HEADER HYDROLASE 09-DEC-09 3L0A TITLE CRYSTAL STRUCTURE OF PUTATIVE EXONUCLEASE (RER070207002219) FROM TITLE 2 EUBACTERIUM RECTALE AT 2.19 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE EXONUCLEASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EUBACTERIUM RECTALE; SOURCE 3 ORGANISM_TAXID: 515619; SOURCE 4 STRAIN: ATCC 33656 / VPI 0990; SOURCE 5 GENE: EUBREC_2131, RER070207002219; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS RER070207002219, PUTATIVE EXONUCLEASE, STRUCTURAL GENOMICS, JOINT KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 PSI-2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 3L0A 1 REMARK SEQADV LINK REVDAT 4 17-JUL-19 3L0A 1 REMARK LINK REVDAT 3 01-NOV-17 3L0A 1 REMARK REVDAT 2 13-JUL-11 3L0A 1 VERSN REVDAT 1 12-JAN-10 3L0A 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE EXONUCLEASE (RER070207002219) JRNL TITL 2 FROM EUBACTERIUM RECTALE AT 2.19 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 15916 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 793 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.19 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.25 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1117 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2780 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2119 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 92 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 54.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.32000 REMARK 3 B22 (A**2) : 4.32000 REMARK 3 B33 (A**2) : -6.48000 REMARK 3 B12 (A**2) : 2.16000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.282 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.216 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.197 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.408 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2216 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1539 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2986 ; 1.561 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3748 ; 0.930 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 273 ; 5.988 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;40.353 ;24.476 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 398 ;17.098 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;15.778 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 313 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2454 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 454 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1334 ; 0.728 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 547 ; 0.154 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2145 ; 1.342 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 882 ; 2.264 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 837 ; 3.422 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 265 REMARK 3 ORIGIN FOR THE GROUP (A): 9.6610 28.2770 42.8470 REMARK 3 T TENSOR REMARK 3 T11: 0.1724 T22: 0.2190 REMARK 3 T33: 0.4834 T12: 0.0666 REMARK 3 T13: -0.0252 T23: 0.0317 REMARK 3 L TENSOR REMARK 3 L11: 2.2459 L22: 0.0464 REMARK 3 L33: 1.2091 L12: 0.1111 REMARK 3 L13: -0.4269 L23: 0.1954 REMARK 3 S TENSOR REMARK 3 S11: 0.0001 S12: -0.0246 S13: -0.3791 REMARK 3 S21: 0.0938 S22: 0.0084 S23: 0.0208 REMARK 3 S31: 0.4052 S32: 0.2090 S33: -0.0086 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS REMARK 3 ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED REMARK 3 SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. A ZINC REMARK 3 ION HAS BEEN MODELED BASED ON THE CHEMICAL ENVIRONMENT AND REMARK 3 ANOMALOUS DIFFERENCE FOURIERS. 5. PEG-4000 FRAGMENT (PE4) AND REMARK 3 TROMETHAMINE (TRS) MOLECULE FROM THE CRYSTALLIZATION SOLUTION REMARK 3 ARE MODELED. REMARK 4 REMARK 4 3L0A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-DEC-09. REMARK 100 THE DEPOSITION ID IS D_1000056670. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162,0.97936,0.97922 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15931 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.190 REMARK 200 RESOLUTION RANGE LOW (A) : 44.108 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.8400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.57600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2000M MGCL2, 30.0000% PEG-4000, 0.1M REMARK 280 TRIS PH 8.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.67500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 34.67500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 34.67500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A REMARK 300 TRIMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 44.12400 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 76.42501 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -44.12400 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 76.42501 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 2 CG CD OE1 NE2 REMARK 470 GLU A 48 CG CD OE1 OE2 REMARK 470 GLU A 50 CG CD OE1 OE2 REMARK 470 LYS A 51 CG CD CE NZ REMARK 470 LYS A 83 CG CD CE NZ REMARK 470 GLN A 214 CG CD OE1 NE2 REMARK 470 GLU A 215 CD OE1 OE2 REMARK 470 GLU A 236 CG CD OE1 OE2 REMARK 470 LYS A 253 CD CE NZ REMARK 470 ILE A 265 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 99 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 138 -47.07 -133.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PE4 A 268 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 266 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 35 SG REMARK 620 2 CYS A 240 SG 103.9 REMARK 620 3 CYS A 243 SG 120.9 106.1 REMARK 620 4 CYS A 246 SG 106.3 116.0 104.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 266 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 267 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE4 A 268 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 392282 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3L0A A 1 265 UNP C4ZCC6 C4ZCC6_EUBR3 1 265 SEQADV 3L0A GLY A 0 UNP C4ZCC6 EXPRESSION TAG SEQRES 1 A 266 GLY MSE GLN LEU THR SER GLU ASN TYR TYR SER GLN GLU SEQRES 2 A 266 ALA ASN LYS GLU TYR MSE SER VAL SER GLY TYR LYS ASP SEQRES 3 A 266 PHE ALA GLY THR TYR GLY LYS MSE PRO CYS GLU PHE TYR SEQRES 4 A 266 GLY MSE GLU LYS LEU ASN GLY ARG TRP GLU ASP GLU LYS SEQRES 5 A 266 SER THR ALA LEU LEU VAL GLY SER TYR VAL ASP SER TYR SEQRES 6 A 266 PHE GLU GLY SER LEU ASP GLN PHE LYS LYS ASP ASN PRO SEQRES 7 A 266 GLU ILE PHE THR GLN LYS GLY GLU LEU LYS ALA ASN PHE SEQRES 8 A 266 LYS GLN ALA GLU GLU ILE ILE ALA ARG ILE GLU ARG ASP SEQRES 9 A 266 GLU TYR PHE MSE LYS TYR MSE SER GLY GLN LYS GLN VAL SEQRES 10 A 266 ILE MSE THR GLY GLU LEU PHE GLY ALA LYS TRP LYS ILE SEQRES 11 A 266 LYS MSE ASP SER TYR ILE PRO GLY VAL ALA ILE VAL ASP SEQRES 12 A 266 LEU LYS VAL MSE ALA SER ILE THR ASP LEU LYS TRP VAL SEQRES 13 A 266 LYS ASP ILE GLY TYR LEU ASP PHE VAL ARG TYR TRP GLY SEQRES 14 A 266 TYR ASP ILE GLN GLY ALA VAL TYR GLN GLU ILE VAL ARG SEQRES 15 A 266 GLN ASN THR GLY GLU LYS LEU PRO PHE PHE ILE ALA GLY SEQRES 16 A 266 ALA THR LYS GLN THR GLU PRO ASP ILE ARG ILE ILE HIS SEQRES 17 A 266 VAL THR ASP ASN TYR LEU GLN GLU ALA LEU HIS MSE VAL SEQRES 18 A 266 GLU MSE ASN MSE PRO ARG ILE LEU ARG VAL LYS ASN GLY SEQRES 19 A 266 GLU VAL GLU PRO ASP ARG CYS GLU LEU CYS ASP CYS CYS SEQRES 20 A 266 ARG HIS ASN ARG VAL LEU LYS LYS PRO ILE SER ILE MSE SEQRES 21 A 266 ASP LEU THR ALA GLY ILE MODRES 3L0A MSE A 1 MET SELENOMETHIONINE MODRES 3L0A MSE A 18 MET SELENOMETHIONINE MODRES 3L0A MSE A 33 MET SELENOMETHIONINE MODRES 3L0A MSE A 40 MET SELENOMETHIONINE MODRES 3L0A MSE A 107 MET SELENOMETHIONINE MODRES 3L0A MSE A 110 MET SELENOMETHIONINE MODRES 3L0A MSE A 118 MET SELENOMETHIONINE MODRES 3L0A MSE A 131 MET SELENOMETHIONINE MODRES 3L0A MSE A 146 MET SELENOMETHIONINE MODRES 3L0A MSE A 219 MET SELENOMETHIONINE MODRES 3L0A MSE A 222 MET SELENOMETHIONINE MODRES 3L0A MSE A 224 MET SELENOMETHIONINE MODRES 3L0A MSE A 259 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 18 8 HET MSE A 33 8 HET MSE A 40 8 HET MSE A 107 8 HET MSE A 110 8 HET MSE A 118 8 HET MSE A 131 8 HET MSE A 146 8 HET MSE A 219 8 HET MSE A 222 8 HET MSE A 224 8 HET MSE A 259 8 HET ZN A 266 1 HET TRS A 267 8 HET PE4 A 268 16 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM PE4 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}- HETNAM 2 PE4 ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL HETSYN TRS TRIS BUFFER HETSYN PE4 POLYETHYLENE GLYCOL PEG4000 FORMUL 1 MSE 13(C5 H11 N O2 SE) FORMUL 2 ZN ZN 2+ FORMUL 3 TRS C4 H12 N O3 1+ FORMUL 4 PE4 C16 H34 O8 FORMUL 5 HOH *92(H2 O) HELIX 1 1 SER A 10 TYR A 17 1 8 HELIX 2 2 VAL A 20 GLY A 28 1 9 HELIX 3 3 CYS A 35 ASN A 44 1 10 HELIX 4 4 SER A 52 GLY A 67 1 16 HELIX 5 5 SER A 68 ASN A 76 1 9 HELIX 6 6 PRO A 77 PHE A 80 5 4 HELIX 7 7 LYS A 87 ARG A 102 1 16 HELIX 8 8 ASP A 103 MSE A 110 1 8 HELIX 9 9 ASP A 162 TRP A 167 1 6 HELIX 10 10 GLY A 168 GLY A 185 1 18 HELIX 11 11 THR A 209 ASN A 232 1 24 HELIX 12 12 CYS A 243 ARG A 250 1 8 HELIX 13 13 SER A 257 ALA A 263 1 7 SHEET 1 A 3 MSE A 18 SER A 19 0 SHEET 2 A 3 ALA A 125 ILE A 135 1 O LYS A 126 N MSE A 18 SHEET 3 A 3 GLN A 113 LEU A 122 -1 N GLY A 120 O TRP A 127 SHEET 1 B 5 MSE A 18 SER A 19 0 SHEET 2 B 5 ALA A 125 ILE A 135 1 O LYS A 126 N MSE A 18 SHEET 3 B 5 ALA A 139 MSE A 146 -1 O ALA A 139 N ILE A 135 SHEET 4 B 5 PHE A 190 THR A 196 1 O ALA A 193 N ASP A 142 SHEET 5 B 5 ILE A 203 VAL A 208 -1 O ILE A 206 N ILE A 192 SHEET 1 C 2 LYS A 153 VAL A 155 0 SHEET 2 C 2 GLY A 159 LEU A 161 -1 O GLY A 159 N VAL A 155 LINK C GLY A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N GLN A 2 1555 1555 1.33 LINK C TYR A 17 N MSE A 18 1555 1555 1.34 LINK C MSE A 18 N SER A 19 1555 1555 1.32 LINK C LYS A 32 N MSE A 33 1555 1555 1.33 LINK C MSE A 33 N PRO A 34 1555 1555 1.34 LINK C GLY A 39 N MSE A 40 1555 1555 1.33 LINK C MSE A 40 N GLU A 41 1555 1555 1.34 LINK C PHE A 106 N MSE A 107 1555 1555 1.33 LINK C MSE A 107 N LYS A 108 1555 1555 1.32 LINK C TYR A 109 N MSE A 110 1555 1555 1.33 LINK C MSE A 110 N SER A 111 1555 1555 1.33 LINK C ILE A 117 N MSE A 118 1555 1555 1.33 LINK C MSE A 118 N THR A 119 1555 1555 1.33 LINK C LYS A 130 N MSE A 131 1555 1555 1.33 LINK C MSE A 131 N ASP A 132 1555 1555 1.32 LINK C VAL A 145 N MSE A 146 1555 1555 1.33 LINK C MSE A 146 N ALA A 147 1555 1555 1.34 LINK C HIS A 218 N MSE A 219 1555 1555 1.33 LINK C MSE A 219 N VAL A 220 1555 1555 1.33 LINK C GLU A 221 N MSE A 222 1555 1555 1.34 LINK C MSE A 222 N ASN A 223 1555 1555 1.34 LINK C ASN A 223 N MSE A 224 1555 1555 1.33 LINK C MSE A 224 N PRO A 225 1555 1555 1.36 LINK C ILE A 258 N MSE A 259 1555 1555 1.35 LINK C MSE A 259 N ASP A 260 1555 1555 1.33 LINK SG CYS A 35 ZN ZN A 266 1555 1555 2.16 LINK SG CYS A 240 ZN ZN A 266 1555 1555 2.33 LINK SG CYS A 243 ZN ZN A 266 1555 1555 2.25 LINK SG CYS A 246 ZN ZN A 266 1555 1555 2.48 SITE 1 AC1 4 CYS A 35 CYS A 240 CYS A 243 CYS A 246 SITE 1 AC2 8 ASP A 62 GLN A 115 LYS A 130 ASP A 132 SITE 2 AC2 8 ASP A 142 LEU A 143 GLN A 172 TYR A 176 SITE 1 AC3 2 GLU A 85 TYR A 109 CRYST1 88.248 88.248 69.350 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011332 0.006542 0.000000 0.00000 SCALE2 0.000000 0.013085 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014420 0.00000