOH HOH A . E 5 HOH 75 252 252 HOH HOH A . E 5 HOH 76 253 253 HOH HOH A . E 5 HOH 77 254 254 HOH HOH A . E 5 HOH 78 255 255 HOH HOH A . E 5 HOH 79 256 256 HOH HOH A . E 5 HOH 80 257 257 HOH HOH A . E 5 HOH 81 258 258 HOH HOH A . E 5 HOH 82 259 259 HOH HOH A . E 5 HOH 83 260 260 HOH HOH A . E 5 HOH 84 261 261 HOH HOH A . E 5 HOH 85 262 262 HOH HOH A . E 5 HOH 86 263 263 HOH HOH A . E 5 HOH 87 264 264 HOH HOH A . E 5 HOH 88 265 265 HOH HOH A . E 5 HOH 89 266 266 HOH HOH A . E 5 HOH 90 267 267 HOH HOH A . E 5 HOH 91 268 268 HOH HOH A . E 5 HOH 92 269 269 HOH HOH A . E 5 HOH 93 270 270 HOH HOH A . E 5 HOH 94 271 271 HOH HOH A . E 5 HOH 95 272 25 HOH HOH A . E 5 HOH 96 273 26 HOH HOH A . E 5 HOH 97 274 27 HOH HOH A . E 5 HOH 98 275 28 HOH HOH A . E 5 HOH 99 276 29 HOH HOH A . E 5 HOH 100 277 30 HOH HOH A . E 5 HOH 101 278 31 HOH HOH A . E 5 HOH 102 279 32 HOH HOH A . E 5 HOH 103 280 33 HOH HOH A . E 5 HOH 104 281 34 HOH HOH A . E 5 HOH 105 282 35 HOH HOH A . E 5 HOH 106 283 36 HOH HOH A . E 5 HOH 107 284 37 HOH HOH A . E 5 HOH 108 285 38 HOH HOH A . E 5 HOH 109 286 39 HOH HOH A . E 5 HOH 110 287 40 HOH HOH A . E 5 HOH 111 288 41 HOH HOH A . E 5 HOH 112 289 42 HOH HOH A . E 5 HOH 113 290 43 HOH HOH A . E 5 HOH 114 291 44 HOH HOH A . E 5 HOH 115 292 45 HOH HOH A . E 5 HOH 116 293 46 HOH HOH A . E 5 HOH 117 294 47 HOH HOH A . E 5 HOH 118 295 48 HOH HOH A . E 5 HOH 119 296 49 HOH HOH A . E 5 HOH 120 297 50 HOH HOH A . E 5 HOH 121 298 51 HOH HOH A . E 5 HOH 122 299 52 HOH HOH A . E 5 HOH 123 301 53 HOH HOH A . E 5 HOH 124 302 54 HOH HOH A . E 5 HOH 125 303 55 HOH HOH A . E 5 HOH 126 304 56 HOH HOH A . E 5 HOH 127 305 57 HOH HOH A . E 5 HOH 128 306 58 HOH HOH A . E 5 HOH 129 307 59 HOH HOH A . E 5 HOH 130 308 60 HOH HOH A . E 5 HOH 131 309 61 HOH HOH A . E 5 HOH 132 310 62 HOH HOH A . E 5 HOH 133 311 63 HOH HOH A . E 5 HOH 134 312 64 HOH HOH A . E 5 HOH 135 313 65 HOH HOH A . E 5 HOH 136 314 66 HOH HOH A . E 5 HOH 137 315 67 HOH HOH A . E 5 HOH 138 316 68 HOH HOH A . E 5 HOH 139 317 69 HOH HOH A . E 5 HOH 140 318 70 HOH HOH A . E 5 HOH 141 319 71 HOH HOH A . E 5 HOH 142 320 72 HOH HOH A . E 5 HOH 143 321 73 HOH HOH A . E 5 HOH 144 322 74 HOH HOH A . E 5 HOH 145 323 75 HOH HOH A . E 5 HOH 146 324 76 HOH HOH A . E 5 HOH 147 325 77 HOH HOH A . E 5 HOH 148 326 78 HOH HOH A . E 5 HOH 149 327 79 HOH HOH A . E 5 HOH 150 328 80 HOH HOH A . E 5 HOH 151 329 81 HOH HOH A . E 5 HOH 152 330 82 HOH HOH A . E 5 HOH 153 331 83 HOH HOH A . E 5 HOH 154 332 84 HOH HOH A . E 5 HOH 155 333 85 HOH HOH A . E 5 HOH 156 334 86 HOH HOH A . E 5 HOH 157 335 87 HOH HOH A . E 5 HOH 158 336 88 HOH HOH A . E 5 HOH 159 337 89 HOH HOH A . E 5 HOH 160 338 90 HOH HOH A . E 5 HOH 161 339 91 HOH HOH A . E 5 HOH 162 340 92 HOH HOH A . E 5 HOH 163 341 93 HOH HOH A . E 5 HOH 164 342 94 HOH HOH A . E 5 HOH 165 343 95 HOH HOH A . E 5 HOH 166 344 96 HOH HOH A . E 5 HOH 167 345 97 HOH HOH A . E 5 HOH 168 346 98 HOH HOH A . E 5 HOH 169 347 99 HOH HOH A . E 5 HOH 170 348 100 HOH HOH A . E 5 HOH 171 349 101 HOH HOH A . E 5 HOH 172 350 102 HOH HOH A . E 5 HOH 173 351 103 HOH HOH A . E 5 HOH 174 352 104 HOH HOH A . E 5 HOH 175 353 105 HOH HOH A . E 5 HOH 176 354 106 HOH HOH A . E 5 HOH 177 355 107 HOH HOH A . E 5 HOH 178 356 108 HOH HOH A . E 5 HOH 179 357 109 HOH HOH A . E 5 HOH 180 358 110 HOH HOH A . E 5 HOH 181 359 111 HOH HOH A . E 5 HOH 182 360 112 HOH HOH A . E 5 HOH 183 361 113 HOH HOH A . E 5 HOH 184 362 114 HOH HOH A . E 5 HOH 185 363 115 HOH HOH A . E 5 HOH 186 364 116 HOH HOH A . E 5 HOH 187 365 117 HOH HOH A . E 5 HOH 188 366 118 HOH HOH A . E 5 HOH 189 367 119 HOH HOH A . E 5 HOH 190 368 120 HOH HOH A . E 5 HOH 191 369 121 HOH HOH A . E 5 HOH 192 370 122 HOH HOH A . E 5 HOH 193 371 123 HOH HOH A . E 5 HOH 194 372 124 HOH HOH A . E 5 HOH 195 373 125 HOH HOH A . E 5 HOH 196 374 126 HOH HOH A . E 5 HOH 197 375 127 HOH HOH A . E 5 HOH 198 376 128 HOH HOH A . E 5 HOH 199 377 129 HOH HOH A . E 5 HOH 200 378 130 HOH HOH A . E 5 HOH 201 379 131 HOH HOH A . E 5 HOH 202 380 132 HOH HOH A . E 5 HOH 203 381 133 HOH HOH A . E 5 HOH 204 382 134 HOH HOH A . E 5 HOH 205 383 135 HOH HOH A . E 5 HOH 206 384 136 HOH HOH A . E 5 HOH 207 385 137 HOH HOH A . E 5 HOH 208 386 138 HOH HOH A . E 5 HOH 209 387 139 HOH HOH A . E 5 HOH 210 388 140 HOH HOH A . E 5 HOH 211 389 141 HOH HOH A . E 5 HOH 212 390 142 HOH HOH A . E 5 HOH 213 391 143 HOH HOH A . E 5 HOH 214 392 144 HOH HOH A . E 5 HOH 215 393 145 HOH HOH A . E 5 HOH 216 394 146 HOH HOH A . E 5 HOH 217 395 147 HOH HOH A . E 5 HOH 218 396 148 HOH HOH A . E 5 HOH 219 397 149 HOH HOH A . E 5 HOH 220 398 150 HOH HOH A . E 5 HOH 221 399 151 HOH HOH A . E 5 HOH 222 400 152 HOH HOH A . E 5 HOH 223 401 153 HOH HOH A . E 5 HOH 224 402 154 HOH HOH A . E 5 HOH 225 403 155 HOH HOH A . E 5 HOH 226 404 156 HOH HOH A . E 5 HOH 227 405 157 HOH HOH A . E 5 HOH 228 406 158 HOH HOH A . E 5 HOH 229 407 159 HOH HOH A . E 5 HOH 230 408 160 HOH HOH A . E 5 HOH 231 409 161 HOH HOH A . E 5 HOH 232 410 162 HOH HOH A . E 5 HOH 233 411 163 HOH HOH A . E 5 HOH 234 412 164 HOH HOH A . E 5 HOH 235 413 165 HOH HOH A . E 5 HOH 236 414 166 HOH HOH A . E 5 HOH 237 415 167 HOH HOH A . E 5 HOH 238 416 168 HOH HOH A . E 5 HOH 239 417 169 HOH HOH A . E 5 HOH 240 418 170 HOH HOH A . E 5 HOH 241 419 171 HOH HOH A . E 5 HOH 242 420 172 HOH HOH A . E 5 HOH 243 421 173 HOH HOH A . E 5 HOH 244 422 174 HOH HOH A . E 5 HOH 245 423 175 HOH HOH A . E 5 HOH 246 424 176 HOH HOH A . E 5 HOH 247 425 177 HOH HOH A . E 5 HOH 248 426 178 HOH HOH A . E 5 HOH 249 427 179 HOH HOH A . E 5 HOH 250 428 180 HOH HOH A . E 5 HOH 251 429 181 HOH HOH A . E 5 HOH 252 430 182 HOH HOH A . E 5 HOH 253 431 183 HOH HOH A . E 5 HOH 254 432 184 HOH HOH A . E 5 HOH 255 433 185 HOH HOH A . E 5 HOH 256 434 186 HOH HOH A . E 5 HOH 257 435 187 HOH HOH A . E 5 HOH 258 436 188 HOH HOH A . E 5 HOH 259 437 189 HOH HOH A . E 5 HOH 260 438 190 HOH HOH A . E 5 HOH 261 439 191 HOH HOH A . E 5 HOH 262 440 192 HOH HOH A . E 5 HOH 263 441 193 HOH HOH A . E 5 HOH 264 442 194 HOH HOH A . E 5 HOH 265 443 195 HOH HOH A . E 5 HOH 266 444 196 HOH HOH A . E 5 HOH 267 445 197 HOH HOH A . E 5 HOH 268 446 198 HOH HOH A . E 5 HOH 269 447 199 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 38 A MSE 62 ? MET SELENOMETHIONINE 2 A MSE 43 A MSE 67 ? MET SELENOMETHIONINE 3 A MSE 68 A MSE 92 ? MET SELENOMETHIONINE 4 A MSE 77 A MSE 101 ? MET SELENOMETHIONINE 5 A MSE 115 A MSE 139 ? MET SELENOMETHIONINE 6 A MSE 131 A MSE 155 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 9080 ? 1 MORE -66 ? 1 'SSA (A^2)' 12540 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_556 y,x,-z+1 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 186.7130000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-12-15 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-17 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Author supporting evidence' 4 3 'Structure model' 'Refinement description' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_struct_assembly_auth_evidence 2 3 'Structure model' software 3 4 'Structure model' software 4 4 'Structure model' struct_conn 5 5 'Structure model' database_2 6 5 'Structure model' struct_ref_seq_dif 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 17.4788 _pdbx_refine_tls.origin_y 9.9865 _pdbx_refine_tls.origin_z 85.5659 _pdbx_refine_tls.T[1][1] 0.0111 _pdbx_refine_tls.T[2][2] 0.0039 _pdbx_refine_tls.T[3][3] 0.0110 _pdbx_refine_tls.T[1][2] 0.0017 _pdbx_refine_tls.T[1][3] -0.0017 _pdbx_refine_tls.T[2][3] -0.0020 _pdbx_refine_tls.L[1][1] 0.3309 _pdbx_refine_tls.L[2][2] 0.3594 _pdbx_refine_tls.L[3][3] 0.5437 _pdbx_refine_tls.L[1][2] -0.0251 _pdbx_refine_tls.L[1][3] -0.1206 _pdbx_refine_tls.L[2][3] 0.0977 _pdbx_refine_tls.S[1][1] 0.0011 _pdbx_refine_tls.S[2][2] 0.0117 _pdbx_refine_tls.S[3][3] -0.0128 _pdbx_refine_tls.S[1][2] 0.0258 _pdbx_refine_tls.S[1][3] -0.0010 _pdbx_refine_tls.S[2][3] -0.0348 _pdbx_refine_tls.S[2][1] -0.0223 _pdbx_refine_tls.S[3][1] 0.0275 _pdbx_refine_tls.S[3][2] -0.0125 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 32 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 199 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # _phasing.method SAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.5.0072 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 SCALA 3.2.5 5/04/2004 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 7 SHELXD . ? ? ? ? phasing ? ? ? 8 autoSHARP . ? ? ? ? phasing ? ? ? 9 # _pdbx_entry_details.entry_id 3KWK _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;SEQUENCE: THE CONSTRUCT (RESIDUES 26-199) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 NZ _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 LYS _pdbx_validate_close_contact.auth_seq_id_1 193 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 B _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 259 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.19 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 47 ? ? CZ A ARG 47 ? ? NH1 A ARG 47 ? ? 123.79 120.30 3.49 0.50 N 2 1 NE A ARG 117 ? A CZ A ARG 117 ? A NH2 A ARG 117 ? A 116.46 120.30 -3.84 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 73 ? A 55.86 19.87 2 1 LYS A 73 ? B 57.83 18.98 3 1 ALA A 148 ? ? -103.53 -84.15 4 1 ASN A 197 ? ? 71.47 -40.83 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A GLU 26 ? A GLU 2 3 1 Y 1 A LYS 27 ? A LYS 3 4 1 Y 1 A GLY 28 ? A GLY 4 5 1 Y 1 A THR 29 ? A THR 5 6 1 Y 1 A THR 30 ? A THR 6 7 1 Y 1 A GLY 31 ? A GLY 7 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'FLAVIN MONONUCLEOTIDE' FMN 3 'UNKNOWN LIGAND' UNL 4 'CHLORIDE ION' CL 5 water HOH # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'gel filtration' ? 2 1 'light scattering' ? #