data_3KWR # _entry.id 3KWR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3KWR pdb_00003kwr 10.2210/pdb3kwr/pdb RCSB RCSB056543 ? ? WWPDB D_1000056543 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 392319 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3KWR _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-12-01 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of Putative RNA-binding protein (NP_785364.1) from Lactobacillus plantarum at 1.45 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3KWR _cell.length_a 104.869 _cell.length_b 104.869 _cell.length_c 35.979 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3KWR _symmetry.Int_Tables_number 171 _symmetry.space_group_name_H-M 'P 62' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative RNA-binding protein' 10811.473 2 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 4 water nat water 18.015 218 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)NHNYVEVKYPAIFRDEGTYWDVRFPDVPAAQTFGASVQVAADNAANALAIALFEQSLPPASDPQYWRLASTEFV VWIT(MSE)ADVQFGPGADTPEP(MSE)N ; _entity_poly.pdbx_seq_one_letter_code_can ;GMNHNYVEVKYPAIFRDEGTYWDVRFPDVPAAQTFGASVQVAADNAANALAIALFEQSLPPASDPQYWRLASTEFVVWIT MADVQFGPGADTPEPMN ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier 392319 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 ASN n 1 4 HIS n 1 5 ASN n 1 6 TYR n 1 7 VAL n 1 8 GLU n 1 9 VAL n 1 10 LYS n 1 11 TYR n 1 12 PRO n 1 13 ALA n 1 14 ILE n 1 15 PHE n 1 16 ARG n 1 17 ASP n 1 18 GLU n 1 19 GLY n 1 20 THR n 1 21 TYR n 1 22 TRP n 1 23 ASP n 1 24 VAL n 1 25 ARG n 1 26 PHE n 1 27 PRO n 1 28 ASP n 1 29 VAL n 1 30 PRO n 1 31 ALA n 1 32 ALA n 1 33 GLN n 1 34 THR n 1 35 PHE n 1 36 GLY n 1 37 ALA n 1 38 SER n 1 39 VAL n 1 40 GLN n 1 41 VAL n 1 42 ALA n 1 43 ALA n 1 44 ASP n 1 45 ASN n 1 46 ALA n 1 47 ALA n 1 48 ASN n 1 49 ALA n 1 50 LEU n 1 51 ALA n 1 52 ILE n 1 53 ALA n 1 54 LEU n 1 55 PHE n 1 56 GLU n 1 57 GLN n 1 58 SER n 1 59 LEU n 1 60 PRO n 1 61 PRO n 1 62 ALA n 1 63 SER n 1 64 ASP n 1 65 PRO n 1 66 GLN n 1 67 TYR n 1 68 TRP n 1 69 ARG n 1 70 LEU n 1 71 ALA n 1 72 SER n 1 73 THR n 1 74 GLU n 1 75 PHE n 1 76 VAL n 1 77 VAL n 1 78 TRP n 1 79 ILE n 1 80 THR n 1 81 MSE n 1 82 ALA n 1 83 ASP n 1 84 VAL n 1 85 GLN n 1 86 PHE n 1 87 GLY n 1 88 PRO n 1 89 GLY n 1 90 ALA n 1 91 ASP n 1 92 THR n 1 93 PRO n 1 94 GLU n 1 95 PRO n 1 96 MSE n 1 97 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene lp_1800 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Lactobacillus plantarum' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1590 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q88W58_LACPL _struct_ref.pdbx_db_accession Q88W58 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MNHNYVEVKYPAIFRDEGTYWDVRFPDVPAAQTFGASVQVAADNAANALAIALFEQSLPPASDPQYWRLASTEFVVWITM ADVQFGPGADTPEPMN ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3KWR A 2 ? 97 ? Q88W58 1 ? 96 ? 1 96 2 1 3KWR B 2 ? 97 ? Q88W58 1 ? 96 ? 1 96 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3KWR GLY A 1 ? UNP Q88W58 ? ? 'expression tag' 0 1 2 3KWR GLY B 1 ? UNP Q88W58 ? ? 'expression tag' 0 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3KWR # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.64 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 53.43 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 9.0 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '0.8000M (NH4)2SO4, 0.1M Bicine pH 9.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat collimating mirror, toroid focusing mirror' _diffrn_detector.pdbx_collection_date 2009-07-30 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97911 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength 0.97911 _diffrn_source.pdbx_wavelength_list ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3KWR _reflns.d_resolution_high 1.45 _reflns.d_resolution_low 29.670 _reflns.number_obs 40229 _reflns.pdbx_Rmerge_I_obs 0.041 _reflns.pdbx_netI_over_sigmaI 16.580 _reflns.percent_possible_obs 97.000 _reflns.B_iso_Wilson_estimate 16.746 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.45 1.50 15319 ? 6918 0.592 1.6 ? ? ? ? ? 90.30 1 1 1.50 1.56 18639 ? 7539 0.417 2.5 ? ? ? ? ? 96.30 2 1 1.56 1.63 19394 ? 7550 0.336 3.1 ? ? ? ? ? 96.70 3 1 1.63 1.72 21155 ? 7968 0.220 4.8 ? ? ? ? ? 97.20 4 1 1.72 1.83 21186 ? 7746 0.140 7.6 ? ? ? ? ? 97.40 5 1 1.83 1.97 21255 ? 7541 0.091 11.6 ? ? ? ? ? 97.30 6 1 1.97 2.17 22190 ? 7751 0.058 17.5 ? ? ? ? ? 98.00 7 1 2.17 2.48 31341 ? 7582 0.058 24.9 ? ? ? ? ? 98.40 8 1 2.48 3.12 43910 ? 7728 0.044 36.0 ? ? ? ? ? 99.00 9 1 3.12 ? 45405 ? 7844 0.025 53.8 ? ? ? ? ? 99.10 10 1 # _refine.entry_id 3KWR _refine.ls_d_res_high 1.450 _refine.ls_d_res_low 29.670 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.670 _refine.ls_number_reflns_obs 40213 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1.HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2.ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. 3.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4.SULPHATE ANION (SO4) FROM CRYSTALLIZATION AND GLYCEROL MOLECULE (GOL) FROM CRYOPROTECTANT ARE MODELED IN THE STRUCTURE. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.164 _refine.ls_R_factor_R_work 0.163 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.181 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 2017 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 14.125 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.350 _refine.aniso_B[2][2] -0.350 _refine.aniso_B[3][3] 0.530 _refine.aniso_B[1][2] -0.180 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.967 _refine.correlation_coeff_Fo_to_Fc_free 0.961 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.054 _refine.pdbx_overall_ESU_R_Free 0.055 _refine.overall_SU_ML 0.033 _refine.overall_SU_B 1.892 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 53.51 _refine.B_iso_min 4.45 _refine.occupancy_max 1.00 _refine.occupancy_min 0.30 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1271 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 11 _refine_hist.number_atoms_solvent 218 _refine_hist.number_atoms_total 1500 _refine_hist.d_res_high 1.450 _refine_hist.d_res_low 29.670 # loop_ _refine_ls_restr.type _refine_ls_restr.pdbx_refine_id _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 'X-RAY DIFFRACTION' 1433 0.015 0.022 ? ? r_bond_other_d 'X-RAY DIFFRACTION' 918 0.001 0.020 ? ? r_angle_refined_deg 'X-RAY DIFFRACTION' 1982 1.485 1.930 ? ? r_angle_other_deg 'X-RAY DIFFRACTION' 2234 0.878 3.000 ? ? r_dihedral_angle_1_deg 'X-RAY DIFFRACTION' 184 5.867 5.000 ? ? r_dihedral_angle_2_deg 'X-RAY DIFFRACTION' 71 32.904 24.648 ? ? r_dihedral_angle_3_deg 'X-RAY DIFFRACTION' 183 9.916 15.000 ? ? r_dihedral_angle_4_deg 'X-RAY DIFFRACTION' 7 17.857 15.000 ? ? r_chiral_restr 'X-RAY DIFFRACTION' 207 0.098 0.200 ? ? r_gen_planes_refined 'X-RAY DIFFRACTION' 1690 0.008 0.021 ? ? r_gen_planes_other 'X-RAY DIFFRACTION' 311 0.002 0.020 ? ? r_mcbond_it 'X-RAY DIFFRACTION' 894 0.915 1.500 ? ? r_mcbond_other 'X-RAY DIFFRACTION' 344 0.281 1.500 ? ? r_mcangle_it 'X-RAY DIFFRACTION' 1451 1.549 2.000 ? ? r_scbond_it 'X-RAY DIFFRACTION' 539 2.378 3.000 ? ? r_scangle_it 'X-RAY DIFFRACTION' 531 3.520 4.500 ? ? # loop_ _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso 'X-RAY DIFFRACTION' 1 1 'MEDIUM POSITIONAL' A 915 1.330 0.500 1 ? ? ? 'X-RAY DIFFRACTION' 1 1 'MEDIUM THERMAL' A 915 1.100 2.000 2 ? ? ? # _refine_ls_shell.d_res_high 1.451 _refine_ls_shell.d_res_low 1.489 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 97.050 _refine_ls_shell.number_reflns_R_work 2745 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.263 _refine_ls_shell.R_factor_R_free 0.271 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 149 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2894 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 A 1 2 B # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.selection_details _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id 1 1 1 4 A 7 A 88 ? . . . . . . . . 1 2 1 4 B 7 B 88 ? . . . . . . . . # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 3KWR _struct.title 'Crystal structure of Putative RNA-binding protein (NP_785364.1) from LACTOBACILLUS PLANTARUM at 1.45 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;Putative RNA-binding protein, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, RNA BINDING PROTEIN ; _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' _struct_keywords.entry_id 3KWR # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.details ;ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING SUPPORTS THE ASSIGNMENT OF A DIMER AS A SIGNIFICANT OLIGOMERIZATION STATE. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 VAL A 29 ? GLN A 33 ? VAL A 28 GLN A 32 5 ? 5 HELX_P HELX_P2 2 SER A 38 ? PHE A 55 ? SER A 37 PHE A 54 1 ? 18 HELX_P HELX_P3 3 ASP A 64 ? TRP A 68 ? ASP A 63 TRP A 67 5 ? 5 HELX_P HELX_P4 4 VAL B 29 ? GLN B 33 ? VAL B 28 GLN B 32 5 ? 5 HELX_P HELX_P5 5 SER B 38 ? LEU B 54 ? SER B 37 LEU B 53 1 ? 17 HELX_P HELX_P6 6 ASP B 64 ? TRP B 68 ? ASP B 63 TRP B 67 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A THR 80 C ? ? ? 1_555 A MSE 81 N ? ? A THR 79 A MSE 80 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale2 covale both ? A MSE 81 C ? ? ? 1_555 A ALA 82 N ? ? A MSE 80 A ALA 81 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale3 covale both ? B THR 80 C ? ? ? 1_555 B MSE 81 N ? ? B THR 79 B MSE 80 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale4 covale both ? B MSE 81 C ? ? ? 1_555 B ALA 82 N ? ? B MSE 80 B ALA 81 1_555 ? ? ? ? ? ? ? 1.327 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 34 ? GLY A 36 ? THR A 33 GLY A 35 A 2 TRP A 22 ? ARG A 25 ? TRP A 21 ARG A 24 A 3 LYS A 10 ? ASP A 17 ? LYS A 9 ASP A 16 A 4 GLU A 74 ? THR A 80 ? GLU A 73 THR A 79 B 1 THR B 34 ? GLY B 36 ? THR B 33 GLY B 35 B 2 TRP B 22 ? ARG B 25 ? TRP B 21 ARG B 24 B 3 LYS B 10 ? ASP B 17 ? LYS B 9 ASP B 16 B 4 GLU B 74 ? THR B 80 ? GLU B 73 THR B 79 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLY A 36 ? O GLY A 35 N TRP A 22 ? N TRP A 21 A 2 3 O ARG A 25 ? O ARG A 24 N ILE A 14 ? N ILE A 13 A 3 4 N PHE A 15 ? N PHE A 14 O PHE A 75 ? O PHE A 74 B 1 2 O GLY B 36 ? O GLY B 35 N TRP B 22 ? N TRP B 21 B 2 3 O ARG B 25 ? O ARG B 24 N ILE B 14 ? N ILE B 13 B 3 4 N PHE B 15 ? N PHE B 14 O PHE B 75 ? O PHE B 74 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 97 ? 7 'BINDING SITE FOR RESIDUE SO4 A 97' AC2 Software A GOL 98 ? 12 'BINDING SITE FOR RESIDUE GOL A 98' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 TRP A 78 ? TRP A 77 . ? 5_664 ? 2 AC1 7 GLN A 85 ? GLN A 84 . ? 1_555 ? 3 AC1 7 PHE A 86 ? PHE A 85 . ? 1_555 ? 4 AC1 7 GLY A 87 ? GLY A 86 . ? 1_555 ? 5 AC1 7 GOL D . ? GOL A 98 . ? 5_664 ? 6 AC1 7 HOH E . ? HOH A 127 . ? 1_555 ? 7 AC1 7 ARG B 69 ? ARG B 68 . ? 5_665 ? 8 AC2 12 PRO A 65 ? PRO A 64 . ? 1_555 ? 9 AC2 12 VAL A 76 ? VAL A 75 . ? 1_555 ? 10 AC2 12 TRP A 78 ? TRP A 77 . ? 1_555 ? 11 AC2 12 PHE A 86 ? PHE A 85 . ? 6_545 ? 12 AC2 12 SO4 C . ? SO4 A 97 . ? 6_545 ? 13 AC2 12 HOH E . ? HOH A 100 . ? 1_555 ? 14 AC2 12 HOH E . ? HOH A 103 . ? 1_555 ? 15 AC2 12 HOH E . ? HOH A 166 . ? 1_555 ? 16 AC2 12 HOH E . ? HOH A 204 . ? 1_555 ? 17 AC2 12 ALA B 37 ? ALA B 36 . ? 6_545 ? 18 AC2 12 SER B 38 ? SER B 37 . ? 6_545 ? 19 AC2 12 HOH F . ? HOH B 141 . ? 6_545 ? # _atom_sites.entry_id 3KWR _atom_sites.fract_transf_matrix[1][1] 0.009536 _atom_sites.fract_transf_matrix[1][2] 0.005505 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011011 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.027794 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MSE 2 1 ? ? ? A . n A 1 3 ASN 3 2 ? ? ? A . n A 1 4 HIS 4 3 ? ? ? A . n A 1 5 ASN 5 4 ? ? ? A . n A 1 6 TYR 6 5 ? ? ? A . n A 1 7 VAL 7 6 ? ? ? A . n A 1 8 GLU 8 7 7 GLU GLU A . n A 1 9 VAL 9 8 8 VAL VAL A . n A 1 10 LYS 10 9 9 LYS LYS A . n A 1 11 TYR 11 10 10 TYR TYR A . n A 1 12 PRO 12 11 11 PRO PRO A . n A 1 13 ALA 13 12 12 ALA ALA A . n A 1 14 ILE 14 13 13 ILE ILE A . n A 1 15 PHE 15 14 14 PHE PHE A . n A 1 16 ARG 16 15 15 ARG ARG A . n A 1 17 ASP 17 16 16 ASP ASP A . n A 1 18 GLU 18 17 17 GLU GLU A . n A 1 19 GLY 19 18 18 GLY GLY A . n A 1 20 THR 20 19 19 THR THR A . n A 1 21 TYR 21 20 20 TYR TYR A . n A 1 22 TRP 22 21 21 TRP TRP A . n A 1 23 ASP 23 22 22 ASP ASP A . n A 1 24 VAL 24 23 23 VAL VAL A . n A 1 25 ARG 25 24 24 ARG ARG A . n A 1 26 PHE 26 25 25 PHE PHE A . n A 1 27 PRO 27 26 26 PRO PRO A . n A 1 28 ASP 28 27 27 ASP ASP A . n A 1 29 VAL 29 28 28 VAL VAL A . n A 1 30 PRO 30 29 29 PRO PRO A . n A 1 31 ALA 31 30 30 ALA ALA A . n A 1 32 ALA 32 31 31 ALA ALA A . n A 1 33 GLN 33 32 32 GLN GLN A . n A 1 34 THR 34 33 33 THR THR A . n A 1 35 PHE 35 34 34 PHE PHE A . n A 1 36 GLY 36 35 35 GLY GLY A . n A 1 37 ALA 37 36 36 ALA ALA A . n A 1 38 SER 38 37 37 SER SER A . n A 1 39 VAL 39 38 38 VAL VAL A . n A 1 40 GLN 40 39 39 GLN GLN A . n A 1 41 VAL 41 40 40 VAL VAL A . n A 1 42 ALA 42 41 41 ALA ALA A . n A 1 43 ALA 43 42 42 ALA ALA A . n A 1 44 ASP 44 43 43 ASP ASP A . n A 1 45 ASN 45 44 44 ASN ASN A . n A 1 46 ALA 46 45 45 ALA ALA A . n A 1 47 ALA 47 46 46 ALA ALA A . n A 1 48 ASN 48 47 47 ASN ASN A . n A 1 49 ALA 49 48 48 ALA ALA A . n A 1 50 LEU 50 49 49 LEU LEU A . n A 1 51 ALA 51 50 50 ALA ALA A . n A 1 52 ILE 52 51 51 ILE ILE A . n A 1 53 ALA 53 52 52 ALA ALA A . n A 1 54 LEU 54 53 53 LEU LEU A . n A 1 55 PHE 55 54 54 PHE PHE A . n A 1 56 GLU 56 55 55 GLU GLU A . n A 1 57 GLN 57 56 56 GLN GLN A . n A 1 58 SER 58 57 57 SER SER A . n A 1 59 LEU 59 58 58 LEU LEU A . n A 1 60 PRO 60 59 59 PRO PRO A . n A 1 61 PRO 61 60 60 PRO PRO A . n A 1 62 ALA 62 61 61 ALA ALA A . n A 1 63 SER 63 62 62 SER SER A . n A 1 64 ASP 64 63 63 ASP ASP A . n A 1 65 PRO 65 64 64 PRO PRO A . n A 1 66 GLN 66 65 65 GLN GLN A . n A 1 67 TYR 67 66 66 TYR TYR A . n A 1 68 TRP 68 67 67 TRP TRP A . n A 1 69 ARG 69 68 68 ARG ARG A . n A 1 70 LEU 70 69 69 LEU LEU A . n A 1 71 ALA 71 70 70 ALA ALA A . n A 1 72 SER 72 71 71 SER SER A . n A 1 73 THR 73 72 72 THR THR A . n A 1 74 GLU 74 73 73 GLU GLU A . n A 1 75 PHE 75 74 74 PHE PHE A . n A 1 76 VAL 76 75 75 VAL VAL A . n A 1 77 VAL 77 76 76 VAL VAL A . n A 1 78 TRP 78 77 77 TRP TRP A . n A 1 79 ILE 79 78 78 ILE ILE A . n A 1 80 THR 80 79 79 THR THR A . n A 1 81 MSE 81 80 80 MSE MSE A . n A 1 82 ALA 82 81 81 ALA ALA A . n A 1 83 ASP 83 82 82 ASP ASP A . n A 1 84 VAL 84 83 83 VAL VAL A . n A 1 85 GLN 85 84 84 GLN GLN A . n A 1 86 PHE 86 85 85 PHE PHE A . n A 1 87 GLY 87 86 86 GLY GLY A . n A 1 88 PRO 88 87 87 PRO PRO A . n A 1 89 GLY 89 88 88 GLY GLY A . n A 1 90 ALA 90 89 89 ALA ALA A . n A 1 91 ASP 91 90 ? ? ? A . n A 1 92 THR 92 91 ? ? ? A . n A 1 93 PRO 93 92 ? ? ? A . n A 1 94 GLU 94 93 ? ? ? A . n A 1 95 PRO 95 94 ? ? ? A . n A 1 96 MSE 96 95 ? ? ? A . n A 1 97 ASN 97 96 ? ? ? A . n B 1 1 GLY 1 0 ? ? ? B . n B 1 2 MSE 2 1 ? ? ? B . n B 1 3 ASN 3 2 ? ? ? B . n B 1 4 HIS 4 3 ? ? ? B . n B 1 5 ASN 5 4 ? ? ? B . n B 1 6 TYR 6 5 ? ? ? B . n B 1 7 VAL 7 6 ? ? ? B . n B 1 8 GLU 8 7 7 GLU GLU B . n B 1 9 VAL 9 8 8 VAL VAL B . n B 1 10 LYS 10 9 9 LYS LYS B . n B 1 11 TYR 11 10 10 TYR TYR B . n B 1 12 PRO 12 11 11 PRO PRO B . n B 1 13 ALA 13 12 12 ALA ALA B . n B 1 14 ILE 14 13 13 ILE ILE B . n B 1 15 PHE 15 14 14 PHE PHE B . n B 1 16 ARG 16 15 15 ARG ARG B . n B 1 17 ASP 17 16 16 ASP ASP B . n B 1 18 GLU 18 17 17 GLU GLU B . n B 1 19 GLY 19 18 18 GLY GLY B . n B 1 20 THR 20 19 19 THR THR B . n B 1 21 TYR 21 20 20 TYR TYR B . n B 1 22 TRP 22 21 21 TRP TRP B . n B 1 23 ASP 23 22 22 ASP ASP B . n B 1 24 VAL 24 23 23 VAL VAL B . n B 1 25 ARG 25 24 24 ARG ARG B . n B 1 26 PHE 26 25 25 PHE PHE B . n B 1 27 PRO 27 26 26 PRO PRO B . n B 1 28 ASP 28 27 27 ASP ASP B . n B 1 29 VAL 29 28 28 VAL VAL B . n B 1 30 PRO 30 29 29 PRO PRO B . n B 1 31 ALA 31 30 30 ALA ALA B . n B 1 32 ALA 32 31 31 ALA ALA B . n B 1 33 GLN 33 32 32 GLN GLN B . n B 1 34 THR 34 33 33 THR THR B . n B 1 35 PHE 35 34 34 PHE PHE B . n B 1 36 GLY 36 35 35 GLY GLY B . n B 1 37 ALA 37 36 36 ALA ALA B . n B 1 38 SER 38 37 37 SER SER B . n B 1 39 VAL 39 38 38 VAL VAL B . n B 1 40 GLN 40 39 39 GLN GLN B . n B 1 41 VAL 41 40 40 VAL VAL B . n B 1 42 ALA 42 41 41 ALA ALA B . n B 1 43 ALA 43 42 42 ALA ALA B . n B 1 44 ASP 44 43 43 ASP ASP B . n B 1 45 ASN 45 44 44 ASN ASN B . n B 1 46 ALA 46 45 45 ALA ALA B . n B 1 47 ALA 47 46 46 ALA ALA B . n B 1 48 ASN 48 47 47 ASN ASN B . n B 1 49 ALA 49 48 48 ALA ALA B . n B 1 50 LEU 50 49 49 LEU LEU B . n B 1 51 ALA 51 50 50 ALA ALA B . n B 1 52 ILE 52 51 51 ILE ILE B . n B 1 53 ALA 53 52 52 ALA ALA B . n B 1 54 LEU 54 53 53 LEU LEU B . n B 1 55 PHE 55 54 54 PHE PHE B . n B 1 56 GLU 56 55 55 GLU GLU B . n B 1 57 GLN 57 56 56 GLN GLN B . n B 1 58 SER 58 57 57 SER SER B . n B 1 59 LEU 59 58 58 LEU LEU B . n B 1 60 PRO 60 59 59 PRO PRO B . n B 1 61 PRO 61 60 60 PRO PRO B . n B 1 62 ALA 62 61 61 ALA ALA B . n B 1 63 SER 63 62 62 SER SER B . n B 1 64 ASP 64 63 63 ASP ASP B . n B 1 65 PRO 65 64 64 PRO PRO B . n B 1 66 GLN 66 65 65 GLN GLN B . n B 1 67 TYR 67 66 66 TYR TYR B . n B 1 68 TRP 68 67 67 TRP TRP B . n B 1 69 ARG 69 68 68 ARG ARG B . n B 1 70 LEU 70 69 69 LEU LEU B . n B 1 71 ALA 71 70 70 ALA ALA B . n B 1 72 SER 72 71 71 SER SER B . n B 1 73 THR 73 72 72 THR THR B . n B 1 74 GLU 74 73 73 GLU GLU B . n B 1 75 PHE 75 74 74 PHE PHE B . n B 1 76 VAL 76 75 75 VAL VAL B . n B 1 77 VAL 77 76 76 VAL VAL B . n B 1 78 TRP 78 77 77 TRP TRP B . n B 1 79 ILE 79 78 78 ILE ILE B . n B 1 80 THR 80 79 79 THR THR B . n B 1 81 MSE 81 80 80 MSE MSE B . n B 1 82 ALA 82 81 81 ALA ALA B . n B 1 83 ASP 83 82 82 ASP ASP B . n B 1 84 VAL 84 83 83 VAL VAL B . n B 1 85 GLN 85 84 84 GLN GLN B . n B 1 86 PHE 86 85 85 PHE PHE B . n B 1 87 GLY 87 86 86 GLY GLY B . n B 1 88 PRO 88 87 87 PRO PRO B . n B 1 89 GLY 89 88 88 GLY GLY B . n B 1 90 ALA 90 89 ? ? ? B . n B 1 91 ASP 91 90 ? ? ? B . n B 1 92 THR 92 91 ? ? ? B . n B 1 93 PRO 93 92 ? ? ? B . n B 1 94 GLU 94 93 ? ? ? B . n B 1 95 PRO 95 94 ? ? ? B . n B 1 96 MSE 96 95 ? ? ? B . n B 1 97 ASN 97 96 ? ? ? B . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 1 97 1 SO4 SO4 A . D 3 GOL 1 98 2 GOL GOL A . E 4 HOH 1 99 99 HOH HOH A . E 4 HOH 2 100 5 HOH HOH A . E 4 HOH 3 101 6 HOH HOH A . E 4 HOH 4 102 7 HOH HOH A . E 4 HOH 5 103 9 HOH HOH A . E 4 HOH 6 104 104 HOH HOH A . E 4 HOH 7 105 105 HOH HOH A . E 4 HOH 8 106 10 HOH HOH A . E 4 HOH 9 107 11 HOH HOH A . E 4 HOH 10 108 12 HOH HOH A . E 4 HOH 11 109 13 HOH HOH A . E 4 HOH 12 110 15 HOH HOH A . E 4 HOH 13 111 111 HOH HOH A . E 4 HOH 14 112 112 HOH HOH A . E 4 HOH 15 113 113 HOH HOH A . E 4 HOH 16 114 114 HOH HOH A . E 4 HOH 17 115 115 HOH HOH A . E 4 HOH 18 116 116 HOH HOH A . E 4 HOH 19 117 117 HOH HOH A . E 4 HOH 20 118 118 HOH HOH A . E 4 HOH 21 119 17 HOH HOH A . E 4 HOH 22 120 120 HOH HOH A . E 4 HOH 23 121 18 HOH HOH A . E 4 HOH 24 122 20 HOH HOH A . E 4 HOH 25 123 123 HOH HOH A . E 4 HOH 26 124 124 HOH HOH A . E 4 HOH 27 125 125 HOH HOH A . E 4 HOH 28 126 22 HOH HOH A . E 4 HOH 29 127 127 HOH HOH A . E 4 HOH 30 128 23 HOH HOH A . E 4 HOH 31 129 129 HOH HOH A . E 4 HOH 32 130 130 HOH HOH A . E 4 HOH 33 131 24 HOH HOH A . E 4 HOH 34 132 25 HOH HOH A . E 4 HOH 35 133 26 HOH HOH A . E 4 HOH 36 134 27 HOH HOH A . E 4 HOH 37 135 29 HOH HOH A . E 4 HOH 38 136 31 HOH HOH A . E 4 HOH 39 137 137 HOH HOH A . E 4 HOH 40 138 36 HOH HOH A . E 4 HOH 41 139 38 HOH HOH A . E 4 HOH 42 140 39 HOH HOH A . E 4 HOH 43 141 141 HOH HOH A . E 4 HOH 44 142 40 HOH HOH A . E 4 HOH 45 143 143 HOH HOH A . E 4 HOH 46 144 144 HOH HOH A . E 4 HOH 47 145 145 HOH HOH A . E 4 HOH 48 146 146 HOH HOH A . E 4 HOH 49 147 41 HOH HOH A . E 4 HOH 50 148 50 HOH HOH A . E 4 HOH 51 149 51 HOH HOH A . E 4 HOH 52 150 54 HOH HOH A . E 4 HOH 53 151 55 HOH HOH A . E 4 HOH 54 152 152 HOH HOH A . E 4 HOH 55 153 153 HOH HOH A . E 4 HOH 56 154 154 HOH HOH A . E 4 HOH 57 155 57 HOH HOH A . E 4 HOH 58 156 58 HOH HOH A . E 4 HOH 59 157 157 HOH HOH A . E 4 HOH 60 158 61 HOH HOH A . E 4 HOH 61 159 159 HOH HOH A . E 4 HOH 62 160 160 HOH HOH A . E 4 HOH 63 161 161 HOH HOH A . E 4 HOH 64 162 62 HOH HOH A . E 4 HOH 65 163 65 HOH HOH A . E 4 HOH 66 164 66 HOH HOH A . E 4 HOH 67 165 165 HOH HOH A . E 4 HOH 68 166 69 HOH HOH A . E 4 HOH 69 167 167 HOH HOH A . E 4 HOH 70 168 168 HOH HOH A . E 4 HOH 71 169 169 HOH HOH A . E 4 HOH 72 170 170 HOH HOH A . E 4 HOH 73 171 171 HOH HOH A . E 4 HOH 74 172 71 HOH HOH A . E 4 HOH 75 173 173 HOH HOH A . E 4 HOH 76 174 73 HOH HOH A . E 4 HOH 77 175 74 HOH HOH A . E 4 HOH 78 176 176 HOH HOH A . E 4 HOH 79 177 177 HOH HOH A . E 4 HOH 80 178 76 HOH HOH A . E 4 HOH 81 179 78 HOH HOH A . E 4 HOH 82 180 180 HOH HOH A . E 4 HOH 83 181 181 HOH HOH A . E 4 HOH 84 182 182 HOH HOH A . E 4 HOH 85 183 183 HOH HOH A . E 4 HOH 86 184 184 HOH HOH A . E 4 HOH 87 185 81 HOH HOH A . E 4 HOH 88 186 82 HOH HOH A . E 4 HOH 89 187 84 HOH HOH A . E 4 HOH 90 188 188 HOH HOH A . E 4 HOH 91 189 87 HOH HOH A . E 4 HOH 92 190 88 HOH HOH A . E 4 HOH 93 191 191 HOH HOH A . E 4 HOH 94 192 192 HOH HOH A . E 4 HOH 95 193 89 HOH HOH A . E 4 HOH 96 194 194 HOH HOH A . E 4 HOH 97 195 90 HOH HOH A . E 4 HOH 98 196 196 HOH HOH A . E 4 HOH 99 197 197 HOH HOH A . E 4 HOH 100 198 91 HOH HOH A . E 4 HOH 101 199 199 HOH HOH A . E 4 HOH 102 200 200 HOH HOH A . E 4 HOH 103 201 201 HOH HOH A . E 4 HOH 104 202 92 HOH HOH A . E 4 HOH 105 203 97 HOH HOH A . E 4 HOH 106 204 204 HOH HOH A . E 4 HOH 107 205 205 HOH HOH A . E 4 HOH 108 206 98 HOH HOH A . E 4 HOH 109 207 207 HOH HOH A . E 4 HOH 110 208 208 HOH HOH A . E 4 HOH 111 209 209 HOH HOH A . E 4 HOH 112 210 210 HOH HOH A . E 4 HOH 113 211 179 HOH HOH A . E 4 HOH 114 213 213 HOH HOH A . E 4 HOH 115 214 214 HOH HOH A . E 4 HOH 116 217 217 HOH HOH A . E 4 HOH 117 218 218 HOH HOH A . E 4 HOH 118 220 220 HOH HOH A . F 4 HOH 1 97 3 HOH HOH B . F 4 HOH 2 98 4 HOH HOH B . F 4 HOH 3 99 8 HOH HOH B . F 4 HOH 4 100 100 HOH HOH B . F 4 HOH 5 101 101 HOH HOH B . F 4 HOH 6 102 102 HOH HOH B . F 4 HOH 7 103 103 HOH HOH B . F 4 HOH 8 104 14 HOH HOH B . F 4 HOH 9 105 16 HOH HOH B . F 4 HOH 10 106 106 HOH HOH B . F 4 HOH 11 107 107 HOH HOH B . F 4 HOH 12 108 108 HOH HOH B . F 4 HOH 13 109 109 HOH HOH B . F 4 HOH 14 110 110 HOH HOH B . F 4 HOH 15 111 19 HOH HOH B . F 4 HOH 16 112 21 HOH HOH B . F 4 HOH 17 113 28 HOH HOH B . F 4 HOH 18 114 30 HOH HOH B . F 4 HOH 19 115 32 HOH HOH B . F 4 HOH 20 116 33 HOH HOH B . F 4 HOH 21 117 34 HOH HOH B . F 4 HOH 22 118 35 HOH HOH B . F 4 HOH 23 119 119 HOH HOH B . F 4 HOH 24 120 37 HOH HOH B . F 4 HOH 25 121 121 HOH HOH B . F 4 HOH 26 122 122 HOH HOH B . F 4 HOH 27 123 42 HOH HOH B . F 4 HOH 28 124 43 HOH HOH B . F 4 HOH 29 125 44 HOH HOH B . F 4 HOH 30 126 126 HOH HOH B . F 4 HOH 31 127 45 HOH HOH B . F 4 HOH 32 128 128 HOH HOH B . F 4 HOH 33 129 46 HOH HOH B . F 4 HOH 34 130 47 HOH HOH B . F 4 HOH 35 131 131 HOH HOH B . F 4 HOH 36 132 132 HOH HOH B . F 4 HOH 37 133 133 HOH HOH B . F 4 HOH 38 134 134 HOH HOH B . F 4 HOH 39 135 135 HOH HOH B . F 4 HOH 40 136 136 HOH HOH B . F 4 HOH 41 137 48 HOH HOH B . F 4 HOH 42 138 138 HOH HOH B . F 4 HOH 43 139 139 HOH HOH B . F 4 HOH 44 140 140 HOH HOH B . F 4 HOH 45 141 49 HOH HOH B . F 4 HOH 46 142 142 HOH HOH B . F 4 HOH 47 143 52 HOH HOH B . F 4 HOH 48 144 53 HOH HOH B . F 4 HOH 49 145 56 HOH HOH B . F 4 HOH 50 146 59 HOH HOH B . F 4 HOH 51 147 147 HOH HOH B . F 4 HOH 52 148 148 HOH HOH B . F 4 HOH 53 149 149 HOH HOH B . F 4 HOH 54 150 150 HOH HOH B . F 4 HOH 55 151 151 HOH HOH B . F 4 HOH 56 152 60 HOH HOH B . F 4 HOH 57 153 63 HOH HOH B . F 4 HOH 58 154 64 HOH HOH B . F 4 HOH 59 155 155 HOH HOH B . F 4 HOH 60 156 156 HOH HOH B . F 4 HOH 61 157 67 HOH HOH B . F 4 HOH 62 158 158 HOH HOH B . F 4 HOH 63 159 68 HOH HOH B . F 4 HOH 64 160 70 HOH HOH B . F 4 HOH 65 161 72 HOH HOH B . F 4 HOH 66 162 162 HOH HOH B . F 4 HOH 67 163 163 HOH HOH B . F 4 HOH 68 164 164 HOH HOH B . F 4 HOH 69 165 75 HOH HOH B . F 4 HOH 70 166 166 HOH HOH B . F 4 HOH 71 167 77 HOH HOH B . F 4 HOH 72 168 79 HOH HOH B . F 4 HOH 73 169 80 HOH HOH B . F 4 HOH 74 170 83 HOH HOH B . F 4 HOH 75 171 85 HOH HOH B . F 4 HOH 76 172 172 HOH HOH B . F 4 HOH 77 173 86 HOH HOH B . F 4 HOH 78 174 174 HOH HOH B . F 4 HOH 79 175 175 HOH HOH B . F 4 HOH 80 176 93 HOH HOH B . F 4 HOH 81 177 94 HOH HOH B . F 4 HOH 82 178 178 HOH HOH B . F 4 HOH 83 180 95 HOH HOH B . F 4 HOH 84 181 96 HOH HOH B . F 4 HOH 85 185 185 HOH HOH B . F 4 HOH 86 186 186 HOH HOH B . F 4 HOH 87 187 187 HOH HOH B . F 4 HOH 88 189 189 HOH HOH B . F 4 HOH 89 190 190 HOH HOH B . F 4 HOH 90 193 193 HOH HOH B . F 4 HOH 91 195 195 HOH HOH B . F 4 HOH 92 198 198 HOH HOH B . F 4 HOH 93 202 202 HOH HOH B . F 4 HOH 94 203 203 HOH HOH B . F 4 HOH 95 206 206 HOH HOH B . F 4 HOH 96 211 211 HOH HOH B . F 4 HOH 97 212 212 HOH HOH B . F 4 HOH 98 215 215 HOH HOH B . F 4 HOH 99 216 216 HOH HOH B . F 4 HOH 100 219 219 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 81 A MSE 80 ? MET SELENOMETHIONINE 2 B MSE 81 B MSE 80 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1730 ? 1 MORE -27 ? 1 'SSA (A^2)' 9350 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-12-22 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-17 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Author supporting evidence' 4 3 'Structure model' 'Refinement description' 5 4 'Structure model' Advisory 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' 'Refinement description' 9 5 'Structure model' 'Database references' 10 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_struct_assembly_auth_evidence 2 3 'Structure model' software 3 4 'Structure model' pdbx_distant_solvent_atoms 4 4 'Structure model' software 5 4 'Structure model' struct_conn 6 5 'Structure model' database_2 7 5 'Structure model' struct_ref_seq_dif 8 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 5 'Structure model' '_database_2.pdbx_DOI' 12 5 'Structure model' '_database_2.pdbx_database_accession' 13 5 'Structure model' '_struct_ref_seq_dif.details' 14 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 15 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 16 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 76.1744 15.3056 4.3988 0.0507 0.0133 0.0181 -0.0149 -0.0002 -0.0102 1.2121 1.2211 1.2014 0.8067 -0.5774 -0.6416 0.0499 -0.0108 -0.0391 -0.0713 0.0158 -0.0683 0.0326 -0.0998 0.0770 'X-RAY DIFFRACTION' 2 ? refined 77.8679 28.8344 -9.4690 0.0306 0.0142 0.0328 -0.0135 0.0096 0.0000 0.3937 1.9776 0.7042 0.4137 0.0622 0.4194 -0.0161 -0.0171 0.0332 0.0183 -0.0041 0.0908 -0.0308 0.0004 -0.0338 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 7 A 89 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 B 7 B 88 ? . . . . ? # _phasing.method SAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.5.0053 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? 7 autoSHARP . ? ? ? ? phasing ? ? ? 8 # _pdbx_entry_details.entry_id 3KWR _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 22 ? B CG A ASP 22 ? B OD1 A ASP 22 ? B 127.00 118.30 8.70 0.90 N 2 1 NE B ARG 24 ? A CZ B ARG 24 ? A NH2 B ARG 24 ? A 116.40 120.30 -3.90 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 55 ? ? 59.49 19.53 2 1 ASP A 82 ? ? -157.06 80.81 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 194 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.00 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 68 ? CG ? A ARG 69 CG 2 1 Y 1 A ARG 68 ? CD ? A ARG 69 CD 3 1 Y 1 A ARG 68 ? NE ? A ARG 69 NE 4 1 Y 1 A ARG 68 ? CZ ? A ARG 69 CZ 5 1 Y 1 A ARG 68 ? NH1 ? A ARG 69 NH1 6 1 Y 1 A ARG 68 ? NH2 ? A ARG 69 NH2 7 1 Y 1 B GLU 7 ? CG ? B GLU 8 CG 8 1 Y 1 B GLU 7 ? CD ? B GLU 8 CD 9 1 Y 1 B GLU 7 ? OE1 ? B GLU 8 OE1 10 1 Y 1 B GLU 7 ? OE2 ? B GLU 8 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A MSE 1 ? A MSE 2 3 1 Y 1 A ASN 2 ? A ASN 3 4 1 Y 1 A HIS 3 ? A HIS 4 5 1 Y 1 A ASN 4 ? A ASN 5 6 1 Y 1 A TYR 5 ? A TYR 6 7 1 Y 1 A VAL 6 ? A VAL 7 8 1 Y 1 A ASP 90 ? A ASP 91 9 1 Y 1 A THR 91 ? A THR 92 10 1 Y 1 A PRO 92 ? A PRO 93 11 1 Y 1 A GLU 93 ? A GLU 94 12 1 Y 1 A PRO 94 ? A PRO 95 13 1 Y 1 A MSE 95 ? A MSE 96 14 1 Y 1 A ASN 96 ? A ASN 97 15 1 Y 1 B GLY 0 ? B GLY 1 16 1 Y 1 B MSE 1 ? B MSE 2 17 1 Y 1 B ASN 2 ? B ASN 3 18 1 Y 1 B HIS 3 ? B HIS 4 19 1 Y 1 B ASN 4 ? B ASN 5 20 1 Y 1 B TYR 5 ? B TYR 6 21 1 Y 1 B VAL 6 ? B VAL 7 22 1 Y 1 B ALA 89 ? B ALA 90 23 1 Y 1 B ASP 90 ? B ASP 91 24 1 Y 1 B THR 91 ? B THR 92 25 1 Y 1 B PRO 92 ? B PRO 93 26 1 Y 1 B GLU 93 ? B GLU 94 27 1 Y 1 B PRO 94 ? B PRO 95 28 1 Y 1 B MSE 95 ? B MSE 96 29 1 Y 1 B ASN 96 ? B ASN 97 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 GLYCEROL GOL 4 water HOH # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'gel filtration' ? 2 1 'light scattering' ? #