HEADER TRANSFERASE 04-DEC-09 3KY7 TITLE 2.35 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF A PUTATIVE TRNA TITLE 2 (GUANINE-7-)-METHYLTRANSFERASE (TRMD) FROM STAPHYLOCOCCUS AUREUS TITLE 3 SUBSP. AUREUS MRSA252 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: M1G-METHYLTRANSFERASE, TRNA [GM37] METHYLTRANSFERASE, COMPND 5 PUTATIVE TRNA (GUANINE-7-)-METHYLTRANSFERASE; COMPND 6 EC: 2.1.1.31; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS; SOURCE 3 ORGANISM_TAXID: 282458; SOURCE 4 STRAIN: MRSA252; SOURCE 5 GENE: SAR1216, TRMD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODONPLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS PUTATIVE TRNA (GUANINE-7-)-METHYLTRANSFERASE, STRUCTURAL GENOMICS, KEYWDS 2 INFECTIOUS DISEASES, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 3 DISEASES, METHYLTRANSFERASE, S-ADENOSYL-L-METHIONINE, TRANSFERASE, KEYWDS 4 TRNA PROCESSING, CSGID EXPDTA X-RAY DIFFRACTION AUTHOR A.S.HALAVATY,G.MINASOV,J.WINSOR,I.DUBROVSKA,L.SHUVALOVA,R.SEE, AUTHOR 2 R.ZORAGHI,N.REINER,W.F.ANDERSON,CENTER FOR STRUCTURAL GENOMICS OF AUTHOR 3 INFECTIOUS DISEASES (CSGID) REVDAT 3 01-NOV-17 3KY7 1 REMARK REVDAT 2 13-JUL-11 3KY7 1 VERSN REVDAT 1 22-DEC-09 3KY7 0 JRNL AUTH A.S.HALAVATY,G.MINASOV,J.WINSOR,I.DUBROVSKA,L.SHUVALOVA, JRNL AUTH 2 R.SEE,R.ZORAGHI,N.REINER,W.F.ANDERSON, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL 2.35 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF A PUTATIVE JRNL TITL 2 TRNA (GUANINE-7-)-METHYLTRANSFERASE (TRMD) FROM JRNL TITL 3 STAPHYLOCOCCUS AUREUS SUBSP. AUREUS MRSA252 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 13785 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 732 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 998 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 57 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1849 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 83 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.284 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.230 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.152 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.764 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1900 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1301 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2571 ; 1.746 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3174 ; 0.928 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 228 ; 2.469 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 96 ;27.856 ;24.479 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 338 ;11.351 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;11.909 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 277 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2097 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 370 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1145 ; 0.772 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 462 ; 0.205 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1855 ; 1.385 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 755 ; 2.391 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 716 ; 3.934 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 16 REMARK 3 ORIGIN FOR THE GROUP (A): 55.1535 98.5709 60.1111 REMARK 3 T TENSOR REMARK 3 T11: 1.3581 T22: 0.3934 REMARK 3 T33: 0.2120 T12: -0.3426 REMARK 3 T13: -0.0770 T23: -0.0216 REMARK 3 L TENSOR REMARK 3 L11: 7.5732 L22: 7.6367 REMARK 3 L33: 6.5688 L12: 0.2026 REMARK 3 L13: -2.0821 L23: -4.5856 REMARK 3 S TENSOR REMARK 3 S11: 0.7399 S12: -0.4881 S13: 0.8481 REMARK 3 S21: 1.6845 S22: -0.4897 S23: 0.0474 REMARK 3 S31: -0.8033 S32: 0.3850 S33: -0.2502 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 17 A 46 REMARK 3 ORIGIN FOR THE GROUP (A): 58.6647 98.4051 63.0614 REMARK 3 T TENSOR REMARK 3 T11: 1.5481 T22: 0.8771 REMARK 3 T33: 0.3946 T12: -0.2944 REMARK 3 T13: -0.1057 T23: -0.1506 REMARK 3 L TENSOR REMARK 3 L11: 6.3960 L22: 12.6356 REMARK 3 L33: 3.8736 L12: 1.8164 REMARK 3 L13: -1.9416 L23: -6.4718 REMARK 3 S TENSOR REMARK 3 S11: -0.0746 S12: -1.1086 S13: 0.0350 REMARK 3 S21: 1.0846 S22: 0.1189 S23: 0.7468 REMARK 3 S31: -0.5417 S32: 0.1338 S33: -0.0442 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 47 A 76 REMARK 3 ORIGIN FOR THE GROUP (A): 57.6905 106.8621 43.8027 REMARK 3 T TENSOR REMARK 3 T11: 0.8176 T22: 0.1459 REMARK 3 T33: 0.1960 T12: -0.2335 REMARK 3 T13: 0.1186 T23: -0.0626 REMARK 3 L TENSOR REMARK 3 L11: 7.0376 L22: 5.6076 REMARK 3 L33: 16.9795 L12: -0.1449 REMARK 3 L13: 4.1592 L23: -3.7198 REMARK 3 S TENSOR REMARK 3 S11: 0.6375 S12: -0.8102 S13: 0.3788 REMARK 3 S21: 1.5505 S22: -0.5060 S23: -0.0747 REMARK 3 S31: -0.8766 S32: -0.1343 S33: -0.1316 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 77 A 113 REMARK 3 ORIGIN FOR THE GROUP (A): 59.3168 88.7962 50.5055 REMARK 3 T TENSOR REMARK 3 T11: 0.7394 T22: 0.4150 REMARK 3 T33: 0.2703 T12: -0.1689 REMARK 3 T13: -0.0978 T23: 0.1187 REMARK 3 L TENSOR REMARK 3 L11: 1.6763 L22: 6.1642 REMARK 3 L33: 5.8346 L12: 1.0939 REMARK 3 L13: -1.0461 L23: -1.2045 REMARK 3 S TENSOR REMARK 3 S11: -0.0010 S12: -0.2208 S13: -0.0983 REMARK 3 S21: 0.9436 S22: -0.2393 S23: -0.3826 REMARK 3 S31: -0.2520 S32: 0.7192 S33: 0.2402 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 114 A 171 REMARK 3 ORIGIN FOR THE GROUP (A): 54.8424 90.2059 50.3214 REMARK 3 T TENSOR REMARK 3 T11: 0.7781 T22: 0.2942 REMARK 3 T33: 0.1462 T12: -0.1206 REMARK 3 T13: -0.0460 T23: 0.0407 REMARK 3 L TENSOR REMARK 3 L11: 1.5861 L22: 5.4810 REMARK 3 L33: 2.9589 L12: 1.7248 REMARK 3 L13: -1.5191 L23: -3.9590 REMARK 3 S TENSOR REMARK 3 S11: 0.1097 S12: -0.3760 S13: -0.1077 REMARK 3 S21: 0.9447 S22: -0.1459 S23: -0.0419 REMARK 3 S31: -0.5372 S32: 0.2089 S33: 0.0362 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 172 A 231 REMARK 3 ORIGIN FOR THE GROUP (A): 38.6699 60.1121 64.6461 REMARK 3 T TENSOR REMARK 3 T11: 0.0965 T22: 0.0696 REMARK 3 T33: 0.0263 T12: 0.0008 REMARK 3 T13: 0.0268 T23: 0.0236 REMARK 3 L TENSOR REMARK 3 L11: 1.0213 L22: 1.0571 REMARK 3 L33: 7.4852 L12: 0.1297 REMARK 3 L13: -1.9133 L23: -0.5585 REMARK 3 S TENSOR REMARK 3 S11: 0.2352 S12: 0.0102 S13: 0.0483 REMARK 3 S21: 0.1450 S22: -0.1154 S23: 0.0821 REMARK 3 S31: -0.6053 S32: -0.0723 S33: -0.1198 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 232 A 243 REMARK 3 ORIGIN FOR THE GROUP (A): 32.6378 50.1779 55.6193 REMARK 3 T TENSOR REMARK 3 T11: 0.0915 T22: 0.3172 REMARK 3 T33: 0.4052 T12: 0.0150 REMARK 3 T13: -0.0632 T23: -0.0488 REMARK 3 L TENSOR REMARK 3 L11: 17.3121 L22: 17.9516 REMARK 3 L33: 13.6765 L12: -7.6484 REMARK 3 L13: -7.5834 L23: 5.9799 REMARK 3 S TENSOR REMARK 3 S11: 0.3044 S12: 1.0806 S13: -1.8929 REMARK 3 S21: -0.1466 S22: -0.5700 S23: 2.2051 REMARK 3 S31: 0.3407 S32: -1.1780 S33: 0.2656 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3KY7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-DEC-09. REMARK 100 THE DEPOSITION ID IS D_1000056595. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : BE LENSES/DIAMOND LAUE MONO REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14553 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.7800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.54200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7.6 MG/ML PROTEIN MIXED AT 1:1 V/V REMARK 280 WITH 1.4 M NA MALONATE PH 7.0, 0.1 M BIS-TRIS PROPANE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+1/4,X+3/4,-Z+3/4 REMARK 290 14555 -Y+1/4,-X+1/4,-Z+1/4 REMARK 290 15555 Y+3/4,-X+3/4,Z+1/4 REMARK 290 16555 -Y+3/4,X+1/4,Z+3/4 REMARK 290 17555 X+1/4,Z+3/4,-Y+3/4 REMARK 290 18555 -X+3/4,Z+1/4,Y+3/4 REMARK 290 19555 -X+1/4,-Z+1/4,-Y+1/4 REMARK 290 20555 X+3/4,-Z+3/4,Y+1/4 REMARK 290 21555 Z+1/4,Y+3/4,-X+3/4 REMARK 290 22555 Z+3/4,-Y+3/4,X+1/4 REMARK 290 23555 -Z+3/4,Y+1/4,X+3/4 REMARK 290 24555 -Z+1/4,-Y+1/4,-X+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 62.58800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.58800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.58800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.58800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 62.58800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 62.58800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 62.58800 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 62.58800 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 62.58800 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 62.58800 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 62.58800 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 62.58800 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 62.58800 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 62.58800 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 62.58800 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 62.58800 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 62.58800 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 62.58800 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 31.29400 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 93.88200 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 93.88200 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 31.29400 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 31.29400 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 31.29400 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 93.88200 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 93.88200 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 31.29400 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 93.88200 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 31.29400 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 93.88200 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 31.29400 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 93.88200 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 93.88200 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 93.88200 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 31.29400 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 93.88200 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 31.29400 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 31.29400 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 31.29400 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 93.88200 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 93.88200 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 31.29400 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 31.29400 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 93.88200 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 93.88200 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 93.88200 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 93.88200 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 31.29400 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 93.88200 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 31.29400 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 93.88200 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 31.29400 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 31.29400 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 31.29400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 93.88200 REMARK 350 BIOMT2 2 0.000000 0.000000 1.000000 31.29400 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 -31.29400 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 GLY A -14 REMARK 465 VAL A -13 REMARK 465 ASP A -12 REMARK 465 LEU A -11 REMARK 465 GLY A -10 REMARK 465 THR A -9 REMARK 465 GLU A -8 REMARK 465 ASN A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 PHE A -4 REMARK 465 GLN A -3 REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 ILE A 43 REMARK 465 VAL A 157 REMARK 465 LEU A 158 REMARK 465 GLY A 159 REMARK 465 ASN A 160 REMARK 465 GLU A 161 REMARK 465 GLN A 162 REMARK 465 SER A 163 REMARK 465 HIS A 164 REMARK 465 GLN A 165 REMARK 465 ASP A 166 REMARK 465 ASP A 167 REMARK 465 SER A 168 REMARK 465 PHE A 169 REMARK 465 LYS A 244 REMARK 465 GLY A 245 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 79 CB - CA - C ANGL. DEV. = -17.7 DEGREES REMARK 500 ILE A 154 CB - CA - C ANGL. DEV. = 16.7 DEGREES REMARK 500 PRO A 155 C - N - CD ANGL. DEV. = -30.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 18 -71.41 -94.17 REMARK 500 ILE A 21 37.82 -68.84 REMARK 500 ASN A 29 17.88 46.62 REMARK 500 GLN A 79 7.33 103.43 REMARK 500 ARG A 152 0.53 -63.46 REMARK 500 ILE A 154 -174.54 -66.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP90258 RELATED DB: TARGETDB DBREF 3KY7 A 1 245 UNP Q6GHJ5 TRMD_STAAR 1 245 SEQADV 3KY7 MET A -23 UNP Q6GHJ5 EXPRESSION TAG SEQADV 3KY7 HIS A -22 UNP Q6GHJ5 EXPRESSION TAG SEQADV 3KY7 HIS A -21 UNP Q6GHJ5 EXPRESSION TAG SEQADV 3KY7 HIS A -20 UNP Q6GHJ5 EXPRESSION TAG SEQADV 3KY7 HIS A -19 UNP Q6GHJ5 EXPRESSION TAG SEQADV 3KY7 HIS A -18 UNP Q6GHJ5 EXPRESSION TAG SEQADV 3KY7 HIS A -17 UNP Q6GHJ5 EXPRESSION TAG SEQADV 3KY7 SER A -16 UNP Q6GHJ5 EXPRESSION TAG SEQADV 3KY7 SER A -15 UNP Q6GHJ5 EXPRESSION TAG SEQADV 3KY7 GLY A -14 UNP Q6GHJ5 EXPRESSION TAG SEQADV 3KY7 VAL A -13 UNP Q6GHJ5 EXPRESSION TAG SEQADV 3KY7 ASP A -12 UNP Q6GHJ5 EXPRESSION TAG SEQADV 3KY7 LEU A -11 UNP Q6GHJ5 EXPRESSION TAG SEQADV 3KY7 GLY A -10 UNP Q6GHJ5 EXPRESSION TAG SEQADV 3KY7 THR A -9 UNP Q6GHJ5 EXPRESSION TAG SEQADV 3KY7 GLU A -8 UNP Q6GHJ5 EXPRESSION TAG SEQADV 3KY7 ASN A -7 UNP Q6GHJ5 EXPRESSION TAG SEQADV 3KY7 LEU A -6 UNP Q6GHJ5 EXPRESSION TAG SEQADV 3KY7 TYR A -5 UNP Q6GHJ5 EXPRESSION TAG SEQADV 3KY7 PHE A -4 UNP Q6GHJ5 EXPRESSION TAG SEQADV 3KY7 GLN A -3 UNP Q6GHJ5 EXPRESSION TAG SEQADV 3KY7 SER A -2 UNP Q6GHJ5 EXPRESSION TAG SEQADV 3KY7 ASN A -1 UNP Q6GHJ5 EXPRESSION TAG SEQADV 3KY7 ALA A 0 UNP Q6GHJ5 EXPRESSION TAG SEQRES 1 A 269 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 269 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA MET LYS SEQRES 3 A 269 ILE ASP TYR LEU THR LEU PHE PRO GLU MET PHE ASP GLY SEQRES 4 A 269 VAL LEU ASN HIS SER ILE MET LYS ARG ALA GLN GLU ASN SEQRES 5 A 269 ASN LYS LEU GLN ILE ASN THR VAL ASN PHE ARG ASP TYR SEQRES 6 A 269 ALA ILE ASN LYS HIS ASN GLN VAL ASP ASP TYR PRO TYR SEQRES 7 A 269 GLY GLY GLY GLN GLY MET VAL LEU LYS PRO GLU PRO VAL SEQRES 8 A 269 PHE ASN ALA MET GLU ASP LEU ASP VAL THR GLU GLN ALA SEQRES 9 A 269 ARG VAL ILE LEU MET OCS PRO GLN GLY GLU PRO PHE SER SEQRES 10 A 269 HIS GLN LYS ALA VAL GLU LEU SER LYS ALA ASP HIS ILE SEQRES 11 A 269 VAL PHE ILE CYS GLY HIS TYR GLU GLY TYR ASP GLU ARG SEQRES 12 A 269 ILE ARG THR HIS LEU VAL THR ASP GLU ILE SER MET GLY SEQRES 13 A 269 ASP TYR VAL LEU THR GLY GLY GLU LEU PRO ALA MET THR SEQRES 14 A 269 MET THR ASP ALA ILE VAL ARG LEU ILE PRO GLY VAL LEU SEQRES 15 A 269 GLY ASN GLU GLN SER HIS GLN ASP ASP SER PHE SER ASP SEQRES 16 A 269 GLY LEU LEU GLU PHE PRO GLN TYR THR ARG PRO ARG GLU SEQRES 17 A 269 PHE LYS GLY LEU THR VAL PRO ASP VAL LEU LEU SER GLY SEQRES 18 A 269 ASN HIS ALA ASN ILE ASP ALA TRP ARG HIS GLU GLN LYS SEQRES 19 A 269 LEU ILE ARG THR TYR ASN LYS ARG PRO ASP LEU ILE GLU SEQRES 20 A 269 LYS TYR PRO LEU THR ASN ALA ASP LYS GLN ILE LEU GLU SEQRES 21 A 269 ARG TYR LYS ILE GLY LEU LYS LYS GLY MODRES 3KY7 OCS A 86 CYS CYSTEINESULFONIC ACID HET OCS A 86 9 HETNAM OCS CYSTEINESULFONIC ACID FORMUL 1 OCS C3 H7 N O5 S FORMUL 2 HOH *83(H2 O) HELIX 1 1 PHE A 9 MET A 12 5 4 HELIX 2 2 PHE A 13 SER A 20 1 8 HELIX 3 3 MET A 22 ASN A 28 1 7 HELIX 4 4 ARG A 39 ALA A 42 5 4 HELIX 5 5 LYS A 63 LEU A 74 1 12 HELIX 6 6 SER A 93 SER A 101 1 9 HELIX 7 7 ASP A 117 LEU A 124 1 8 HELIX 8 8 GLY A 139 ARG A 152 1 14 HELIX 9 9 PRO A 191 SER A 196 5 6 HELIX 10 10 ASN A 198 ARG A 218 1 21 HELIX 11 11 ARG A 218 LYS A 224 1 7 HELIX 12 12 THR A 228 LYS A 243 1 16 SHEET 1 A 6 GLN A 32 ASN A 37 0 SHEET 2 A 6 LYS A 2 THR A 7 1 N ILE A 3 O GLN A 32 SHEET 3 A 6 HIS A 105 ILE A 109 1 O ILE A 106 N ASP A 4 SHEET 4 A 6 ARG A 81 MET A 85 1 N ARG A 81 O VAL A 107 SHEET 5 A 6 ASP A 127 SER A 130 1 O ILE A 129 N LEU A 84 SHEET 6 A 6 GLU A 90 PRO A 91 1 N GLU A 90 O GLU A 128 SHEET 1 B 2 ASP A 50 ASP A 51 0 SHEET 2 B 2 VAL A 61 LEU A 62 -1 O VAL A 61 N ASP A 51 SHEET 1 C 2 GLU A 184 PHE A 185 0 SHEET 2 C 2 LEU A 188 THR A 189 -1 O LEU A 188 N PHE A 185 LINK C MET A 85 N OCS A 86 1555 1555 1.32 LINK C OCS A 86 N PRO A 87 1555 1555 1.33 CISPEP 1 ARG A 181 PRO A 182 0 -1.09 CRYST1 125.176 125.176 125.176 90.00 90.00 90.00 P 43 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007989 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007989 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007989 0.00000