HEADER NUCLEIC ACID BINDING PROTEIN/DNA/RNA 06-DEC-09 3KYL TITLE STRUCTURE OF THE CATALYTIC SUBUNIT OF TELOMERASE BOUND TO ITS RNA TITLE 2 TEMPLATE AND TELOMERIC DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: TELOMERASE REVERSE TRANSCRIPTASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA/RNA (5'-R(*CP*UP*GP*AP*CP*CP*UP*GP*AP*C)- COMPND 7 D(P*TP*TP*CP*GP*GP*TP*CP*AP*GP*GP*TP*CP*AP*G)-3'); COMPND 8 CHAIN: E; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRIBOLIUM CASTANEUM; SOURCE 3 ORGANISM_COMMON: RUST-RED FLOUR BEETLE; SOURCE 4 ORGANISM_TAXID: 7070; SOURCE 5 GENE: TERT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETA (PLYSS); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET28B; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES KEYWDS REVERSE TRANSCRIPTASE, PROTEIN-RNA-DNA COMPLEX, TELOMERASE, RNA- KEYWDS 2 DIRECTED DNA POLYMERASE, NUCLEIC ACID BINDING PROTEIN-DNA-RNA KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.SKORDALAKES REVDAT 6 21-FEB-24 3KYL 1 REMARK LINK REVDAT 5 17-JUL-19 3KYL 1 REMARK REVDAT 4 01-NOV-17 3KYL 1 REMARK REVDAT 3 22-FEB-12 3KYL 1 JRNL REVDAT 2 13-JUL-11 3KYL 1 VERSN REVDAT 1 31-MAR-10 3KYL 0 JRNL AUTH M.MITCHELL,A.GILLIS,M.FUTAHASHI,H.FUJIWARA,E.SKORDALAKES JRNL TITL STRUCTURAL BASIS FOR TELOMERASE CATALYTIC SUBUNIT TERT JRNL TITL 2 BINDING TO RNA TEMPLATE AND TELOMERIC DNA. JRNL REF NAT.STRUCT.MOL.BIOL. V. 17 513 2010 JRNL REFN ISSN 1545-9993 JRNL PMID 20357774 JRNL DOI 10.1038/NSMB.1777 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 19815 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.245 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1030 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1385 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.2970 REMARK 3 BIN FREE R VALUE SET COUNT : 78 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4983 REMARK 3 NUCLEIC ACID ATOMS : 496 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 55 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.24000 REMARK 3 B22 (A**2) : -1.50000 REMARK 3 B33 (A**2) : -1.90000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.05000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.427 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.358 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 38.826 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.893 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.834 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5669 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7752 ; 0.833 ; 2.072 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 595 ; 5.516 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 235 ;35.230 ;22.979 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 961 ;17.548 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;12.517 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 852 ; 0.062 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4045 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2462 ; 0.192 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3788 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 151 ; 0.152 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 63 ; 0.145 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.081 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3059 ; 0.375 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4878 ; 0.667 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3106 ; 0.575 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2874 ; 0.940 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 155 REMARK 3 ORIGIN FOR THE GROUP (A): -11.5963 -2.9145 32.4856 REMARK 3 T TENSOR REMARK 3 T11: -0.1191 T22: 0.0316 REMARK 3 T33: 0.0848 T12: 0.0231 REMARK 3 T13: 0.0325 T23: 0.0394 REMARK 3 L TENSOR REMARK 3 L11: 1.3159 L22: 0.0857 REMARK 3 L33: 0.9109 L12: 0.2233 REMARK 3 L13: -0.2742 L23: 0.1554 REMARK 3 S TENSOR REMARK 3 S11: 0.0583 S12: 0.1236 S13: -0.0501 REMARK 3 S21: -0.0459 S22: -0.0505 S23: 0.1713 REMARK 3 S31: -0.0300 S32: -0.2509 S33: -0.0078 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 156 A 403 REMARK 3 ORIGIN FOR THE GROUP (A): 24.8546 -11.5411 10.9584 REMARK 3 T TENSOR REMARK 3 T11: -0.0596 T22: 0.0233 REMARK 3 T33: -0.0213 T12: 0.0219 REMARK 3 T13: -0.0200 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.4797 L22: 0.6517 REMARK 3 L33: 0.4640 L12: 0.3862 REMARK 3 L13: -0.0116 L23: 0.0880 REMARK 3 S TENSOR REMARK 3 S11: 0.0046 S12: 0.0517 S13: 0.0200 REMARK 3 S21: -0.0061 S22: 0.0053 S23: 0.0459 REMARK 3 S31: 0.0328 S32: -0.0489 S33: -0.0100 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 404 A 596 REMARK 3 ORIGIN FOR THE GROUP (A): 21.4658 8.7064 38.2969 REMARK 3 T TENSOR REMARK 3 T11: -0.0241 T22: -0.0136 REMARK 3 T33: -0.0311 T12: 0.0140 REMARK 3 T13: -0.0099 T23: 0.0141 REMARK 3 L TENSOR REMARK 3 L11: 0.9420 L22: 0.3395 REMARK 3 L33: 0.6515 L12: 0.2343 REMARK 3 L13: -0.0424 L23: 0.1150 REMARK 3 S TENSOR REMARK 3 S11: 0.0006 S12: 0.0086 S13: -0.0074 REMARK 3 S21: 0.0350 S22: 0.0027 S23: 0.0248 REMARK 3 S31: -0.0605 S32: -0.0222 S33: -0.0033 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 23 REMARK 3 ORIGIN FOR THE GROUP (A): 21.8257 -14.2904 34.0969 REMARK 3 T TENSOR REMARK 3 T11: -0.0086 T22: 0.0465 REMARK 3 T33: 0.0155 T12: 0.0087 REMARK 3 T13: -0.0666 T23: 0.0098 REMARK 3 L TENSOR REMARK 3 L11: 0.1080 L22: 1.1593 REMARK 3 L33: 0.1251 L12: 0.2070 REMARK 3 L13: -0.0566 L23: 0.1615 REMARK 3 S TENSOR REMARK 3 S11: -0.0138 S12: 0.0557 S13: -0.0119 REMARK 3 S21: -0.0708 S22: 0.0234 S23: 0.0904 REMARK 3 S31: 0.0110 S32: -0.0261 S33: -0.0096 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : W 1 W 55 REMARK 3 ORIGIN FOR THE GROUP (A): 23.2010 -5.0425 26.3125 REMARK 3 T TENSOR REMARK 3 T11: -0.0996 T22: -0.0047 REMARK 3 T33: 0.0243 T12: 0.0122 REMARK 3 T13: -0.0651 T23: 0.0144 REMARK 3 L TENSOR REMARK 3 L11: 0.1520 L22: 0.2335 REMARK 3 L33: 0.1876 L12: 0.0714 REMARK 3 L13: 0.0007 L23: 0.0530 REMARK 3 S TENSOR REMARK 3 S11: -0.0112 S12: 0.0189 S13: -0.0205 REMARK 3 S21: -0.0285 S22: 0.0379 S23: 0.0178 REMARK 3 S31: -0.0420 S32: -0.0069 S33: -0.0267 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3KYL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-DEC-09. REMARK 100 THE DEPOSITION ID IS D_1000056609. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 175 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97880 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19815 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 25.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.45800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES 7.5, 10% PEG 4K, 0.2M KCL, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.39100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG E 14 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT E 16 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DC E 17 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DG E 19 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DT E 21 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DC E 22 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DG E 24 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 18 -135.73 -114.37 REMARK 500 SER A 25 21.35 -69.99 REMARK 500 HIS A 40 78.10 78.97 REMARK 500 VAL A 46 85.13 50.04 REMARK 500 THR A 64 44.41 -90.37 REMARK 500 HIS A 92 -28.03 -143.91 REMARK 500 ASN A 105 28.70 -76.04 REMARK 500 GLU A 107 120.73 -35.69 REMARK 500 ILE A 126 -58.95 -127.46 REMARK 500 MET A 168 -110.62 -75.99 REMARK 500 LYS A 169 1.64 -165.84 REMARK 500 GLN A 175 87.33 54.10 REMARK 500 ASP A 176 -126.93 -159.62 REMARK 500 GLU A 177 -35.67 53.80 REMARK 500 LYS A 179 93.57 28.29 REMARK 500 LYS A 189 -120.98 -117.52 REMARK 500 GLN A 190 -76.72 -85.78 REMARK 500 PRO A 201 76.60 -67.07 REMARK 500 ALA A 204 -158.38 55.24 REMARK 500 ARG A 205 -42.79 3.15 REMARK 500 THR A 226 99.48 -65.77 REMARK 500 SER A 227 45.15 -87.65 REMARK 500 SER A 229 -48.82 176.41 REMARK 500 LEU A 230 -18.80 100.53 REMARK 500 ASP A 254 80.86 22.20 REMARK 500 LEU A 276 109.72 -160.68 REMARK 500 ASN A 290 58.73 -118.49 REMARK 500 ARG A 297 -22.23 68.06 REMARK 500 THR A 341 -95.48 -87.57 REMARK 500 VAL A 342 -77.39 -111.97 REMARK 500 GLU A 412 96.75 -68.00 REMARK 500 PHE A 448 50.35 -115.42 REMARK 500 SER A 488 -46.96 -144.48 REMARK 500 ASN A 492 -107.86 -71.49 REMARK 500 PHE A 494 40.25 -97.36 REMARK 500 TYR A 519 34.23 -90.45 REMARK 500 ARG A 525 -62.82 -109.27 REMARK 500 LYS A 526 123.38 -172.47 REMARK 500 ILE A 550 -38.94 -133.98 REMARK 500 ALA A 594 97.07 -40.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 597 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 251 OD1 REMARK 620 2 ASP A 343 OD2 101.9 REMARK 620 3 ASP A 344 OD2 108.6 75.7 REMARK 620 4 ASP A 344 OD1 64.4 90.9 44.6 REMARK 620 5 DG E 24 OP1 103.3 68.4 135.9 153.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 597 DBREF 3KYL A 1 596 UNP Q0QHL8 Q0QHL8_TRICA 1 596 DBREF 3KYL E 1 24 PDB 3KYL 3KYL 1 24 SEQRES 1 A 596 MET VAL HIS TYR TYR ARG LEU SER LEU LYS SER ARG GLN SEQRES 2 A 596 LYS ALA PRO LYS ILE VAL ASN SER LYS TYR ASN SER ILE SEQRES 3 A 596 LEU ASN ILE ALA LEU LYS ASN PHE ARG LEU CYS LYS LYS SEQRES 4 A 596 HIS LYS THR LYS LYS PRO VAL GLN ILE LEU ALA LEU LEU SEQRES 5 A 596 GLN GLU ILE ILE PRO LYS SER TYR PHE GLY THR THR THR SEQRES 6 A 596 ASN LEU LYS ARG PHE TYR LYS VAL VAL GLU LYS ILE LEU SEQRES 7 A 596 THR GLN SER SER PHE GLU CYS ILE HIS LEU SER VAL LEU SEQRES 8 A 596 HIS LYS CYS TYR ASP TYR ASP ALA ILE PRO TRP LEU GLN SEQRES 9 A 596 ASN VAL GLU PRO ASN LEU ARG PRO LYS LEU LEU LEU LYS SEQRES 10 A 596 HIS ASN LEU PHE LEU LEU ASP ASN ILE VAL LYS PRO ILE SEQRES 11 A 596 ILE ALA PHE TYR TYR LYS PRO ILE LYS THR LEU ASN GLY SEQRES 12 A 596 HIS GLU ILE LYS PHE ILE ARG LYS GLU GLU TYR ILE SER SEQRES 13 A 596 PHE GLU SER LYS VAL PHE HIS LYS LEU LYS LYS MET LYS SEQRES 14 A 596 TYR LEU VAL GLU VAL GLN ASP GLU VAL LYS PRO ARG GLY SEQRES 15 A 596 VAL LEU ASN ILE ILE PRO LYS GLN ASP ASN PHE ARG ALA SEQRES 16 A 596 ILE VAL SER ILE PHE PRO ASP SER ALA ARG LYS PRO PHE SEQRES 17 A 596 PHE LYS LEU LEU THR SER LYS ILE TYR LYS VAL LEU GLU SEQRES 18 A 596 GLU LYS TYR LYS THR SER GLY SER LEU TYR THR CYS TRP SEQRES 19 A 596 SER GLU PHE THR GLN LYS THR GLN GLY GLN ILE TYR GLY SEQRES 20 A 596 ILE LYS VAL ASP ILE ARG ASP ALA TYR GLY ASN VAL LYS SEQRES 21 A 596 ILE PRO VAL LEU CYS LYS LEU ILE GLN SER ILE PRO THR SEQRES 22 A 596 HIS LEU LEU ASP SER GLU LYS LYS ASN PHE ILE VAL ASP SEQRES 23 A 596 HIS ILE SER ASN GLN PHE VAL ALA PHE ARG ARG LYS ILE SEQRES 24 A 596 TYR LYS TRP ASN HIS GLY LEU LEU GLN GLY ASP PRO LEU SEQRES 25 A 596 SER GLY CYS LEU CYS GLU LEU TYR MET ALA PHE MET ASP SEQRES 26 A 596 ARG LEU TYR PHE SER ASN LEU ASP LYS ASP ALA PHE ILE SEQRES 27 A 596 HIS ARG THR VAL ASP ASP TYR PHE PHE CYS SER PRO HIS SEQRES 28 A 596 PRO HIS LYS VAL TYR ASP PHE GLU LEU LEU ILE LYS GLY SEQRES 29 A 596 VAL TYR GLN VAL ASN PRO THR LYS THR ARG THR ASN LEU SEQRES 30 A 596 PRO THR HIS ARG HIS PRO GLN ASP GLU ILE PRO TYR CYS SEQRES 31 A 596 GLY LYS ILE PHE ASN LEU THR THR ARG GLN VAL ARG THR SEQRES 32 A 596 LEU TYR LYS LEU PRO PRO ASN TYR GLU ILE ARG HIS LYS SEQRES 33 A 596 PHE LYS LEU TRP ASN PHE ASN ASN GLN ILE SER ASP ASP SEQRES 34 A 596 ASN PRO ALA ARG PHE LEU GLN LYS ALA MET ASP PHE PRO SEQRES 35 A 596 PHE ILE CYS ASN SER PHE THR LYS PHE GLU PHE ASN THR SEQRES 36 A 596 VAL PHE ASN ASP GLN ARG THR VAL PHE ALA ASN PHE TYR SEQRES 37 A 596 ASP ALA MET ILE CYS VAL ALA TYR LYS PHE ASP ALA ALA SEQRES 38 A 596 MET MET ALA LEU ARG THR SER PHE LEU VAL ASN ASP PHE SEQRES 39 A 596 GLY PHE ILE TRP LEU VAL LEU SER SER THR VAL ARG ALA SEQRES 40 A 596 TYR ALA SER ARG ALA PHE LYS LYS ILE VAL THR TYR LYS SEQRES 41 A 596 GLY GLY LYS TYR ARG LYS VAL THR PHE GLN CYS LEU LYS SEQRES 42 A 596 SER ILE ALA TRP ARG ALA PHE LEU ALA VAL LEU LYS ARG SEQRES 43 A 596 ARG THR GLU ILE TYR LYS GLY LEU ILE ASP ARG ILE LYS SEQRES 44 A 596 SER ARG GLU LYS LEU THR MET LYS PHE HIS ASP GLY GLU SEQRES 45 A 596 VAL ASP ALA SER TYR PHE CYS LYS LEU PRO GLU LYS PHE SEQRES 46 A 596 ARG PHE VAL LYS ILE ASN ARG LYS ALA SER ILE SEQRES 1 E 24 C U G A C C U G A C DT DT DC SEQRES 2 E 24 DG DG DT DC DA DG DG DT DC DA DG HET MG A 597 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG MG 2+ FORMUL 4 HOH *55(H2 O) HELIX 1 1 ILE A 26 LYS A 38 1 13 HELIX 2 2 GLN A 47 ILE A 56 1 10 HELIX 3 3 PRO A 57 GLY A 62 1 6 HELIX 4 4 THR A 65 LEU A 78 1 14 HELIX 5 5 SER A 89 HIS A 92 5 4 HELIX 6 6 ILE A 100 GLN A 104 5 5 HELIX 7 7 LEU A 110 ILE A 126 1 17 HELIX 8 8 ILE A 126 TYR A 134 1 9 HELIX 9 9 LYS A 151 MET A 168 1 18 HELIX 10 10 ARG A 205 TYR A 224 1 20 HELIX 11 11 TYR A 231 THR A 241 1 11 HELIX 12 12 LYS A 260 GLN A 269 1 10 HELIX 13 13 ASP A 277 ASN A 290 1 14 HELIX 14 14 LEU A 312 PHE A 329 1 18 HELIX 15 15 HIS A 351 TYR A 366 1 16 HELIX 16 16 GLU A 412 LYS A 416 5 5 HELIX 17 17 ASN A 430 MET A 439 1 10 HELIX 18 18 ASP A 440 PHE A 448 5 9 HELIX 19 19 THR A 449 ASN A 454 1 6 HELIX 20 20 ASP A 459 THR A 487 1 29 HELIX 21 21 PHE A 494 TYR A 519 1 26 HELIX 22 22 THR A 528 LYS A 545 1 18 HELIX 23 23 ARG A 547 GLU A 562 1 16 HELIX 24 24 ASP A 574 LYS A 580 5 7 HELIX 25 25 PRO A 582 ARG A 586 5 5 SHEET 1 A 2 TYR A 4 ARG A 6 0 SHEET 2 A 2 CYS A 85 HIS A 87 -1 O ILE A 86 N TYR A 5 SHEET 1 B 2 TYR A 135 LYS A 139 0 SHEET 2 B 2 ILE A 146 ARG A 150 -1 O ILE A 149 N LYS A 136 SHEET 1 C 5 LEU A 171 GLU A 173 0 SHEET 2 C 5 ILE A 299 TRP A 302 -1 O LYS A 301 N VAL A 172 SHEET 3 C 5 GLN A 291 ALA A 294 -1 N VAL A 293 O TYR A 300 SHEET 4 C 5 GLY A 182 PRO A 188 1 N LEU A 184 O ALA A 294 SHEET 5 C 5 PHE A 193 ILE A 199 -1 O SER A 198 N VAL A 183 SHEET 1 D 4 PHE A 337 ARG A 340 0 SHEET 2 D 4 ASP A 344 SER A 349 -1 O CYS A 348 N PHE A 337 SHEET 3 D 4 TYR A 246 ILE A 252 -1 N TYR A 246 O SER A 349 SHEET 4 D 4 VAL A 368 THR A 375 -1 O ASN A 369 N ASP A 251 SHEET 1 E 3 GLU A 386 TYR A 389 0 SHEET 2 E 3 LYS A 392 ASN A 395 -1 O PHE A 394 N ILE A 387 SHEET 3 E 3 VAL A 401 THR A 403 -1 O ARG A 402 N ILE A 393 LINK OD1 ASP A 251 MG MG A 597 1555 1555 2.32 LINK OD2 ASP A 343 MG MG A 597 1555 1555 3.00 LINK OD2 ASP A 344 MG MG A 597 1555 1555 2.85 LINK OD1 ASP A 344 MG MG A 597 1555 1555 2.93 LINK MG MG A 597 OP1 DG E 24 1555 1555 2.26 CISPEP 1 LYS A 41 THR A 42 0 -17.35 CISPEP 2 LYS A 44 PRO A 45 0 -1.48 CISPEP 3 GLN A 175 ASP A 176 0 -3.41 CISPEP 4 SER A 203 ALA A 204 0 -8.51 SITE 1 AC1 5 ASP A 251 ASP A 343 ASP A 344 DA E 23 SITE 2 AC1 5 DG E 24 CRYST1 77.231 52.782 101.609 90.00 101.90 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012948 0.000000 0.002729 0.00000 SCALE2 0.000000 0.018946 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010058 0.00000