HEADER TRANSPORT PROTEIN 08-DEC-09 3KZA TITLE CRYSTAL STRUCTURE OF GYUBA, A PATCHED CHIMERA OF B-LACTGLOBULIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTOGLOBULIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BETA-LG-1, BETA-LACTOGLOBULIN I, BLGI; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: AN ARTIFICIAL CHIMERA PROTEIN OF BOS-TAURAS AND EQUINE COMPND 7 B-LACTOGLOBULIN. THE RESIDUES 1-16, 28-41, 50, 51, 63-65, 74-49, 87, COMPND 8 88, 96-101, 109-116, 125-129, 139-144, 154-162 ARE FROM EQUINE, THE COMPND 9 RESIDUES 17-27, 42-49, 52-62, 66-73, 80-86, 89-95, 102-108, 117-124, COMPND 10 130-138, 145-153 ARE FROM BOS-TAURAS. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EQUUS CABALLUS, BOS TAURUS; SOURCE 3 ORGANISM_COMMON: EQUINE, BOVINE; SOURCE 4 ORGANISM_TAXID: 9796, 9913; SOURCE 5 GENE: LGB1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3C KEYWDS ARTIFICIAL PROTEIN, CHIMERA PROTEIN, DISULFIDE BOND, MILK PROTEIN, KEYWDS 2 RETINOL-BINDING, SECRETED, TRANSPORT, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.TSUGE,H.OHTOMO,H.UTSUNOMIYA,T.KONUMA,M.IKEGUCHI REVDAT 4 10-NOV-21 3KZA 1 SEQADV REVDAT 3 23-AUG-17 3KZA 1 SOURCE REMARK REVDAT 2 09-NOV-11 3KZA 1 JRNL VERSN REVDAT 1 22-DEC-10 3KZA 0 JRNL AUTH H.OHTOMO,T.KONUMA,H.UTSUNOIYA,H.TSUGE,M.IKEGUCHI JRNL TITL STRUCTURE AND STABILITY OF GYUBA, A PATCHED CHIMERA OF JRNL TITL 2 B-LACTOGLOBULIN JRNL REF PROTEIN SCI. V. 20 1867 2011 JRNL REFN ISSN 0961-8368 JRNL PMID 21853497 JRNL DOI 10.1002/PRO.720 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 26122 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1383 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1915 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 99 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2336 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.12000 REMARK 3 B22 (A**2) : 1.12000 REMARK 3 B33 (A**2) : -1.68000 REMARK 3 B12 (A**2) : 0.56000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.193 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.182 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.121 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.160 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2376 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3222 ; 1.990 ; 2.005 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 294 ; 6.739 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 104 ;34.748 ;26.538 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 442 ;18.722 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;13.135 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 378 ; 0.174 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1752 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1022 ; 0.244 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1593 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 199 ; 0.193 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 48 ; 0.308 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.249 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1559 ; 1.397 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2424 ; 2.237 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 947 ; 3.692 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 798 ; 5.488 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3KZA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-DEC-09. REMARK 100 THE DEPOSITION ID IS D_1000056634. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 277 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27566 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 59.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06600 REMARK 200 FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 9.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.31400 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0M AMMONIUM SULFATE, PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 101.07733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 50.53867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 75.80800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 25.26933 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 126.34667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 1 REMARK 465 ASN A 2 REMARK 465 TRP A 61 REMARK 465 GLU A 62 REMARK 465 ASN A 63 REMARK 465 LYS A 64 REMARK 465 GLY A 65 REMARK 465 CYS A 66 REMARK 465 GLU A 158 REMARK 465 ARG A 159 REMARK 465 CYS A 160 REMARK 465 ARG A 161 REMARK 465 ILE A 162 REMARK 465 THR B 1 REMARK 465 ASN B 2 REMARK 465 TRP B 61 REMARK 465 GLU B 62 REMARK 465 ASN B 63 REMARK 465 LYS B 64 REMARK 465 GLY B 65 REMARK 465 CYS B 66 REMARK 465 GLU B 158 REMARK 465 ARG B 159 REMARK 465 CYS B 160 REMARK 465 ARG B 161 REMARK 465 ILE B 162 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB THR B 154 O HOH B 222 1.84 REMARK 500 OG1 THR B 154 O HOH B 222 2.13 REMARK 500 O ASP A 33 O ASP B 33 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU B 74 OE2 GLU B 131 6554 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 59 CB GLN A 59 CG 0.177 REMARK 500 GLN A 59 CG GLN A 59 CD 0.146 REMARK 500 GLN B 59 CB GLN B 59 CG 0.196 REMARK 500 GLN B 59 CG GLN B 59 CD 0.155 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 40 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG A 40 NE - CZ - NH2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG B 40 NE - CZ - NH1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG B 40 NE - CZ - NH2 ANGL. DEV. = -7.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 96 148.32 -170.03 REMARK 500 TYR A 99 -44.90 74.93 REMARK 500 SER A 116 -16.60 -142.94 REMARK 500 TYR B 99 -44.40 75.55 REMARK 500 ASN B 101 -47.47 -131.43 REMARK 500 THR B 112 68.43 -151.40 REMARK 500 SER B 116 -13.20 -145.33 REMARK 500 GLN B 126 40.47 -81.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS IS AN ARTIFICIAL CHIMERA PROTEIN OF BOS-TAURAS AND EQUINE B- REMARK 999 LACTOGLOBULIN. DBREF 3KZA A 1 16 UNP P02758 LACB1_HORSE 19 34 DBREF 3KZA A 17 27 UNP P02754 LACB_BOVIN 33 43 DBREF 3KZA A 28 41 UNP P02758 LACB1_HORSE 46 59 DBREF 3KZA A 42 49 UNP P02754 LACB_BOVIN 58 65 DBREF 3KZA A 50 51 UNP P02758 LACB1_HORSE 68 69 DBREF 3KZA A 52 62 UNP P02754 LACB_BOVIN 68 78 DBREF 3KZA A 63 65 UNP P02758 LACB1_HORSE 81 83 DBREF 3KZA A 66 73 UNP P02754 LACB_BOVIN 82 89 DBREF 3KZA A 74 79 UNP P02758 LACB1_HORSE 92 97 DBREF 3KZA A 80 86 UNP P02754 LACB_BOVIN 96 102 DBREF 3KZA A 87 88 UNP P02758 LACB1_HORSE 105 106 DBREF 3KZA A 89 95 UNP P02754 LACB_BOVIN 105 111 DBREF 3KZA A 96 101 UNP P02758 LACB1_HORSE 114 119 DBREF 3KZA A 102 108 UNP P02754 LACB_BOVIN 118 124 DBREF 3KZA A 109 116 UNP P02758 LACB1_HORSE 127 134 DBREF 3KZA A 117 124 UNP P02754 LACB_BOVIN 133 140 DBREF 3KZA A 125 129 UNP P02758 LACB1_HORSE 143 147 DBREF 3KZA A 130 138 UNP P02754 LACB_BOVIN 146 154 DBREF 3KZA A 139 144 UNP P02758 LACB1_HORSE 156 161 DBREF 3KZA A 145 153 UNP P02754 LACB_BOVIN 161 169 DBREF 3KZA A 154 162 UNP P02758 LACB1_HORSE 172 180 DBREF 3KZA B 1 16 UNP P02758 LACB1_HORSE 19 34 DBREF 3KZA B 17 27 UNP P02754 LACB_BOVIN 33 43 DBREF 3KZA B 28 41 UNP P02758 LACB1_HORSE 46 59 DBREF 3KZA B 42 49 UNP P02754 LACB_BOVIN 58 65 DBREF 3KZA B 50 51 UNP P02758 LACB1_HORSE 68 69 DBREF 3KZA B 52 62 UNP P02754 LACB_BOVIN 68 78 DBREF 3KZA B 63 65 UNP P02758 LACB1_HORSE 81 83 DBREF 3KZA B 66 73 UNP P02754 LACB_BOVIN 82 89 DBREF 3KZA B 74 79 UNP P02758 LACB1_HORSE 92 97 DBREF 3KZA B 80 86 UNP P02754 LACB_BOVIN 96 102 DBREF 3KZA B 87 88 UNP P02758 LACB1_HORSE 105 106 DBREF 3KZA B 89 95 UNP P02754 LACB_BOVIN 105 111 DBREF 3KZA B 96 101 UNP P02758 LACB1_HORSE 114 119 DBREF 3KZA B 102 108 UNP P02754 LACB_BOVIN 118 124 DBREF 3KZA B 109 116 UNP P02758 LACB1_HORSE 127 134 DBREF 3KZA B 117 124 UNP P02754 LACB_BOVIN 133 140 DBREF 3KZA B 125 129 UNP P02758 LACB1_HORSE 143 147 DBREF 3KZA B 130 138 UNP P02754 LACB_BOVIN 146 154 DBREF 3KZA B 139 144 UNP P02758 LACB1_HORSE 156 161 DBREF 3KZA B 145 153 UNP P02754 LACB_BOVIN 161 169 DBREF 3KZA B 154 162 UNP P02758 LACB1_HORSE 172 180 SEQADV 3KZA GLU A 81 UNP P02754 VAL 97 ENGINEERED MUTATION SEQADV 3KZA ALA A 121 UNP P02754 CYS 137 ENGINEERED MUTATION SEQADV 3KZA GLU B 81 UNP P02754 VAL 97 ENGINEERED MUTATION SEQADV 3KZA ALA B 121 UNP P02754 CYS 137 ENGINEERED MUTATION SEQRES 1 A 162 THR ASN ILE PRO GLN THR MET GLN ASP LEU ASP LEU GLN SEQRES 2 A 162 GLU VAL ALA GLY THR TRP TYR SER LEU ALA MET ALA ALA SEQRES 3 A 162 SER ASP ILE SER LEU LEU ASP SER GLU SER ALA PRO LEU SEQRES 4 A 162 ARG VAL TYR VAL GLU GLU LEU LYS PRO THR PRO GLU GLY SEQRES 5 A 162 ASP LEU GLU ILE LEU LEU GLN LYS TRP GLU ASN LYS GLY SEQRES 6 A 162 CYS ALA GLN LYS LYS ILE ILE ALA GLU LYS THR GLU SER SEQRES 7 A 162 PRO ALA GLU PHE LYS ILE ASP ALA LEU ASP GLU ASN LYS SEQRES 8 A 162 VAL LEU VAL LEU ASP THR ASP TYR LYS ASN TYR LEU LEU SEQRES 9 A 162 PHE CYS MET GLU ASN ALA ALA THR PRO GLY GLN SER LEU SEQRES 10 A 162 ALA CYS GLN ALA LEU VAL ARG THR GLN MET VAL ASP ASP SEQRES 11 A 162 GLU ALA LEU GLU LYS PHE ASP LYS ALA LEU GLN PRO LEU SEQRES 12 A 162 PRO MET HIS ILE ARG LEU SER PHE ASN PRO THR ARG MET SEQRES 13 A 162 ALA GLU ARG CYS ARG ILE SEQRES 1 B 162 THR ASN ILE PRO GLN THR MET GLN ASP LEU ASP LEU GLN SEQRES 2 B 162 GLU VAL ALA GLY THR TRP TYR SER LEU ALA MET ALA ALA SEQRES 3 B 162 SER ASP ILE SER LEU LEU ASP SER GLU SER ALA PRO LEU SEQRES 4 B 162 ARG VAL TYR VAL GLU GLU LEU LYS PRO THR PRO GLU GLY SEQRES 5 B 162 ASP LEU GLU ILE LEU LEU GLN LYS TRP GLU ASN LYS GLY SEQRES 6 B 162 CYS ALA GLN LYS LYS ILE ILE ALA GLU LYS THR GLU SER SEQRES 7 B 162 PRO ALA GLU PHE LYS ILE ASP ALA LEU ASP GLU ASN LYS SEQRES 8 B 162 VAL LEU VAL LEU ASP THR ASP TYR LYS ASN TYR LEU LEU SEQRES 9 B 162 PHE CYS MET GLU ASN ALA ALA THR PRO GLY GLN SER LEU SEQRES 10 B 162 ALA CYS GLN ALA LEU VAL ARG THR GLN MET VAL ASP ASP SEQRES 11 B 162 GLU ALA LEU GLU LYS PHE ASP LYS ALA LEU GLN PRO LEU SEQRES 12 B 162 PRO MET HIS ILE ARG LEU SER PHE ASN PRO THR ARG MET SEQRES 13 B 162 ALA GLU ARG CYS ARG ILE FORMUL 3 HOH *240(H2 O) HELIX 1 1 ASP A 11 ALA A 16 5 6 HELIX 2 2 ASP A 28 LEU A 32 5 5 HELIX 3 3 THR A 112 SER A 116 5 5 HELIX 4 4 ASP A 129 GLN A 141 1 13 HELIX 5 5 ASP B 11 ALA B 16 5 6 HELIX 6 6 ASP B 28 LEU B 32 5 5 HELIX 7 7 THR B 112 SER B 116 5 5 HELIX 8 8 ASP B 129 GLN B 141 1 13 SHEET 1 A16 GLY A 17 THR A 18 0 SHEET 2 A16 TYR A 42 PRO A 48 -1 O LEU A 46 N GLY A 17 SHEET 3 A16 LEU A 54 GLN A 59 -1 O GLU A 55 N LYS A 47 SHEET 4 A16 LYS A 69 LYS A 75 -1 O ALA A 73 N LEU A 54 SHEET 5 A16 GLU A 81 ALA A 86 -1 O LYS A 83 N GLU A 74 SHEET 6 A16 GLU A 89 THR A 97 -1 O VAL A 92 N PHE A 82 SHEET 7 A16 TYR A 102 GLU A 108 -1 O LEU A 104 N ASP A 96 SHEET 8 A16 ALA A 118 VAL A 123 -1 O LEU A 122 N LEU A 103 SHEET 9 A16 TYR A 20 ALA A 26 -1 N ALA A 25 O CYS A 119 SHEET 10 A16 ILE A 147 SER A 150 -1 O LEU A 149 N MET A 24 SHEET 11 A16 ILE B 147 SER B 150 -1 O ARG B 148 N ARG A 148 SHEET 12 A16 TYR B 20 ALA B 26 -1 N MET B 24 O LEU B 149 SHEET 13 A16 ALA B 118 VAL B 123 -1 O CYS B 119 N ALA B 25 SHEET 14 A16 TYR B 102 GLU B 108 -1 N LEU B 103 O LEU B 122 SHEET 15 A16 GLU B 89 THR B 97 -1 N ASP B 96 O LEU B 104 SHEET 16 A16 GLU B 81 ALA B 86 -1 N PHE B 82 O VAL B 92 SHEET 1 B 4 GLY B 17 THR B 18 0 SHEET 2 B 4 TYR B 42 PRO B 48 -1 O LEU B 46 N GLY B 17 SHEET 3 B 4 LEU B 54 GLN B 59 -1 O GLU B 55 N LYS B 47 SHEET 4 B 4 LYS B 69 ALA B 73 -1 O ALA B 73 N LEU B 54 SSBOND 1 CYS A 106 CYS A 119 1555 1555 2.08 SSBOND 2 CYS B 106 CYS B 119 1555 1555 2.07 CRYST1 68.925 68.925 151.616 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014509 0.008377 0.000000 0.00000 SCALE2 0.000000 0.016753 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006596 0.00000