HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 08-DEC-09 3KZP TITLE CRYSTAL STRUCTURE OF PUTATIVE DIGUANYLATE CYCLASE/PHOSPHODIESTERASE TITLE 2 FROM LISTARIA MONOCYTIGENES COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE DIGUANYLATE CYCLASE/PHOSPHODIESTERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LMO0111 PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES; SOURCE 3 ORGANISM_TAXID: 1639; SOURCE 4 GENE: LMO0111; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIPL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS EAL-DOMAIN, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR M.M.KLIMECKA,M.CHRUSZCZ,M.D.ZIMMERMAN,M.KUDRITSKA,A.SAVCHENKO, AUTHOR 2 A.EDWARDS,A.JOACHIMIAK,W.MINOR,MIDWEST CENTER FOR STRUCTURAL AUTHOR 3 GENOMICS (MCSG) REVDAT 3 13-APR-22 3KZP 1 AUTHOR JRNL REMARK SEQADV REVDAT 3 2 1 LINK REVDAT 2 13-JUL-11 3KZP 1 VERSN REVDAT 1 22-DEC-09 3KZP 0 JRNL AUTH M.M.KLIMECKA,M.CHRUSZCZ,M.D.ZIMMERMAN,M.KUDRITSKA, JRNL AUTH 2 A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK,W.MINOR JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE DIGUANYLATE JRNL TITL 2 CYCLASE/PHOSPHODIESTERASE FROM LISTARIA MONOCYTIGENES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 34327 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1714 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2221 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 123 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3771 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 408 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : 1.44000 REMARK 3 B33 (A**2) : -1.55000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.200 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.179 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.117 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.057 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3927 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2617 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5343 ; 1.750 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6422 ; 0.999 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 473 ; 6.303 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 183 ;41.118 ;24.754 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 683 ;13.975 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;15.007 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 606 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4317 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 797 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2355 ; 0.959 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 932 ; 0.296 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3832 ; 1.617 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1572 ; 2.698 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1511 ; 4.135 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 36 REMARK 3 ORIGIN FOR THE GROUP (A): 43.5750 48.3170 25.5280 REMARK 3 T TENSOR REMARK 3 T11: 0.0310 T22: 0.1011 REMARK 3 T33: 0.0765 T12: -0.0071 REMARK 3 T13: -0.0052 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 3.4807 L22: 5.2799 REMARK 3 L33: 3.4164 L12: 1.8724 REMARK 3 L13: -1.4941 L23: -1.6506 REMARK 3 S TENSOR REMARK 3 S11: -0.0221 S12: -0.1112 S13: 0.1369 REMARK 3 S21: -0.2674 S22: 0.1777 S23: 0.4599 REMARK 3 S31: 0.0031 S32: -0.2406 S33: -0.1556 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 37 A 142 REMARK 3 ORIGIN FOR THE GROUP (A): 58.3100 57.6270 23.8340 REMARK 3 T TENSOR REMARK 3 T11: 0.0820 T22: 0.0429 REMARK 3 T33: 0.0561 T12: -0.0197 REMARK 3 T13: 0.0001 T23: -0.0320 REMARK 3 L TENSOR REMARK 3 L11: 0.9596 L22: 0.9522 REMARK 3 L33: 1.6852 L12: 0.0296 REMARK 3 L13: -0.3545 L23: -0.4655 REMARK 3 S TENSOR REMARK 3 S11: 0.0404 S12: -0.1799 S13: 0.0889 REMARK 3 S21: 0.0370 S22: -0.0255 S23: 0.0105 REMARK 3 S31: -0.2090 S32: 0.1389 S33: -0.0149 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 143 A 205 REMARK 3 ORIGIN FOR THE GROUP (A): 58.4450 38.7010 14.9630 REMARK 3 T TENSOR REMARK 3 T11: 0.0703 T22: 0.0209 REMARK 3 T33: 0.0751 T12: 0.0014 REMARK 3 T13: 0.0149 T23: 0.0210 REMARK 3 L TENSOR REMARK 3 L11: 0.8734 L22: 0.7050 REMARK 3 L33: 2.2904 L12: -0.3368 REMARK 3 L13: -0.3475 L23: 0.2617 REMARK 3 S TENSOR REMARK 3 S11: -0.0397 S12: -0.0090 S13: -0.1705 REMARK 3 S21: 0.0419 S22: 0.0328 S23: 0.0612 REMARK 3 S31: 0.2427 S32: 0.0663 S33: 0.0069 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 206 A 235 REMARK 3 ORIGIN FOR THE GROUP (A): 46.0540 34.4280 21.1060 REMARK 3 T TENSOR REMARK 3 T11: 0.0896 T22: 0.1273 REMARK 3 T33: 0.1375 T12: -0.0561 REMARK 3 T13: 0.0181 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 6.2121 L22: 12.2807 REMARK 3 L33: 2.4216 L12: -8.0570 REMARK 3 L13: -2.4438 L23: 3.5547 REMARK 3 S TENSOR REMARK 3 S11: 0.1261 S12: 0.0928 S13: -0.6814 REMARK 3 S21: -0.1575 S22: -0.4059 S23: 0.8315 REMARK 3 S31: 0.2241 S32: -0.4244 S33: 0.2798 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 36 REMARK 3 ORIGIN FOR THE GROUP (A): 75.8700 47.8170 -10.6270 REMARK 3 T TENSOR REMARK 3 T11: 0.0333 T22: 0.1241 REMARK 3 T33: 0.1014 T12: -0.0108 REMARK 3 T13: -0.0074 T23: 0.0222 REMARK 3 L TENSOR REMARK 3 L11: 3.9627 L22: 5.6215 REMARK 3 L33: 3.8179 L12: -1.7002 REMARK 3 L13: -1.6481 L23: 1.9992 REMARK 3 S TENSOR REMARK 3 S11: 0.0507 S12: 0.1131 S13: 0.1526 REMARK 3 S21: 0.2099 S22: 0.1409 S23: -0.5574 REMARK 3 S31: 0.0127 S32: 0.3139 S33: -0.1916 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 37 B 142 REMARK 3 ORIGIN FOR THE GROUP (A): 61.2300 57.3250 -9.2640 REMARK 3 T TENSOR REMARK 3 T11: 0.1097 T22: 0.0657 REMARK 3 T33: 0.0771 T12: 0.0200 REMARK 3 T13: 0.0105 T23: 0.0502 REMARK 3 L TENSOR REMARK 3 L11: 1.3079 L22: 0.7994 REMARK 3 L33: 2.0936 L12: -0.2206 REMARK 3 L13: -0.5981 L23: 0.9790 REMARK 3 S TENSOR REMARK 3 S11: 0.1144 S12: 0.2876 S13: 0.1842 REMARK 3 S21: -0.1120 S22: -0.0514 S23: -0.0353 REMARK 3 S31: -0.3209 S32: -0.1373 S33: -0.0631 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 143 B 205 REMARK 3 ORIGIN FOR THE GROUP (A): 61.2950 38.4670 0.0750 REMARK 3 T TENSOR REMARK 3 T11: 0.0876 T22: 0.0146 REMARK 3 T33: 0.0630 T12: 0.0098 REMARK 3 T13: 0.0187 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 1.5908 L22: 1.3567 REMARK 3 L33: 3.1257 L12: -0.2216 REMARK 3 L13: 0.3996 L23: -0.5222 REMARK 3 S TENSOR REMARK 3 S11: -0.0115 S12: 0.0393 S13: -0.2172 REMARK 3 S21: -0.0380 S22: 0.0389 S23: -0.0295 REMARK 3 S31: 0.3653 S32: 0.1370 S33: -0.0273 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 206 B 235 REMARK 3 ORIGIN FOR THE GROUP (A): 73.9550 34.4190 -5.8960 REMARK 3 T TENSOR REMARK 3 T11: 0.1594 T22: 0.1211 REMARK 3 T33: 0.1861 T12: 0.0724 REMARK 3 T13: 0.0624 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 6.7964 L22: 9.8720 REMARK 3 L33: 7.0364 L12: 2.3299 REMARK 3 L13: -2.2493 L23: -3.5453 REMARK 3 S TENSOR REMARK 3 S11: -0.2758 S12: -0.0059 S13: -1.0108 REMARK 3 S21: 0.2070 S22: 0.0182 S23: -0.0650 REMARK 3 S31: 0.7697 S32: 0.1955 S33: 0.2575 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 4 REMARK 4 3KZP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-DEC-09. REMARK 100 THE DEPOSITION ID IS D_1000056649. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : SI-111 CHANNEL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34443 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : 0.09100 REMARK 200 FOR THE DATA SET : 21.8850 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.51300 REMARK 200 R SYM FOR SHELL (I) : 0.51300 REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, MLPHARE, SHELXD, DM, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CA ACETATE, 0.1 M NA CACODILATE, REMARK 280 9% PEG 8K, PH 6.9, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.88300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.10500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.02000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.10500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.88300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.02000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -109.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 GLY A 2 REMARK 465 LEU A 3 REMARK 465 MSE A 4 REMARK 465 MSE B 1 REMARK 465 GLY B 2 REMARK 465 LEU B 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 210 CG CD CE NZ REMARK 470 GLU A 211 CG CD OE1 OE2 REMARK 470 GLU A 217 CG CD OE1 OE2 REMARK 470 MSE B 4 CG SE CE REMARK 470 LYS B 5 CG CD CE NZ REMARK 470 GLU B 88 CG CD OE1 OE2 REMARK 470 LYS B 210 CG CD CE NZ REMARK 470 GLU B 211 CG CD OE1 OE2 REMARK 470 GLU B 217 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 70 79.48 -118.00 REMARK 500 PHE B 224 168.58 176.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 240 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 25 OE2 REMARK 620 2 ASN A 78 OD1 86.9 REMARK 620 3 GLU A 106 OE1 95.4 94.9 REMARK 620 4 ASP A 147 OD2 159.8 105.2 99.5 REMARK 620 5 HOH A 303 O 68.3 88.2 163.2 95.5 REMARK 620 6 HOH A 472 O 80.8 163.9 96.6 83.9 77.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 237 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 25 OE2 REMARK 620 2 ASN B 78 OD1 89.6 REMARK 620 3 GLU B 106 OE1 96.7 95.3 REMARK 620 4 ASP B 147 OD2 159.4 102.7 98.5 REMARK 620 5 HOH B 300 O 68.8 92.1 163.8 93.9 REMARK 620 6 HOH B 338 O 79.7 164.5 97.0 84.7 73.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 236 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 237 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 238 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 239 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 240 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAC A 241 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 236 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 237 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 238 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAC B 239 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC7867 RELATED DB: TARGETDB DBREF 3KZP A 2 235 UNP Q8YAK7 Q8YAK7_LISMO 2 235 DBREF 3KZP B 2 235 UNP Q8YAK7 Q8YAK7_LISMO 2 235 SEQADV 3KZP MSE A 1 UNP Q8YAK7 INITIATING METHIONINE SEQADV 3KZP MSE B 1 UNP Q8YAK7 INITIATING METHIONINE SEQRES 1 A 235 MSE GLY LEU MSE LYS PHE GLN LEU PHE ILE GLN PRO LYS SEQRES 2 A 235 LEU ASP VAL LEU GLN GLY ASN ILE VAL GLU TYR GLU ILE SEQRES 3 A 235 LEU LEU ARG ASP ASP SER ALA VAL PRO ARG PHE PRO LEU SEQRES 4 A 235 SER GLU LEU GLU ALA VAL LEU ALA ASP GLU GLU LEU TYR SEQRES 5 A 235 LEU ALA PHE SER GLU TRP PHE SER GLU ALA PHE LEU ASP SEQRES 6 A 235 VAL LEU LYS LYS TYR PRO ASN ASP ARG PHE ALA ILE ASN SEQRES 7 A 235 ILE ALA PRO GLN GLN LEU PHE TYR ILE GLU THR LEU HIS SEQRES 8 A 235 TRP LEU ASP LYS LEU LYS SER GLU SER HIS ARG ILE THR SEQRES 9 A 235 VAL GLU MSE THR GLU ASP ILE PHE ASP VAL PRO GLY HIS SEQRES 10 A 235 LYS ARG HIS LEU ASN ALA ASN ASP LYS ASN ALA PHE ILE SEQRES 11 A 235 LEU ASN LYS ILE LYS VAL ILE HIS GLY LEU GLY TYR HIS SEQRES 12 A 235 ILE ALA ILE ASP ASP VAL SER CYS GLY LEU ASN SER LEU SEQRES 13 A 235 GLU ARG VAL MSE SER TYR LEU PRO TYR ILE ILE GLU ILE SEQRES 14 A 235 LYS PHE SER LEU ILE HIS PHE LYS ASN ILE PRO LEU GLU SEQRES 15 A 235 ASP LEU LEU LEU PHE ILE LYS ALA TRP ALA ASN PHE ALA SEQRES 16 A 235 GLN LYS ASN LYS LEU ASP PHE VAL VAL GLU GLY ILE GLU SEQRES 17 A 235 THR LYS GLU THR MSE THR LEU LEU GLU SER HIS GLY VAL SEQRES 18 A 235 SER ILE PHE GLN GLY TYR LEU VAL ASN LYS PRO PHE PRO SEQRES 19 A 235 VAL SEQRES 1 B 235 MSE GLY LEU MSE LYS PHE GLN LEU PHE ILE GLN PRO LYS SEQRES 2 B 235 LEU ASP VAL LEU GLN GLY ASN ILE VAL GLU TYR GLU ILE SEQRES 3 B 235 LEU LEU ARG ASP ASP SER ALA VAL PRO ARG PHE PRO LEU SEQRES 4 B 235 SER GLU LEU GLU ALA VAL LEU ALA ASP GLU GLU LEU TYR SEQRES 5 B 235 LEU ALA PHE SER GLU TRP PHE SER GLU ALA PHE LEU ASP SEQRES 6 B 235 VAL LEU LYS LYS TYR PRO ASN ASP ARG PHE ALA ILE ASN SEQRES 7 B 235 ILE ALA PRO GLN GLN LEU PHE TYR ILE GLU THR LEU HIS SEQRES 8 B 235 TRP LEU ASP LYS LEU LYS SER GLU SER HIS ARG ILE THR SEQRES 9 B 235 VAL GLU MSE THR GLU ASP ILE PHE ASP VAL PRO GLY HIS SEQRES 10 B 235 LYS ARG HIS LEU ASN ALA ASN ASP LYS ASN ALA PHE ILE SEQRES 11 B 235 LEU ASN LYS ILE LYS VAL ILE HIS GLY LEU GLY TYR HIS SEQRES 12 B 235 ILE ALA ILE ASP ASP VAL SER CYS GLY LEU ASN SER LEU SEQRES 13 B 235 GLU ARG VAL MSE SER TYR LEU PRO TYR ILE ILE GLU ILE SEQRES 14 B 235 LYS PHE SER LEU ILE HIS PHE LYS ASN ILE PRO LEU GLU SEQRES 15 B 235 ASP LEU LEU LEU PHE ILE LYS ALA TRP ALA ASN PHE ALA SEQRES 16 B 235 GLN LYS ASN LYS LEU ASP PHE VAL VAL GLU GLY ILE GLU SEQRES 17 B 235 THR LYS GLU THR MSE THR LEU LEU GLU SER HIS GLY VAL SEQRES 18 B 235 SER ILE PHE GLN GLY TYR LEU VAL ASN LYS PRO PHE PRO SEQRES 19 B 235 VAL MODRES 3KZP MSE A 107 MET SELENOMETHIONINE MODRES 3KZP MSE A 160 MET SELENOMETHIONINE MODRES 3KZP MSE A 213 MET SELENOMETHIONINE MODRES 3KZP MSE B 4 MET SELENOMETHIONINE MODRES 3KZP MSE B 107 MET SELENOMETHIONINE MODRES 3KZP MSE B 160 MET SELENOMETHIONINE MODRES 3KZP MSE B 213 MET SELENOMETHIONINE HET MSE A 107 8 HET MSE A 160 8 HET MSE A 213 8 HET MSE B 4 5 HET MSE B 107 8 HET MSE B 160 8 HET MSE B 213 8 HET CL A 236 1 HET CL A 237 1 HET CL A 238 1 HET CL A 239 1 HET CA A 240 1 HET CAC A 241 5 HET CL B 236 1 HET CA B 237 1 HET CL B 238 1 HET CAC B 239 5 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM CA CALCIUM ION HETNAM CAC CACODYLATE ION HETSYN CAC DIMETHYLARSINATE FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 3 CL 6(CL 1-) FORMUL 7 CA 2(CA 2+) FORMUL 8 CAC 2(C2 H6 AS O2 1-) FORMUL 13 HOH *408(H2 O) HELIX 1 1 PRO A 38 ALA A 47 1 10 HELIX 2 2 ASP A 48 TYR A 70 1 23 HELIX 3 3 ALA A 80 PHE A 85 5 6 HELIX 4 4 TYR A 86 LEU A 96 1 11 HELIX 5 5 LYS A 97 HIS A 101 5 5 HELIX 6 6 PRO A 115 ARG A 119 5 5 HELIX 7 7 ASN A 122 LEU A 140 1 19 HELIX 8 8 SER A 155 LEU A 163 1 9 HELIX 9 9 PRO A 164 ILE A 166 5 3 HELIX 10 10 ILE A 174 LYS A 177 5 4 HELIX 11 11 PRO A 180 ASN A 198 1 19 HELIX 12 12 LYS A 210 HIS A 219 1 10 HELIX 13 13 PRO B 38 ALA B 47 1 10 HELIX 14 14 ASP B 48 TYR B 70 1 23 HELIX 15 15 ALA B 80 PHE B 85 5 6 HELIX 16 16 TYR B 86 LEU B 96 1 11 HELIX 17 17 LYS B 97 HIS B 101 5 5 HELIX 18 18 PRO B 115 ARG B 119 5 5 HELIX 19 19 ASN B 122 LEU B 140 1 19 HELIX 20 20 SER B 155 LEU B 163 1 9 HELIX 21 21 PRO B 164 ILE B 166 5 3 HELIX 22 22 ILE B 174 LYS B 177 5 4 HELIX 23 23 PRO B 180 ASN B 198 1 19 HELIX 24 24 THR B 209 HIS B 219 1 11 SHEET 1 A 9 GLN A 225 LEU A 228 0 SHEET 2 A 9 ASP A 201 ILE A 207 1 N PHE A 202 O GLN A 225 SHEET 3 A 9 GLU A 168 SER A 172 1 N PHE A 171 O VAL A 203 SHEET 4 A 9 HIS A 143 ILE A 146 1 N ILE A 146 O LYS A 170 SHEET 5 A 9 ILE A 103 MSE A 107 1 N MSE A 107 O ALA A 145 SHEET 6 A 9 PHE A 75 ILE A 79 1 N ILE A 77 O GLU A 106 SHEET 7 A 9 ILE A 21 ARG A 29 1 N ILE A 26 O ALA A 76 SHEET 8 A 9 GLN A 7 LEU A 14 -1 N LYS A 13 O VAL A 22 SHEET 9 A 9 PHE A 233 PRO A 234 -1 O PHE A 233 N ILE A 10 SHEET 1 B 9 GLN B 225 LEU B 228 0 SHEET 2 B 9 ASP B 201 ILE B 207 1 N VAL B 204 O TYR B 227 SHEET 3 B 9 GLU B 168 SER B 172 1 N ILE B 169 O VAL B 203 SHEET 4 B 9 HIS B 143 ILE B 146 1 N ILE B 146 O LYS B 170 SHEET 5 B 9 ILE B 103 MSE B 107 1 N VAL B 105 O HIS B 143 SHEET 6 B 9 PHE B 75 ILE B 79 1 N ILE B 77 O GLU B 106 SHEET 7 B 9 ILE B 21 ARG B 29 1 N ILE B 26 O ALA B 76 SHEET 8 B 9 GLN B 7 LEU B 14 -1 N LYS B 13 O VAL B 22 SHEET 9 B 9 PHE B 233 PRO B 234 -1 O PHE B 233 N ILE B 10 LINK C MSE A 107 N THR A 108 1555 1555 1.32 LINK C MSE A 160 N SER A 161 1555 1555 1.32 LINK C MSE A 213 N THR A 214 1555 1555 1.33 LINK C MSE B 4 N LYS B 5 1555 1555 1.31 LINK C MSE B 107 N THR B 108 1555 1555 1.34 LINK C MSE B 160 N SER B 161 1555 1555 1.34 LINK C MSE B 213 N THR B 214 1555 1555 1.33 LINK OE2 GLU A 25 CA CA A 240 1555 1555 2.36 LINK OD1 ASN A 78 CA CA A 240 1555 1555 2.38 LINK OE1 GLU A 106 CA CA A 240 1555 1555 2.32 LINK OD2 ASP A 147 CA CA A 240 1555 1555 2.35 LINK CA CA A 240 O HOH A 303 1555 1555 2.63 LINK CA CA A 240 O HOH A 472 1555 1555 2.55 LINK OE2 GLU B 25 CA CA B 237 1555 1555 2.35 LINK OD1 ASN B 78 CA CA B 237 1555 1555 2.42 LINK OE1 GLU B 106 CA CA B 237 1555 1555 2.29 LINK OD2 ASP B 147 CA CA B 237 1555 1555 2.34 LINK CA CA B 237 O HOH B 300 1555 1555 2.58 LINK CA CA B 237 O HOH B 338 1555 1555 2.47 SITE 1 AC1 4 SER A 222 ILE A 223 HOH A 294 HOH A 343 SITE 1 AC2 4 LEU A 28 ASN A 78 HOH A 280 HOH A 382 SITE 1 AC3 2 SER A 150 SER B 150 SITE 1 AC4 5 PHE A 176 ASN A 178 ILE A 179 HOH A 371 SITE 2 AC4 5 MSE B 160 SITE 1 AC5 6 GLU A 25 ASN A 78 GLU A 106 ASP A 147 SITE 2 AC5 6 HOH A 303 HOH A 472 SITE 1 AC6 4 ARG A 74 HOH A 320 HOH A 470 HOH A 507 SITE 1 AC7 3 LEU B 28 ASN B 78 HOH B 271 SITE 1 AC8 6 GLU B 25 ASN B 78 GLU B 106 ASP B 147 SITE 2 AC8 6 HOH B 300 HOH B 338 SITE 1 AC9 4 PHE B 85 TYR B 86 ILE B 87 HIS B 117 SITE 1 BC1 2 ARG B 74 HOH B 267 CRYST1 59.766 92.040 96.210 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016730 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010870 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010390 0.00000