HEADER TRANSFERASE 09-DEC-09 3L01 TITLE CRYSTAL STRUCTURE OF MONOMERIC GLYCOGEN SYNTHASE FROM PYROCOCCUS TITLE 2 ABYSSI COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLGA GLYCOGEN SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-426; COMPND 5 EC: 2.4.1.21; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS ABYSSI; SOURCE 3 ORGANISM_TAXID: 29292; SOURCE 4 GENE: PYRAB00770, PAB2292; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3)/PG-TF2; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PCOLD I KEYWDS GLYCOSYLTRANSFERASE FAMILY, 5 UDP/ADP-GLUCOSE-GLYCOGEN SYNTHASE, TWO KEYWDS 2 ROSSMAN FOLDS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.DIAZ,C.MARTINEZ-PONS,I.FITA,J.C.FERRER,J.J.GUINOVART REVDAT 5 01-NOV-23 3L01 1 REMARK REVDAT 4 10-NOV-21 3L01 1 SEQADV HETSYN REVDAT 3 29-JUL-20 3L01 1 COMPND REMARK SEQADV HET REVDAT 3 2 1 HETNAM HETSYN FORMUL LINK REVDAT 3 3 1 SITE ATOM REVDAT 2 08-JUN-11 3L01 1 JRNL REVDAT 1 29-DEC-10 3L01 0 JRNL AUTH A.DIAZ,C.MARTINEZ-PONS,I.FITA,J.C.FERRER,J.J.GUINOVART JRNL TITL PROCESSIVITY AND SUBCELLULAR LOCALIZATION OF GLYCOGEN JRNL TITL 2 SYNTHASE DEPEND ON A NON-CATALYTIC HIGH AFFINITY JRNL TITL 3 GLYCOGEN-BINDING SITE. JRNL REF J.BIOL.CHEM. V. 286 18505 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21464127 JRNL DOI 10.1074/JBC.M111.236109 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0066 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 83.7 REMARK 3 NUMBER OF REFLECTIONS : 44724 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.500 REMARK 3 FREE R VALUE TEST SET COUNT : 2023 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3349 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6788 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 126 REMARK 3 SOLVENT ATOMS : 97 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.57000 REMARK 3 B22 (A**2) : -1.88000 REMARK 3 B33 (A**2) : 2.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.383 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.259 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.164 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.610 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7064 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 6532 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9532 ; 1.570 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15166 ; 1.040 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 854 ; 5.909 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 314 ;37.987 ;23.057 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1216 ;19.991 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 50 ;21.739 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1052 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7712 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1526 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4224 ; 3.352 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1770 ; 0.038 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6772 ; 4.122 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2840 ; 6.423 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2760 ; 8.155 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A -1 A 217 2 REMARK 3 1 B -1 B 217 2 REMARK 3 2 A 218 A 426 2 REMARK 3 2 B 218 B 426 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 2510 ; 0.050 ; 0.050 REMARK 3 MEDIUM POSITIONAL 1 A (A): 4109 ; 0.150 ; 0.500 REMARK 3 TIGHT THERMAL 1 A (A**2): 2510 ; 0.260 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 4109 ; 0.230 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 217 REMARK 3 ORIGIN FOR THE GROUP (A): 13.6700 -8.3490 -6.2570 REMARK 3 T TENSOR REMARK 3 T11: 0.1647 T22: 0.2745 REMARK 3 T33: 0.0065 T12: 0.0275 REMARK 3 T13: 0.0139 T23: 0.0103 REMARK 3 L TENSOR REMARK 3 L11: 1.5016 L22: 1.5552 REMARK 3 L33: 1.9831 L12: 0.2520 REMARK 3 L13: 0.4462 L23: 0.1688 REMARK 3 S TENSOR REMARK 3 S11: -0.0132 S12: -0.0779 S13: 0.0743 REMARK 3 S21: 0.0651 S22: -0.0384 S23: 0.0156 REMARK 3 S31: -0.1414 S32: -0.0414 S33: 0.0516 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 218 A 426 REMARK 3 ORIGIN FOR THE GROUP (A): 16.2460 -26.4530 -33.7730 REMARK 3 T TENSOR REMARK 3 T11: 0.3453 T22: 0.3751 REMARK 3 T33: 0.1994 T12: 0.0026 REMARK 3 T13: 0.0821 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 1.6205 L22: 3.4020 REMARK 3 L33: 2.3333 L12: 0.4061 REMARK 3 L13: -0.8543 L23: -0.0354 REMARK 3 S TENSOR REMARK 3 S11: -0.1744 S12: 0.1355 S13: -0.3987 REMARK 3 S21: -0.5020 S22: -0.0302 S23: -0.5543 REMARK 3 S31: 0.2969 S32: 0.1319 S33: 0.2046 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -1 B 217 REMARK 3 ORIGIN FOR THE GROUP (A): 33.5640 -12.5230 29.3200 REMARK 3 T TENSOR REMARK 3 T11: 0.2764 T22: 0.2524 REMARK 3 T33: 0.0096 T12: -0.0232 REMARK 3 T13: 0.0108 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.9713 L22: 1.4310 REMARK 3 L33: 1.5495 L12: -0.3768 REMARK 3 L13: -0.0241 L23: -0.0013 REMARK 3 S TENSOR REMARK 3 S11: -0.0438 S12: -0.0612 S13: -0.0050 REMARK 3 S21: 0.1855 S22: 0.0372 S23: 0.1122 REMARK 3 S31: -0.0359 S32: -0.0985 S33: 0.0066 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 218 B 426 REMARK 3 ORIGIN FOR THE GROUP (A): 52.3490 -10.7650 2.2230 REMARK 3 T TENSOR REMARK 3 T11: 0.2961 T22: 0.5345 REMARK 3 T33: 0.2489 T12: 0.0056 REMARK 3 T13: 0.0283 T23: 0.1160 REMARK 3 L TENSOR REMARK 3 L11: 2.9432 L22: 1.8628 REMARK 3 L33: 2.7585 L12: -0.1768 REMARK 3 L13: 0.0862 L23: -0.8353 REMARK 3 S TENSOR REMARK 3 S11: 0.0201 S12: 0.4567 S13: 0.4952 REMARK 3 S21: -0.1111 S22: -0.2805 S23: -0.5513 REMARK 3 S31: -0.1671 S32: 0.6263 S33: 0.2604 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 3L01 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-DEC-09. REMARK 100 THE DEPOSITION ID IS D_1000056661. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM16 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98020 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44800 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.0 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : 0.09500 REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : 0.10000 REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2BIS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, POTASSIUM CHLORIDE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 51.80200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.55050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.50850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.55050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 51.80200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 59.50850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 10 130.24 -171.85 REMARK 500 VAL A 15 -72.28 -108.29 REMARK 500 HIS A 43 29.69 46.63 REMARK 500 TYR A 89 52.73 -103.84 REMARK 500 ASP A 128 169.85 70.15 REMARK 500 LYS A 243 -3.97 -55.88 REMARK 500 GLN A 262 -82.95 -136.52 REMARK 500 SER A 276 18.44 -65.47 REMARK 500 PHE A 281 -8.24 -54.42 REMARK 500 ASN A 309 -9.02 -146.95 REMARK 500 PRO A 335 56.21 -91.46 REMARK 500 PHE A 341 -74.30 -124.22 REMARK 500 SER A 394 89.75 -51.36 REMARK 500 SER A 396 26.06 -63.43 REMARK 500 VAL B 15 -70.07 -114.77 REMARK 500 HIS B 43 27.02 46.04 REMARK 500 TYR B 89 58.47 -104.06 REMARK 500 ASP B 128 171.07 64.55 REMARK 500 LYS B 243 -0.31 -56.86 REMARK 500 GLN B 262 -82.44 -136.49 REMARK 500 SER B 276 22.18 -66.08 REMARK 500 PHE B 281 1.80 -59.18 REMARK 500 ASN B 309 -6.54 -144.47 REMARK 500 PHE B 341 -73.36 -123.23 REMARK 500 SER B 394 66.64 -51.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BIS RELATED DB: PDB REMARK 900 THE TRIMERIC ENZYME REMARK 900 RELATED ID: 1RZV RELATED DB: PDB REMARK 900 THE SAME ENZYME FROM AGROBACTERIUM TUMEFACIENS REMARK 900 RELATED ID: 3COP RELATED DB: PDB REMARK 900 THE SAME ENZYME FROM ESCHERICHIA COLI DBREF 3L01 A 1 426 UNP Q9V2J8 Q9V2J8_PYRAB 1 426 DBREF 3L01 B 1 426 UNP Q9V2J8 Q9V2J8_PYRAB 1 426 SEQADV 3L01 ARG A -1 UNP Q9V2J8 EXPRESSION TAG SEQADV 3L01 HIS A 0 UNP Q9V2J8 EXPRESSION TAG SEQADV 3L01 ALA A 426 UNP Q9V2J8 THR 426 ENGINEERED MUTATION SEQADV 3L01 ARG B -1 UNP Q9V2J8 EXPRESSION TAG SEQADV 3L01 HIS B 0 UNP Q9V2J8 EXPRESSION TAG SEQADV 3L01 ALA B 426 UNP Q9V2J8 THR 426 ENGINEERED MUTATION SEQRES 1 A 428 ARG HIS MET LYS VAL LEU LEU LEU GLY PHE GLU PHE LEU SEQRES 2 A 428 PRO VAL LYS VAL GLY GLY LEU ALA GLU ALA LEU THR ALA SEQRES 3 A 428 ILE SER GLU ALA LEU ALA SER LEU GLY HIS GLU VAL LEU SEQRES 4 A 428 VAL PHE THR PRO SER HIS GLY ARG PHE GLN GLY GLU GLU SEQRES 5 A 428 ILE GLY LYS ILE ARG VAL PHE GLY GLU GLU VAL GLN VAL SEQRES 6 A 428 LYS VAL SER TYR GLU GLU ARG GLY ASN LEU ARG ILE TYR SEQRES 7 A 428 ARG ILE GLY GLY GLY LEU LEU ASP SER GLU ASP VAL TYR SEQRES 8 A 428 GLY PRO GLY TRP ASP GLY LEU ILE ARG LYS ALA VAL THR SEQRES 9 A 428 PHE GLY ARG ALA SER VAL LEU LEU LEU ASN ASP LEU LEU SEQRES 10 A 428 ARG GLU GLU PRO LEU PRO ASP VAL VAL HIS PHE HIS ASP SEQRES 11 A 428 TRP HIS THR VAL PHE ALA GLY ALA LEU ILE LYS LYS TYR SEQRES 12 A 428 PHE LYS ILE PRO ALA VAL PHE THR ILE HIS ARG LEU ASN SEQRES 13 A 428 LYS SER LYS LEU PRO ALA PHE TYR PHE HIS GLU ALA GLY SEQRES 14 A 428 LEU SER GLU LEU ALA PRO TYR PRO ASP ILE ASP PRO GLU SEQRES 15 A 428 HIS THR GLY GLY TYR ILE ALA ASP ILE VAL THR THR VAL SEQRES 16 A 428 SER ARG GLY TYR LEU ILE ASP GLU TRP GLY PHE PHE ARG SEQRES 17 A 428 ASN PHE GLU GLY LYS ILE THR TYR VAL PHE ASN GLY ILE SEQRES 18 A 428 ASP CYS SER PHE TRP ASN GLU SER TYR LEU THR GLY SER SEQRES 19 A 428 ARG ASP GLU ARG LYS LYS SER LEU LEU SER LYS PHE GLY SEQRES 20 A 428 MET ASP GLU GLY VAL THR PHE MET PHE ILE GLY ARG PHE SEQRES 21 A 428 ASP ARG GLY GLN LYS GLY VAL ASP VAL LEU LEU LYS ALA SEQRES 22 A 428 ILE GLU ILE LEU SER SER LYS LYS GLU PHE GLN GLU MET SEQRES 23 A 428 ARG PHE ILE ILE ILE GLY LYS GLY ASP PRO GLU LEU GLU SEQRES 24 A 428 GLY TRP ALA ARG SER LEU GLU GLU LYS HIS GLY ASN VAL SEQRES 25 A 428 LYS VAL ILE THR GLU MET LEU SER ARG GLU PHE VAL ARG SEQRES 26 A 428 GLU LEU TYR GLY SER VAL ASP PHE VAL ILE ILE PRO SER SEQRES 27 A 428 TYR PHE GLU PRO PHE GLY LEU VAL ALA LEU GLU ALA MET SEQRES 28 A 428 CYS LEU GLY ALA ILE PRO ILE ALA SER ALA VAL GLY GLY SEQRES 29 A 428 LEU ARG ASP ILE ILE THR ASN GLU THR GLY ILE LEU VAL SEQRES 30 A 428 LYS ALA GLY ASP PRO GLY GLU LEU ALA ASN ALA ILE LEU SEQRES 31 A 428 LYS ALA LEU GLU LEU SER ARG SER ASP LEU SER LYS PHE SEQRES 32 A 428 ARG GLU ASN CYS LYS LYS ARG ALA MET SER PHE SER TRP SEQRES 33 A 428 GLU LYS SER ALA GLU ARG TYR VAL LYS ALA TYR ALA SEQRES 1 B 428 ARG HIS MET LYS VAL LEU LEU LEU GLY PHE GLU PHE LEU SEQRES 2 B 428 PRO VAL LYS VAL GLY GLY LEU ALA GLU ALA LEU THR ALA SEQRES 3 B 428 ILE SER GLU ALA LEU ALA SER LEU GLY HIS GLU VAL LEU SEQRES 4 B 428 VAL PHE THR PRO SER HIS GLY ARG PHE GLN GLY GLU GLU SEQRES 5 B 428 ILE GLY LYS ILE ARG VAL PHE GLY GLU GLU VAL GLN VAL SEQRES 6 B 428 LYS VAL SER TYR GLU GLU ARG GLY ASN LEU ARG ILE TYR SEQRES 7 B 428 ARG ILE GLY GLY GLY LEU LEU ASP SER GLU ASP VAL TYR SEQRES 8 B 428 GLY PRO GLY TRP ASP GLY LEU ILE ARG LYS ALA VAL THR SEQRES 9 B 428 PHE GLY ARG ALA SER VAL LEU LEU LEU ASN ASP LEU LEU SEQRES 10 B 428 ARG GLU GLU PRO LEU PRO ASP VAL VAL HIS PHE HIS ASP SEQRES 11 B 428 TRP HIS THR VAL PHE ALA GLY ALA LEU ILE LYS LYS TYR SEQRES 12 B 428 PHE LYS ILE PRO ALA VAL PHE THR ILE HIS ARG LEU ASN SEQRES 13 B 428 LYS SER LYS LEU PRO ALA PHE TYR PHE HIS GLU ALA GLY SEQRES 14 B 428 LEU SER GLU LEU ALA PRO TYR PRO ASP ILE ASP PRO GLU SEQRES 15 B 428 HIS THR GLY GLY TYR ILE ALA ASP ILE VAL THR THR VAL SEQRES 16 B 428 SER ARG GLY TYR LEU ILE ASP GLU TRP GLY PHE PHE ARG SEQRES 17 B 428 ASN PHE GLU GLY LYS ILE THR TYR VAL PHE ASN GLY ILE SEQRES 18 B 428 ASP CYS SER PHE TRP ASN GLU SER TYR LEU THR GLY SER SEQRES 19 B 428 ARG ASP GLU ARG LYS LYS SER LEU LEU SER LYS PHE GLY SEQRES 20 B 428 MET ASP GLU GLY VAL THR PHE MET PHE ILE GLY ARG PHE SEQRES 21 B 428 ASP ARG GLY GLN LYS GLY VAL ASP VAL LEU LEU LYS ALA SEQRES 22 B 428 ILE GLU ILE LEU SER SER LYS LYS GLU PHE GLN GLU MET SEQRES 23 B 428 ARG PHE ILE ILE ILE GLY LYS GLY ASP PRO GLU LEU GLU SEQRES 24 B 428 GLY TRP ALA ARG SER LEU GLU GLU LYS HIS GLY ASN VAL SEQRES 25 B 428 LYS VAL ILE THR GLU MET LEU SER ARG GLU PHE VAL ARG SEQRES 26 B 428 GLU LEU TYR GLY SER VAL ASP PHE VAL ILE ILE PRO SER SEQRES 27 B 428 TYR PHE GLU PRO PHE GLY LEU VAL ALA LEU GLU ALA MET SEQRES 28 B 428 CYS LEU GLY ALA ILE PRO ILE ALA SER ALA VAL GLY GLY SEQRES 29 B 428 LEU ARG ASP ILE ILE THR ASN GLU THR GLY ILE LEU VAL SEQRES 30 B 428 LYS ALA GLY ASP PRO GLY GLU LEU ALA ASN ALA ILE LEU SEQRES 31 B 428 LYS ALA LEU GLU LEU SER ARG SER ASP LEU SER LYS PHE SEQRES 32 B 428 ARG GLU ASN CYS LYS LYS ARG ALA MET SER PHE SER TRP SEQRES 33 B 428 GLU LYS SER ALA GLU ARG TYR VAL LYS ALA TYR ALA HET GLC C 1 12 HET GLC C 2 11 HET GLC C 3 11 HET GLC C 4 11 HET GLC D 1 12 HET GLC D 2 11 HET GLC D 3 11 HET GLC D 4 11 HET K A5600 1 HET K A5602 1 HET K A5607 1 HET CL A5700 1 HET CL A5703 1 HET CL A5704 1 HET GOL A6500 6 HET GOL A6502 6 HET K B5601 1 HET K B5605 1 HET K B5606 1 HET CL B5701 1 HET CL B5702 1 HET CL B5705 1 HET GOL B6501 6 HET GOL B6503 6 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM K POTASSIUM ION HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GLC 8(C6 H12 O6) FORMUL 5 K 6(K 1+) FORMUL 8 CL 6(CL 1-) FORMUL 11 GOL 4(C3 H8 O3) FORMUL 21 HOH *97(H2 O) HELIX 1 1 GLY A 17 LEU A 32 1 16 HELIX 2 2 GLY A 80 SER A 85 5 6 HELIX 3 3 PRO A 91 ARG A 116 1 26 HELIX 4 4 THR A 131 LYS A 143 1 13 HELIX 5 5 ALA A 160 ALA A 166 1 7 HELIX 6 6 LEU A 168 ALA A 172 5 5 HELIX 7 7 ASP A 178 ALA A 187 1 10 HELIX 8 8 SER A 194 GLU A 201 1 8 HELIX 9 9 GLU A 201 ARG A 206 1 6 HELIX 10 10 ASN A 207 GLU A 209 5 3 HELIX 11 11 ASN A 225 LEU A 229 5 5 HELIX 12 12 SER A 232 LYS A 243 1 12 HELIX 13 13 GLY A 264 SER A 276 1 13 HELIX 14 14 LYS A 279 GLN A 282 5 4 HELIX 15 15 ASP A 293 HIS A 307 1 15 HELIX 16 16 SER A 318 GLY A 327 1 10 HELIX 17 17 GLY A 342 LEU A 351 1 10 HELIX 18 18 GLY A 361 ILE A 367 1 7 HELIX 19 19 ASP A 379 SER A 394 1 16 HELIX 20 20 ASP A 397 MET A 410 1 14 HELIX 21 21 SER A 413 ALA A 426 1 14 HELIX 22 22 GLY B 17 LEU B 32 1 16 HELIX 23 23 GLY B 80 SER B 85 5 6 HELIX 24 24 PRO B 91 ARG B 116 1 26 HELIX 25 25 THR B 131 LYS B 143 1 13 HELIX 26 26 ALA B 160 ALA B 166 1 7 HELIX 27 27 LEU B 168 ALA B 172 5 5 HELIX 28 28 ASP B 178 ALA B 187 1 10 HELIX 29 29 SER B 194 GLU B 201 1 8 HELIX 30 30 GLU B 201 ARG B 206 1 6 HELIX 31 31 ASN B 207 GLU B 209 5 3 HELIX 32 32 ASN B 225 LEU B 229 5 5 HELIX 33 33 SER B 232 LYS B 243 1 12 HELIX 34 34 GLY B 264 SER B 276 1 13 HELIX 35 35 LYS B 278 GLN B 282 5 5 HELIX 36 36 ASP B 293 HIS B 307 1 15 HELIX 37 37 SER B 318 GLY B 327 1 10 HELIX 38 38 GLY B 342 LEU B 351 1 10 HELIX 39 39 GLY B 362 ILE B 367 1 6 HELIX 40 40 ASP B 379 SER B 394 1 16 HELIX 41 41 ASP B 397 MET B 410 1 14 HELIX 42 42 SER B 413 ALA B 426 1 14 SHEET 1 A 9 GLU A 49 VAL A 56 0 SHEET 2 A 9 GLU A 59 ARG A 70 -1 O VAL A 63 N GLY A 52 SHEET 3 A 9 LEU A 73 GLY A 79 -1 O ILE A 75 N GLU A 68 SHEET 4 A 9 GLU A 35 PRO A 41 1 N VAL A 38 O TYR A 76 SHEET 5 A 9 LYS A 2 LEU A 6 1 N VAL A 3 O GLU A 35 SHEET 6 A 9 VAL A 123 HIS A 127 1 O HIS A 125 N LEU A 4 SHEET 7 A 9 ALA A 146 ILE A 150 1 O THR A 149 N PHE A 126 SHEET 8 A 9 ILE A 189 THR A 192 1 O THR A 191 N ILE A 150 SHEET 9 A 9 ILE A 212 TYR A 214 1 O THR A 213 N VAL A 190 SHEET 1 B 2 LEU A 158 PRO A 159 0 SHEET 2 B 2 ASP A 176 ILE A 177 -1 O ILE A 177 N LEU A 158 SHEET 1 C 6 VAL A 310 ILE A 313 0 SHEET 2 C 6 MET A 284 ILE A 289 1 N PHE A 286 O LYS A 311 SHEET 3 C 6 VAL A 250 ILE A 255 1 N PHE A 252 O ARG A 285 SHEET 4 C 6 PHE A 331 ILE A 334 1 O ILE A 333 N MET A 253 SHEET 5 C 6 ILE A 354 SER A 358 1 O ILE A 356 N ILE A 334 SHEET 6 C 6 ILE A 373 VAL A 375 1 O ILE A 373 N PRO A 355 SHEET 1 D 9 GLU B 49 VAL B 56 0 SHEET 2 D 9 GLU B 59 ARG B 70 -1 O GLU B 59 N VAL B 56 SHEET 3 D 9 LEU B 73 GLY B 79 -1 O ILE B 75 N GLU B 68 SHEET 4 D 9 GLU B 35 PRO B 41 1 N VAL B 38 O ARG B 74 SHEET 5 D 9 LYS B 2 LEU B 6 1 N LEU B 5 O LEU B 37 SHEET 6 D 9 VAL B 123 HIS B 127 1 O HIS B 125 N LEU B 4 SHEET 7 D 9 ALA B 146 ILE B 150 1 O VAL B 147 N VAL B 124 SHEET 8 D 9 ILE B 189 THR B 192 1 O THR B 191 N ILE B 150 SHEET 9 D 9 ILE B 212 TYR B 214 1 O THR B 213 N VAL B 190 SHEET 1 E 2 LEU B 158 PRO B 159 0 SHEET 2 E 2 ASP B 176 ILE B 177 -1 O ILE B 177 N LEU B 158 SHEET 1 F 6 VAL B 310 ILE B 313 0 SHEET 2 F 6 MET B 284 ILE B 289 1 N PHE B 286 O LYS B 311 SHEET 3 F 6 VAL B 250 ILE B 255 1 N PHE B 252 O ARG B 285 SHEET 4 F 6 PHE B 331 ILE B 334 1 O ILE B 333 N MET B 253 SHEET 5 F 6 ILE B 354 SER B 358 1 O ILE B 356 N ILE B 334 SHEET 6 F 6 ILE B 373 VAL B 375 1 O ILE B 373 N PRO B 355 SSBOND 1 CYS A 221 CYS A 350 1555 1555 2.39 SSBOND 2 CYS B 221 CYS B 350 1555 1555 2.27 LINK O4 GLC C 1 C1 GLC C 2 1555 1555 1.45 LINK O4 GLC C 2 C1 GLC C 3 1555 1555 1.44 LINK O4 GLC C 3 C1 GLC C 4 1555 1555 1.42 LINK O4 GLC D 1 C1 GLC D 2 1555 1555 1.47 LINK O4 GLC D 2 C1 GLC D 3 1555 1555 1.43 LINK O4 GLC D 3 C1 GLC D 4 1555 1555 1.43 LINK OE2 GLU A 339 K K A5600 1555 1555 3.04 LINK OE2 GLU B 339 K K B5601 1555 1555 2.90 CISPEP 1 LEU A 11 PRO A 12 0 3.75 CISPEP 2 GLY A 90 PRO A 91 0 -2.14 CISPEP 3 LEU B 11 PRO B 12 0 1.78 CISPEP 4 GLY B 90 PRO B 91 0 0.60 CRYST1 103.604 119.017 141.101 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009652 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008402 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007087 0.00000