HEADER PHOTOSYNTHESIS 09-DEC-09 3L0F TITLE HIGH RESOLUTION STRUCTURE OF C-PHYCOCYANIN FROM THERMOSYNECHOCOCCUS TITLE 2 ELONGATUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-PHYCOCYANIN ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: C-PHYCOCYANIN BETA CHAIN; COMPND 6 CHAIN: B; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS ELONGATUS; SOURCE 3 ORGANISM_TAXID: 197221; SOURCE 4 STRAIN: BP-1; SOURCE 5 OTHER_DETAILS: FORMER NAME SYNECHOCOCCUS ELONGATUS; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS ELONGATUS; SOURCE 8 ORGANISM_TAXID: 197221; SOURCE 9 STRAIN: BP-1; SOURCE 10 GENE: CPCB, TLR1957 KEYWDS PHOTOSYNTHESIS, PHOTOSYSTEM II, LIGHT HARVESTING PROTEINS, KEYWDS 2 THERMOSTABILITY, BILE PIGMENT, CHLOROPLAST, CHROMOPHORE, ELECTRON KEYWDS 3 TRANSPORT, MEMBRANE, PHYCOBILISOME, PLASTID, THYLAKOID, TRANSPORT, KEYWDS 4 METHYLATION EXPDTA X-RAY DIFFRACTION AUTHOR R.FROMME,D.BRUNE,P.FROMME REVDAT 4 20-SEP-23 3L0F 1 REMARK REVDAT 3 01-FEB-23 3L0F 1 JRNL REMARK LINK REVDAT 2 13-JUL-11 3L0F 1 VERSN REVDAT 1 29-DEC-10 3L0F 0 JRNL AUTH R.FROMME,A.ISHCHENKO,M.METZ,S.R.CHOWDHURY,S.BASU,S.BOUTET, JRNL AUTH 2 P.FROMME,T.A.WHITE,A.BARTY,J.C.SPENCE,U.WEIERSTALL,W.LIU, JRNL AUTH 3 V.CHEREZOV JRNL TITL SERIAL FEMTOSECOND CRYSTALLOGRAPHY OF SOLUBLE PROTEINS IN JRNL TITL 2 LIPIDIC CUBIC PHASE. JRNL REF IUCRJ V. 2 545 2015 JRNL REFN ESSN 2052-2525 JRNL PMID 26306196 JRNL DOI 10.1107/S2052252515013160 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 82594 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.136 REMARK 3 R VALUE (WORKING SET) : 0.133 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4367 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6097 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 296 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2497 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 129 REMARK 3 SOLVENT ATOMS : 573 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.29000 REMARK 3 B22 (A**2) : -0.29000 REMARK 3 B33 (A**2) : 0.44000 REMARK 3 B12 (A**2) : -0.15000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.045 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.047 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.034 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.926 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2691 ; 0.027 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1721 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3668 ; 2.693 ; 2.017 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4194 ; 1.580 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 338 ; 4.733 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 111 ;39.662 ;24.505 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 411 ;11.335 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;14.835 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 399 ; 0.133 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3071 ; 0.020 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 546 ; 0.029 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1667 ; 2.670 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 683 ; 1.414 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2648 ; 3.621 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1024 ; 5.721 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1018 ; 7.746 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4412 ; 2.456 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3L0F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000056675. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : DOUBLE CRYSTAL, SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 86993 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 42.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : 0.07700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.84900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 1KTP AND 1JBO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8 % PEG 2000 , 0.05 M MES, 20 MM REMARK 280 MGCL2, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290- REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 93.55000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.01112 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 19.94000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 93.55000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 54.01112 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 19.94000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 93.55000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 54.01112 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 19.94000 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 93.55000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 54.01112 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 19.94000 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 93.55000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 54.01112 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 19.94000 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 93.55000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 54.01112 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 19.94000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 108.02224 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 39.88000 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 108.02224 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 39.88000 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 108.02224 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 39.88000 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 108.02224 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 39.88000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 108.02224 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 39.88000 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 108.02224 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 39.88000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 60630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 68180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -502.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 295 LIES ON A SPECIAL POSITION. REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 SER A 125 CA CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 84 CAC CYC A 484 1.94 REMARK 500 O HOH A 505 O HOH A 607 2.05 REMARK 500 O HOH A 392 O HOH A 404 2.09 REMARK 500 O HOH A 424 O HOH B 423 2.12 REMARK 500 O HOH A 226 O HOH A 578 2.13 REMARK 500 O HOH A 470 O HOH A 480 2.17 REMARK 500 O HOH A 298 O HOH A 615 2.17 REMARK 500 O HOH B 194 O HOH B 418 2.17 REMARK 500 O HOH A 621 O HOH A 624 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 39 CG GLU A 39 CD 0.101 REMARK 500 GLU A 117 CG GLU A 117 CD 0.095 REMARK 500 GLN B 68 CD GLN B 68 NE2 0.188 REMARK 500 GLU B 115 CG GLU B 115 CD 0.101 REMARK 500 GLN B 132 CG GLN B 132 CD 0.148 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 30 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 30 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 42 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG B 57 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG B 78 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG B 166 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 63 69.83 -119.34 REMARK 500 ALA A 75 44.09 -93.59 REMARK 500 THR B 75 148.04 78.23 REMARK 500 CYS B 109 -59.40 -135.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CYC A 484 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CYC B 584 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CYC B 555 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JB0 RELATED DB: PDB REMARK 900 SYNECHOCOCCUS ELONGATUS AT 1.45A REMARK 900 RELATED ID: 3BRP RELATED DB: PDB REMARK 900 GALDIERIA SULPHURARIA AT 1.85 REMARK 900 RELATED ID: 1KTP RELATED DB: PDB REMARK 900 SYNECHOCOCCUS VULCANUS AT 1.6 A REMARK 900 RELATED ID: 1PHN RELATED DB: PDB REMARK 900 CYANIDIUM CALDARIUM AT 1.65 A REMARK 900 RELATED ID: 2BV8 RELATED DB: PDB REMARK 900 GRACILARIA CHILENSIS AT 2 A REMARK 900 RELATED ID: 1F99 RELATED DB: PDB REMARK 900 POLYSIPHONIA AT 2.4 A DBREF 3L0F A 1 162 UNP P50032 PHCA_THEEB 1 162 DBREF 3L0F B 1 172 UNP P50033 PHCB_THEEB 1 172 SEQRES 1 A 162 MET LYS THR PRO ILE THR GLU ALA ILE ALA ALA ALA ASP SEQRES 2 A 162 THR GLN GLY ARG PHE LEU SER ASN THR GLU LEU GLN ALA SEQRES 3 A 162 VAL ASP GLY ARG PHE LYS ARG ALA VAL ALA SER MET GLU SEQRES 4 A 162 ALA ALA ARG ALA LEU THR ASN ASN ALA GLN SER LEU ILE SEQRES 5 A 162 ASP GLY ALA ALA GLN ALA VAL TYR GLN LYS PHE PRO TYR SEQRES 6 A 162 THR THR THR MET GLN GLY SER GLN TYR ALA SER THR PRO SEQRES 7 A 162 GLU GLY LYS ALA LYS CYS ALA ARG ASP ILE GLY TYR TYR SEQRES 8 A 162 LEU ARG MET VAL THR TYR CYS LEU VAL ALA GLY GLY THR SEQRES 9 A 162 GLY PRO MET ASP GLU TYR LEU ILE ALA GLY LEU SER GLU SEQRES 10 A 162 ILE ASN SER THR PHE ASP LEU SER PRO SER TRP TYR ILE SEQRES 11 A 162 GLU ALA LEU LYS TYR ILE LYS ALA ASN HIS GLY LEU THR SEQRES 12 A 162 GLY GLN ALA ALA VAL GLU ALA ASN ALA TYR ILE ASP TYR SEQRES 13 A 162 ALA ILE ASN ALA LEU SER SEQRES 1 B 172 MET LEU ASP ALA PHE ALA LYS VAL VAL ALA GLN ALA ASP SEQRES 2 B 172 ALA ARG GLY GLU PHE LEU THR ASN ALA GLN PHE ASP ALA SEQRES 3 B 172 LEU SER ASN LEU VAL LYS GLU GLY ASN LYS ARG LEU ASP SEQRES 4 B 172 ALA VAL ASN ARG ILE THR SER ASN ALA SER THR ILE VAL SEQRES 5 B 172 ALA ASN ALA ALA ARG ALA LEU PHE ALA GLU GLN PRO GLN SEQRES 6 B 172 LEU ILE GLN PRO GLY GLY MEN ALA TYR THR ASN ARG ARG SEQRES 7 B 172 MET ALA ALA CYS LEU ARG ASP MET GLU ILE ILE LEU ARG SEQRES 8 B 172 TYR VAL THR TYR ALA ILE LEU ALA GLY ASP SER SER VAL SEQRES 9 B 172 LEU ASP ASP ARG CYS LEU ASN GLY LEU ARG GLU THR TYR SEQRES 10 B 172 GLN ALA LEU GLY THR PRO GLY SER SER VAL ALA VAL ALA SEQRES 11 B 172 ILE GLN LYS MET LYS ASP ALA ALA ILE ALA ILE ALA ASN SEQRES 12 B 172 ASP PRO ASN GLY ILE THR PRO GLY ASP CYS SER ALA LEU SEQRES 13 B 172 MET SER GLU ILE ALA GLY TYR PHE ASP ARG ALA ALA ALA SEQRES 14 B 172 ALA VAL ALA MODRES 3L0F MEN B 72 ASN N-METHYL ASPARAGINE HET MEN B 72 9 HET CYC A 484 43 HET CYC B 584 43 HET CYC B 555 43 HETNAM MEN N-METHYL ASPARAGINE HETNAM CYC PHYCOCYANOBILIN FORMUL 2 MEN C5 H10 N2 O3 FORMUL 3 CYC 3(C33 H40 N4 O6) FORMUL 6 HOH *573(H2 O) HELIX 1 1 THR A 3 GLN A 15 1 13 HELIX 2 2 SER A 20 ASN A 47 1 28 HELIX 3 3 ASN A 47 PHE A 63 1 17 HELIX 4 4 PRO A 64 THR A 68 5 5 HELIX 5 5 THR A 77 GLY A 102 1 26 HELIX 6 6 THR A 104 LEU A 111 1 8 HELIX 7 7 GLY A 114 ASP A 123 1 10 HELIX 8 8 SER A 125 HIS A 140 1 16 HELIX 9 9 THR A 143 SER A 162 1 20 HELIX 10 10 ASP B 3 GLY B 16 1 14 HELIX 11 11 THR B 20 GLU B 33 1 14 HELIX 12 12 GLU B 33 ASN B 47 1 15 HELIX 13 13 ASN B 47 GLN B 63 1 17 HELIX 14 14 PRO B 64 ILE B 67 5 4 HELIX 15 15 THR B 75 GLY B 100 1 26 HELIX 16 16 SER B 102 CYS B 109 1 8 HELIX 17 17 GLY B 112 GLY B 121 1 10 HELIX 18 18 PRO B 123 ASN B 143 1 21 HELIX 19 19 CYS B 153 ALA B 172 1 20 LINK C GLY B 71 N MEN B 72 1555 1555 1.31 LINK C MEN B 72 N ALA B 73 1555 1555 1.35 LINK SG CYS B 82 CAC CYC B 584 1555 1555 1.70 SITE 1 AC1 28 VAL A 59 THR A 66 SER A 72 GLN A 73 SITE 2 AC1 28 TYR A 74 ALA A 75 GLY A 80 LYS A 83 SITE 3 AC1 28 CYS A 84 ARG A 86 ASP A 87 TYR A 90 SITE 4 AC1 28 TYR A 110 ILE A 118 PHE A 122 LEU A 124 SITE 5 AC1 28 TRP A 128 TYR A 129 HOH A 195 HOH A 199 SITE 6 AC1 28 HOH A 245 HOH A 274 HOH A 349 ARG B 57 SITE 7 AC1 28 ILE B 67 THR B 75 ASN B 76 HOH B 203 SITE 1 AC2 22 LEU B 59 MEN B 72 ALA B 73 ARG B 77 SITE 2 AC2 22 ARG B 78 ALA B 81 CYS B 82 ARG B 84 SITE 3 AC2 22 ASP B 85 ILE B 88 ARG B 108 CYS B 109 SITE 4 AC2 22 LEU B 113 LEU B 120 THR B 122 HOH B 265 SITE 5 AC2 22 HOH B 296 HOH B 310 HOH B 335 HOH B 364 SITE 6 AC2 22 HOH B 580 HOH B 631 SITE 1 AC3 26 ASN A 21 LEU A 24 ASP A 28 ARG A 33 SITE 2 AC3 26 GLN A 145 HOH A 206 ASN B 35 LYS B 36 SITE 3 AC3 26 ASP B 39 ALA B 142 ASN B 143 ILE B 148 SITE 4 AC3 26 THR B 149 PRO B 150 GLY B 151 CYS B 153 SITE 5 AC3 26 HOH B 239 HOH B 287 HOH B 303 HOH B 308 SITE 6 AC3 26 HOH B 320 HOH B 403 HOH B 415 HOH B 576 SITE 7 AC3 26 HOH B 605 HOH B 633 CRYST1 187.100 187.100 59.820 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005345 0.003086 0.000000 0.00000 SCALE2 0.000000 0.006172 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016717 0.00000