HEADER TRANSFERASE 01-DEC-09 3KWP TITLE CRYSTAL STRUCTURE OF PUTATIVE METHYLTRANSFERASE FROM LACTOBACILLUS TITLE 2 BREVIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PREDICTED METHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS BREVIS ATCC 367; SOURCE 3 ORGANISM_TAXID: 387344; SOURCE 4 STRAIN: ATCC 367 / JCM 1170; SOURCE 5 GENE: LVIS_0608; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)DERIVATIVE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET DERIVATIVE KEYWDS PUTATIVE METHYLTRANSFERASE, LACTOBACILLUS BREVIS, MCSG, STRUCTURAL KEYWDS 2 GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, METHYLTRANSFERASE, S-ADENOSYL-L-METHIONINE, KEYWDS 4 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,X.XU,H.CUI,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK,MIDWEST CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS (MCSG) REVDAT 3 01-NOV-17 3KWP 1 REMARK REVDAT 2 13-JUL-11 3KWP 1 VERSN REVDAT 1 15-DEC-09 3KWP 0 JRNL AUTH C.CHANG,X.XU,H.CUI,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE METHYLTRANSFERASE FROM JRNL TITL 2 LACTOBACILLUS BREVIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 12577 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 614 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.29 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.35 REMARK 3 REFLECTION IN BIN (WORKING SET) : 767 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE SET COUNT : 43 REMARK 3 BIN FREE R VALUE : 0.2100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1740 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 80 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 39.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.23000 REMARK 3 B22 (A**2) : -5.29000 REMARK 3 B33 (A**2) : 7.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.324 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.266 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.227 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.728 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1807 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2462 ; 1.606 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 231 ; 6.437 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 80 ;38.889 ;24.125 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 288 ;17.134 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;20.398 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 280 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1386 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1153 ; 0.735 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1853 ; 1.313 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 654 ; 2.257 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 609 ; 3.535 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 124 REMARK 3 ORIGIN FOR THE GROUP (A): -15.2732 38.5098 32.4615 REMARK 3 T TENSOR REMARK 3 T11: 0.0793 T22: 0.0681 REMARK 3 T33: 0.1899 T12: -0.0087 REMARK 3 T13: 0.0269 T23: 0.0193 REMARK 3 L TENSOR REMARK 3 L11: 3.0507 L22: 3.4844 REMARK 3 L33: 1.7978 L12: -0.8639 REMARK 3 L13: 0.6663 L23: -1.2512 REMARK 3 S TENSOR REMARK 3 S11: 0.0141 S12: -0.1500 S13: -0.2510 REMARK 3 S21: 0.1288 S22: 0.1530 S23: 0.6080 REMARK 3 S31: 0.0334 S32: 0.0709 S33: -0.1671 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 125 A 290 REMARK 3 ORIGIN FOR THE GROUP (A): 3.5799 25.8484 14.4111 REMARK 3 T TENSOR REMARK 3 T11: 0.2324 T22: 0.1843 REMARK 3 T33: 0.0945 T12: -0.0018 REMARK 3 T13: 0.0204 T23: -0.0470 REMARK 3 L TENSOR REMARK 3 L11: 3.6460 L22: 5.6990 REMARK 3 L33: 1.8828 L12: -1.0029 REMARK 3 L13: 0.4603 L23: 0.9426 REMARK 3 S TENSOR REMARK 3 S11: 0.0535 S12: 0.4193 S13: -0.5079 REMARK 3 S21: -0.6116 S22: -0.0460 S23: 0.3447 REMARK 3 S31: -0.0313 S32: 0.1386 S33: -0.0075 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3KWP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-DEC-09. REMARK 100 THE DEPOSITION ID IS D_1000056541. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-09; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; NULL REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; APS REMARK 200 BEAMLINE : 19-BM; 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.97942; 0.97972 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; NULL REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12839 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.290 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.48700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.360 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXD, MLPHARE, DM, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5, 0.2M MGCL2, 25% REMARK 280 PEG3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 32.13750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.60300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.13750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.60300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DIMER WITH VECTOR (X,Y,Z) AND (-X,-Y+1,Z) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 79.20600 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 GLU A 2 REMARK 465 GLN A 3 REMARK 465 GLN A 4 REMARK 465 ARG A 5 REMARK 465 SER A 6 REMARK 465 PHE A 7 REMARK 465 GLN A 8 REMARK 465 THR A 9 REMARK 465 GLU A 10 REMARK 465 THR A 239 REMARK 465 ALA A 240 REMARK 465 ALA A 241 REMARK 465 THR A 242 REMARK 465 THR A 243 REMARK 465 ALA A 244 REMARK 465 VAL A 245 REMARK 465 ASP A 246 REMARK 465 LEU A 247 REMARK 465 SER A 248 REMARK 465 GLU A 249 REMARK 465 PRO A 250 REMARK 465 ILE A 251 REMARK 465 ASP A 252 REMARK 465 VAL A 253 REMARK 465 GLN A 254 REMARK 465 VAL A 255 REMARK 465 ASP A 256 REMARK 465 ARG A 257 REMARK 465 LEU A 258 REMARK 465 ILE A 259 REMARK 465 ALA A 260 REMARK 465 ALA A 261 REMARK 465 GLY A 262 REMARK 465 GLU A 263 REMARK 465 LYS A 264 REMARK 465 PRO A 265 REMARK 465 ASN A 266 REMARK 465 ASP A 267 REMARK 465 ALA A 268 REMARK 465 ILE A 269 REMARK 465 LYS A 270 REMARK 465 GLU A 271 REMARK 465 VAL A 272 REMARK 465 ALA A 273 REMARK 465 LYS A 274 REMARK 465 LEU A 275 REMARK 465 ARG A 276 REMARK 465 GLY A 277 REMARK 465 ALA A 278 REMARK 465 LYS A 279 REMARK 465 LYS A 280 REMARK 465 GLN A 281 REMARK 465 GLU A 282 REMARK 465 ILE A 283 REMARK 465 TYR A 284 REMARK 465 ARG A 285 REMARK 465 GLN A 286 REMARK 465 TYR A 287 REMARK 465 HIS A 288 REMARK 465 HIS A 289 REMARK 465 LEU A 290 REMARK 465 ASP A 291 REMARK 465 GLU A 292 REMARK 465 GLU A 293 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 148 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 149 CG CD CE NZ REMARK 470 PRO A 150 CG CD REMARK 470 LYS A 151 CG CD CE NZ REMARK 470 THR A 238 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 346 O HOH A 356 4556 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 31 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 31 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 200 0.57 81.09 REMARK 500 THR A 222 104.98 -42.28 REMARK 500 ALA A 236 75.85 -156.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC64793 RELATED DB: TARGETDB DBREF 3KWP A 1 293 UNP Q03SR9 Q03SR9_LACBA 1 293 SEQADV 3KWP GLN A -2 UNP Q03SR9 EXPRESSION TAG SEQADV 3KWP GLY A -1 UNP Q03SR9 EXPRESSION TAG SEQADV 3KWP HIS A 0 UNP Q03SR9 EXPRESSION TAG SEQRES 1 A 296 GLN GLY HIS MSE GLU GLN GLN ARG SER PHE GLN THR GLU SEQRES 2 A 296 THR GLY GLY HIS LEU TYR LEU VAL PRO THR PRO ILE GLY SEQRES 3 A 296 ASN LEU ASP ASP MSE THR PHE ARG ALA VAL LYS THR LEU SEQRES 4 A 296 THR ALA VAL ASP LEU ILE ALA ALA GLU ASP THR ARG ASN SEQRES 5 A 296 THR GLN LYS LEU LEU ASN HIS PHE GLU ILE THR THR LYS SEQRES 6 A 296 GLN ILE SER PHE HIS GLU HIS ASN THR GLN GLU ARG ILE SEQRES 7 A 296 PRO GLN LEU ILE ALA LYS LEU LYS GLN GLY MSE GLN ILE SEQRES 8 A 296 ALA GLN VAL SER ASP ALA GLY MSE PRO SER ILE SER ASP SEQRES 9 A 296 PRO GLY HIS GLU LEU VAL ASN ALA CYS ILE ASP ALA HIS SEQRES 10 A 296 ILE PRO VAL VAL PRO LEU PRO GLY ALA ASN ALA GLY LEU SEQRES 11 A 296 THR ALA LEU ILE ALA SER GLY LEU ALA PRO GLN PRO PHE SEQRES 12 A 296 TYR PHE TYR GLY PHE LEU ASP ARG LYS PRO LYS ASP ARG SEQRES 13 A 296 LYS ALA GLU ILE ALA GLY LEU ALA GLN ARG PRO GLU THR SEQRES 14 A 296 LEU ILE PHE TYR GLU ALA PRO HIS ARG LEU LYS LYS THR SEQRES 15 A 296 LEU GLN ASN LEU ALA ALA GLY PHE GLY ASP GLU ARG PRO SEQRES 16 A 296 ALA VAL LEU CYS ARG GLU LEU THR LYS ARG TYR GLU GLU SEQRES 17 A 296 PHE LEU ARG GLY SER LEU ALA GLU LEU ALA ASN TRP ALA SEQRES 18 A 296 ALA THR ASP THR VAL ARG GLY GLU PHE VAL VAL LEU VAL SEQRES 19 A 296 GLY GLY ASN PRO ALA PRO THR THR ALA ALA THR THR ALA SEQRES 20 A 296 VAL ASP LEU SER GLU PRO ILE ASP VAL GLN VAL ASP ARG SEQRES 21 A 296 LEU ILE ALA ALA GLY GLU LYS PRO ASN ASP ALA ILE LYS SEQRES 22 A 296 GLU VAL ALA LYS LEU ARG GLY ALA LYS LYS GLN GLU ILE SEQRES 23 A 296 TYR ARG GLN TYR HIS HIS LEU ASP GLU GLU MODRES 3KWP MSE A 28 MET SELENOMETHIONINE MODRES 3KWP MSE A 86 MET SELENOMETHIONINE MODRES 3KWP MSE A 96 MET SELENOMETHIONINE HET MSE A 28 8 HET MSE A 86 8 HET MSE A 96 8 HET TRS A 301 8 HETNAM MSE SELENOMETHIONINE HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TRS TRIS BUFFER FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 TRS C4 H12 N O3 1+ FORMUL 3 HOH *80(H2 O) HELIX 1 1 ASN A 24 MSE A 28 5 5 HELIX 2 2 THR A 29 VAL A 39 1 11 HELIX 3 3 ASP A 46 PHE A 57 1 12 HELIX 4 4 ASN A 70 GLN A 84 1 15 HELIX 5 5 SER A 100 ALA A 113 1 14 HELIX 6 6 ASN A 124 GLY A 134 1 11 HELIX 7 7 LYS A 149 GLY A 159 1 11 HELIX 8 8 ALA A 172 HIS A 174 5 3 HELIX 9 9 ARG A 175 GLY A 188 1 14 HELIX 10 10 LEU A 211 ASP A 221 1 11 SHEET 1 A 5 LYS A 62 SER A 65 0 SHEET 2 A 5 LEU A 41 ALA A 44 1 N ILE A 42 O ILE A 64 SHEET 3 A 5 GLN A 87 VAL A 91 1 O ALA A 89 N ALA A 43 SHEET 4 A 5 HIS A 14 LEU A 17 1 N TYR A 16 O ILE A 88 SHEET 5 A 5 VAL A 117 PRO A 119 1 O VAL A 118 N LEU A 15 SHEET 1 B 5 PHE A 140 PHE A 145 0 SHEET 2 B 5 THR A 166 GLU A 171 1 O ILE A 168 N TYR A 143 SHEET 3 B 5 PHE A 227 VAL A 231 -1 O VAL A 229 N PHE A 169 SHEET 4 B 5 PRO A 192 ARG A 197 -1 N VAL A 194 O LEU A 230 SHEET 5 B 5 GLU A 205 SER A 210 -1 O GLU A 205 N ARG A 197 LINK C MSE A 28 N THR A 29 1555 1555 1.34 LINK C MSE A 86 N GLN A 87 1555 1555 1.33 LINK C MSE A 96 N PRO A 97 1555 1555 1.36 CISPEP 1 GLN A 138 PRO A 139 0 -8.96 SITE 1 AC1 5 GLN A 181 ALA A 185 ASP A 189 HOH A 347 SITE 2 AC1 5 HOH A 362 CRYST1 64.275 79.206 54.132 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015558 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012625 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018473 0.00000