HEADER TRANSFERASE 08-DEC-09 3KZB TITLE CRYSTAL STRUCTURE OF XYLULOKINASE FROM CHROMOBACTERIUM VIOLACEUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: XYLULOKINASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.1.17; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHROMOBACTERIUM VIOLACEUM; SOURCE 3 ORGANISM_TAXID: 536; SOURCE 4 STRAIN: ATCC 12472; SOURCE 5 GENE: XYLB, CV_1862; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODEN+RIL STRATAGENE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BC-PSGX3(BC) KEYWDS XYLULOKINASE, CHROMOBACTERIUM VIOLACEUM, ADP, SGX, CARBOHYDRATE KEYWDS 2 KINASE, 11200B, KINASE, TRANSFERASE, STRUCTURAL GENOMICS, PSI-2, KEYWDS 3 PROTEIN STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR KEYWDS 4 STRUCTURAL GENOMICS, NYSGXRC EXPDTA X-RAY DIFFRACTION AUTHOR Z.ZHANG,S.K.BURLEY,S.SWAMINATHAN,NEW YORK SGX RESEARCH CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (NYSGXRC) REVDAT 6 22-NOV-23 3KZB 1 REMARK REVDAT 5 06-SEP-23 3KZB 1 REMARK REVDAT 4 10-FEB-21 3KZB 1 AUTHOR JRNL REMARK SEQADV REVDAT 4 2 1 LINK REVDAT 3 31-JAN-18 3KZB 1 REMARK REVDAT 2 16-NOV-11 3KZB 1 VERSN HETATM REVDAT 1 09-MAR-10 3KZB 0 JRNL AUTH Z.ZHANG,S.K.BURLEY,S.SWAMINATHAN JRNL TITL CRYSTAL STRUCTURE OF XYLULOKINASE FROM CHROMOBACTERIUM JRNL TITL 2 VIOLACEUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.110 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 15256 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 775 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.3930 - 4.9129 0.99 2604 123 0.1938 0.2440 REMARK 3 2 4.9129 - 3.9002 0.99 2434 140 0.1504 0.1823 REMARK 3 3 3.9002 - 3.4073 0.99 2418 125 0.1712 0.2537 REMARK 3 4 3.4073 - 3.0959 0.98 2393 127 0.2050 0.2923 REMARK 3 5 3.0959 - 2.8740 0.97 2335 136 0.2078 0.2907 REMARK 3 6 2.8740 - 2.7046 0.95 2297 124 0.2106 0.2737 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.28 REMARK 3 B_SOL : 3.64 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.98100 REMARK 3 B22 (A**2) : -3.76530 REMARK 3 B33 (A**2) : 4.74630 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3933 REMARK 3 ANGLE : 1.168 5364 REMARK 3 CHIRALITY : 0.073 601 REMARK 3 PLANARITY : 0.005 696 REMARK 3 DIHEDRAL : 16.714 1421 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3KZB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-DEC-09. REMARK 100 THE DEPOSITION ID IS D_1000056635. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15256 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.15000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3HZ6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH7.5, 25% PEG 3350, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 110K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 35.94650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 79.89950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.94650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 79.89950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 559 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -1 REMARK 465 PRO A 468 REMARK 465 ALA A 469 REMARK 465 LEU A 500 REMARK 465 ASP A 501 REMARK 465 GLU A 502 REMARK 465 GLY A 503 REMARK 465 HIS A 504 REMARK 465 HIS A 505 REMARK 465 HIS A 506 REMARK 465 HIS A 507 REMARK 465 HIS A 508 REMARK 465 HIS A 509 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 319 C - N - CA ANGL. DEV. = 9.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 103 35.98 -140.36 REMARK 500 LEU A 261 68.56 -106.82 REMARK 500 VAL A 281 44.40 -91.01 REMARK 500 THR A 283 104.65 -46.74 REMARK 500 ALA A 304 -114.07 -148.84 REMARK 500 PRO A 361 151.76 -49.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 1760 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HZ6 RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITHOUT XYLULOSE, PHOSPHATE, GLYCEROL,MALONATE ION REMARK 900 BOUND REMARK 900 RELATED ID: NYSGXRC-11200B RELATED DB: TARGETDB DBREF 3KZB A 2 501 UNP Q7NWW7 Q7NWW7_CHRVO 2 501 SEQADV 3KZB MSE A -1 UNP Q7NWW7 EXPRESSION TAG SEQADV 3KZB SER A 0 UNP Q7NWW7 EXPRESSION TAG SEQADV 3KZB LEU A 1 UNP Q7NWW7 EXPRESSION TAG SEQADV 3KZB GLU A 502 UNP Q7NWW7 EXPRESSION TAG SEQADV 3KZB GLY A 503 UNP Q7NWW7 EXPRESSION TAG SEQADV 3KZB HIS A 504 UNP Q7NWW7 EXPRESSION TAG SEQADV 3KZB HIS A 505 UNP Q7NWW7 EXPRESSION TAG SEQADV 3KZB HIS A 506 UNP Q7NWW7 EXPRESSION TAG SEQADV 3KZB HIS A 507 UNP Q7NWW7 EXPRESSION TAG SEQADV 3KZB HIS A 508 UNP Q7NWW7 EXPRESSION TAG SEQADV 3KZB HIS A 509 UNP Q7NWW7 EXPRESSION TAG SEQRES 1 A 511 MSE SER LEU ALA PHE TYR ILE ALA THR PHE ASP ILE GLY SEQRES 2 A 511 THR THR GLU VAL LYS ALA ALA LEU ALA ASP ARG ASP GLY SEQRES 3 A 511 GLY LEU HIS PHE GLN ARG SER ILE ALA LEU GLU THR TYR SEQRES 4 A 511 GLY ASP GLY ASN GLY PRO VAL GLU GLN ASP ALA GLY ASP SEQRES 5 A 511 TRP TYR ASP ALA VAL GLN ARG ILE ALA SER SER TRP TRP SEQRES 6 A 511 GLN SER GLY VAL ASP ALA ARG ARG VAL SER ALA ILE VAL SEQRES 7 A 511 LEU SER GLY GLN MSE GLN ASN PHE LEU PRO LEU ASP GLN SEQRES 8 A 511 ASP HIS GLU PRO LEU HIS ARG ALA VAL LEU TYR SER ASP SEQRES 9 A 511 LYS ARG PRO LEU LYS GLU ALA GLU GLU ILE ASN ALA ARG SEQRES 10 A 511 HIS GLY ALA ASP ASN LEU TRP SER ALA LEU GLU ASN PRO SEQRES 11 A 511 MSE THR ALA ALA SER ILE LEU PRO LYS LEU VAL PHE TRP SEQRES 12 A 511 ARG ALA SER PHE PRO GLN ALA PHE GLY ARG LEU ARG HIS SEQRES 13 A 511 VAL VAL LEU GLY ALA LYS ASP TYR VAL VAL LEU ARG LEU SEQRES 14 A 511 THR GLY ARG HIS ALA THR ASP ARG THR ASN ALA SER THR SEQRES 15 A 511 THR GLY LEU TYR ARG PRO LYS ASP ASP ALA TRP HIS VAL SEQRES 16 A 511 GLU LEU LEU ALA ASP TYR GLY PHE SER LEU ASP LEU MSE SEQRES 17 A 511 PRO ARG LEU LEU GLU PRO GLY GLU GLN VAL GLY GLY VAL SEQRES 18 A 511 SER ALA LEU ALA ALA ARG GLN THR GLY PHE VAL SER GLY SEQRES 19 A 511 THR PRO VAL LEU CYS GLY LEU GLY ASP ALA GLY ALA ALA SEQRES 20 A 511 THR LEU GLY VAL GLY VAL LEU ASP ASP GLU ASP ALA TYR SEQRES 21 A 511 LEU HIS LEU GLY THR THR GLY TRP LEU ALA ARG LEU THR SEQRES 22 A 511 GLN THR ASP PRO VAL GLY ASP MSE PRO VAL GLY THR ILE SEQRES 23 A 511 PHE ARG LEU ALA GLY ILE ILE ALA GLY LYS THR LEU GLN SEQRES 24 A 511 VAL ALA PRO VAL LEU ASN ALA GLY ASN ILE LEU GLN TRP SEQRES 25 A 511 ALA LEU THR LEU VAL GLY HIS ARG PRO GLY GLU ASP CYS SEQRES 26 A 511 ALA GLU TYR PHE HIS MSE ALA ALA ALA GLU VAL GLN GLY SEQRES 27 A 511 VAL THR VAL PRO ASP GLY LEU LEU PHE VAL PRO TYR LEU SEQRES 28 A 511 HIS ALA GLU ARG CYS PRO VAL GLU LEU PRO ALA PRO ARG SEQRES 29 A 511 GLY ALA LEU LEU GLY VAL THR GLY ALA THR THR ARG ALA SEQRES 30 A 511 GLN ILE LEU LEU ALA VAL LEU GLU GLY ALA ALA LEU SER SEQRES 31 A 511 LEU ARG TRP CYS ALA GLU LEU LEU GLY MSE GLU LYS VAL SEQRES 32 A 511 GLY LEU LEU LYS VAL VAL GLY GLY GLY ALA ARG SER GLU SEQRES 33 A 511 ALA TRP LEU ARG MSE ILE ALA ASP ASN LEU ASN VAL SER SEQRES 34 A 511 LEU LEU VAL LYS PRO ASP ALA HIS LEU HIS PRO LEU ARG SEQRES 35 A 511 GLY LEU ALA ALA LEU ALA ALA VAL GLU LEU GLU TRP SER SEQRES 36 A 511 HIS SER ILE GLN ASP PHE LEU ARG GLU ALA ASP LEU ARG SEQRES 37 A 511 GLU PRO ALA SER ASN ILE LEU HIS PRO GLN PRO CYS ASP SEQRES 38 A 511 GLU GLY ARG ARG ARG ARG LYS PHE GLU ARG PHE LYS GLN SEQRES 39 A 511 CYS VAL GLU THR LEU GLY ARG LEU ASP GLU GLY HIS HIS SEQRES 40 A 511 HIS HIS HIS HIS MODRES 3KZB MSE A 81 MET SELENOMETHIONINE MODRES 3KZB MSE A 129 MET SELENOMETHIONINE MODRES 3KZB MSE A 206 MET SELENOMETHIONINE MODRES 3KZB MSE A 279 MET SELENOMETHIONINE MODRES 3KZB MSE A 329 MET SELENOMETHIONINE MODRES 3KZB MSE A 398 MET SELENOMETHIONINE MODRES 3KZB MSE A 419 MET SELENOMETHIONINE HET MSE A 81 8 HET MSE A 129 8 HET MSE A 206 8 HET MSE A 279 8 HET MSE A 329 8 HET MSE A 398 8 HET MSE A 419 8 HET ADP A1760 27 HETNAM MSE SELENOMETHIONINE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 HOH *96(H2 O) HELIX 1 1 ASP A 47 GLN A 64 1 18 HELIX 2 2 ASP A 68 ARG A 70 5 3 HELIX 3 3 PRO A 105 GLY A 117 1 13 HELIX 4 4 GLY A 117 GLU A 126 1 10 HELIX 5 5 SER A 133 PHE A 145 1 13 HELIX 6 6 PHE A 145 ARG A 151 1 7 HELIX 7 7 ALA A 159 GLY A 169 1 11 HELIX 8 8 ARG A 175 THR A 181 1 7 HELIX 9 9 HIS A 192 TYR A 199 1 8 HELIX 10 10 SER A 202 MSE A 206 5 5 HELIX 11 11 SER A 220 GLY A 228 1 9 HELIX 12 12 ASP A 241 VAL A 249 1 9 HELIX 13 13 ALA A 304 LEU A 312 1 9 HELIX 14 14 THR A 313 GLY A 316 5 4 HELIX 15 15 CYS A 323 VAL A 334 1 12 HELIX 16 16 THR A 373 GLY A 397 1 25 HELIX 17 17 GLY A 408 ARG A 412 5 5 HELIX 18 18 SER A 413 ASN A 425 1 13 HELIX 19 19 LEU A 436 LEU A 450 1 15 HELIX 20 20 SER A 455 GLU A 467 1 13 HELIX 21 21 ASP A 479 LEU A 497 1 19 SHEET 1 A 5 LEU A 26 ALA A 33 0 SHEET 2 A 5 GLU A 14 ALA A 20 -1 N VAL A 15 O ILE A 32 SHEET 3 A 5 TYR A 4 ILE A 10 -1 N ILE A 5 O ALA A 20 SHEET 4 A 5 VAL A 72 GLY A 79 1 O ALA A 74 N ALA A 6 SHEET 5 A 5 LEU A 239 GLY A 240 1 O LEU A 239 N LEU A 77 SHEET 1 B 2 GLU A 45 GLN A 46 0 SHEET 2 B 2 ALA A 97 VAL A 98 -1 O ALA A 97 N GLN A 46 SHEET 1 C 2 MSE A 81 LEU A 87 0 SHEET 2 C 2 HIS A 154 GLY A 158 -1 O HIS A 154 N LEU A 87 SHEET 1 D 2 ALA A 172 ASP A 174 0 SHEET 2 D 2 ARG A 208 LEU A 210 1 O LEU A 210 N THR A 173 SHEET 1 E 2 TYR A 184 ARG A 185 0 SHEET 2 E 2 ALA A 190 TRP A 191 -1 O ALA A 190 N ARG A 185 SHEET 1 F 2 GLN A 215 GLY A 218 0 SHEET 2 F 2 PRO A 234 LEU A 236 -1 O VAL A 235 N VAL A 216 SHEET 1 G 6 PHE A 285 LEU A 287 0 SHEET 2 G 6 LYS A 294 VAL A 301 -1 O LEU A 296 N LEU A 287 SHEET 3 G 6 GLY A 265 GLN A 272 -1 N GLY A 265 O VAL A 301 SHEET 4 G 6 ALA A 257 LEU A 261 -1 N HIS A 260 O TRP A 266 SHEET 5 G 6 LEU A 403 VAL A 407 1 O VAL A 407 N LEU A 261 SHEET 6 G 6 SER A 427 VAL A 430 1 O LEU A 429 N VAL A 406 SHEET 1 H 2 LEU A 344 TYR A 348 0 SHEET 2 H 2 ARG A 362 LEU A 366 -1 O LEU A 366 N LEU A 344 SSBOND 1 CYS A 354 CYS A 392 1555 1555 2.05 LINK C GLN A 80 N MSE A 81 1555 1555 1.32 LINK C MSE A 81 N GLN A 82 1555 1555 1.33 LINK C PRO A 128 N MSE A 129 1555 1555 1.33 LINK C MSE A 129 N THR A 130 1555 1555 1.33 LINK C LEU A 205 N MSE A 206 1555 1555 1.33 LINK C MSE A 206 N PRO A 207 1555 1555 1.34 LINK C ASP A 278 N MSE A 279 1555 1555 1.33 LINK C MSE A 279 N PRO A 280 1555 1555 1.34 LINK C HIS A 328 N MSE A 329 1555 1555 1.33 LINK C MSE A 329 N ALA A 330 1555 1555 1.33 LINK C GLY A 397 N MSE A 398 1555 1555 1.33 LINK C MSE A 398 N GLU A 399 1555 1555 1.33 LINK C ARG A 418 N MSE A 419 1555 1555 1.33 LINK C MSE A 419 N ILE A 420 1555 1555 1.33 CISPEP 1 CYS A 354 PRO A 355 0 3.57 CISPEP 2 CYS A 354 PRO A 355 0 4.11 SITE 1 AC1 10 GLY A 262 THR A 263 GLY A 305 ASN A 306 SITE 2 AC1 10 GLN A 309 PHE A 327 GLY A 409 GLY A 410 SITE 3 AC1 10 ARG A 412 HOH A 564 CRYST1 71.893 159.799 47.336 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013910 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006258 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021126 0.00000